Wall clock time and date at job start Tue Mar 31 2020 05:34:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35984 * 117.00324 * 2 1 4 4 C 1.38693 * 119.97758 * 0.02562 * 3 2 1 5 5 C 1.38223 * 120.08887 * 179.97438 * 4 3 2 6 6 C 1.38537 * 120.05379 * 0.02562 * 5 4 3 7 7 O 1.36074 * 120.01842 * 179.97438 * 6 5 4 8 8 C 1.42900 * 117.00231 * 1.98719 * 7 6 5 9 9 H 1.08996 * 109.47137 * 22.35347 * 8 7 6 10 10 C 1.50697 * 109.46902 * 142.35611 * 8 7 6 11 11 H 1.07995 * 120.00497 * 25.66940 * 10 8 7 12 12 C 1.37879 * 119.99846 * 205.66131 * 10 8 7 13 13 N 1.31514 * 119.99987 * 185.08731 * 12 10 8 14 14 Si 1.86806 * 119.99968 * 5.09707 * 12 10 8 15 15 H 1.48503 * 109.47109 * 94.40371 * 14 12 10 16 16 H 1.48495 * 109.46894 * 214.40567 * 14 12 10 17 17 H 1.48499 * 109.47014 * 334.40619 * 14 12 10 18 18 C 1.53005 * 109.46911 * 262.35567 * 8 7 6 19 19 Cl 1.80299 * 109.47036 * 63.07714 * 18 8 7 20 20 C 1.39128 * 119.96189 * 359.97438 * 6 5 4 21 21 O 1.35990 * 120.04515 * 180.02562 * 20 6 5 22 22 C 1.42906 * 116.99784 * 180.02562 * 21 20 6 23 23 C 1.38546 * 119.91178 * 0.28029 * 20 6 5 24 24 H 1.08993 * 109.47005 * 299.99615 * 1 2 3 25 25 H 1.08999 * 109.46838 * 60.00057 * 1 2 3 26 26 H 1.08998 * 109.47116 * 179.97438 * 1 2 3 27 27 H 1.08000 * 119.96020 * 359.97382 * 4 3 2 28 28 H 1.08002 * 119.97596 * 179.97438 * 5 4 3 29 29 H 0.97001 * 119.99817 * 180.02562 * 13 12 10 30 30 H 1.09001 * 109.46928 * 183.07610 * 18 8 7 31 31 H 1.09001 * 109.47245 * 303.07300 * 18 8 7 32 32 H 1.08996 * 109.46616 * 180.02562 * 22 21 20 33 33 H 1.09001 * 109.47500 * 60.00005 * 22 21 20 34 34 H 1.08997 * 109.47243 * 299.99619 * 22 21 20 35 35 H 1.08003 * 120.03108 * 179.72256 * 23 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2116 0.0000 4 6 1.2906 2.3745 0.0005 5 6 1.9158 3.6073 0.0011 6 6 3.2991 3.6837 0.0005 7 8 3.9138 4.8977 0.0005 8 6 3.0717 6.0513 0.0453 9 1 2.1026 5.7778 0.4624 10 6 3.7112 7.1067 0.9103 11 1 4.7833 7.1229 1.0388 12 6 2.9274 8.0518 1.5375 13 7 3.4905 9.0316 2.2103 14 14 1.0656 7.9405 1.4320 15 1 0.5449 7.2172 2.6198 16 1 0.4894 9.3086 1.3935 17 1 0.6827 7.2072 0.1988 18 6 2.8813 6.5989 -1.3707 19 17 2.0347 5.3694 -2.3818 20 6 4.0593 2.5185 0.0000 21 8 5.4173 2.5915 0.0000 22 6 6.1335 1.3549 -0.0011 23 6 3.4311 1.2837 -0.0059 24 1 -0.3633 0.5137 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 0.2122 2.3169 0.0005 28 1 1.3255 4.5117 0.0011 29 1 2.9390 9.6963 2.6519 30 1 2.2842 7.5099 -1.3307 31 1 3.8546 6.8214 -1.8082 32 1 7.2048 1.5556 -0.0005 33 1 5.8709 0.7837 -0.8916 34 1 5.8710 0.7822 0.8884 35 1 4.0194 0.3779 -0.0108 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001226827217.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:56 Heat of formation + Delta-G solvation = -88.984940 kcal Electronic energy + Delta-G solvation = -20923.657593 eV Core-core repulsion = 17528.425879 eV Total energy + Delta-G solvation = -3395.231713 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 286.080 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.32616 -38.74361 -38.05579 -35.58782 -35.03173 -33.18293 -30.66749 -30.25651 -28.78949 -27.09778 -26.70716 -25.28416 -22.89274 -21.63878 -20.38541 -18.75821 -17.51672 -16.82057 -16.46785 -16.00470 -15.78506 -15.32774 -14.96985 -14.60076 -14.42710 -14.23985 -13.53600 -13.10604 -12.96142 -12.82834 -12.43197 -12.35289 -12.18220 -11.63009 -11.56124 -11.29124 -11.21104 -11.06850 -10.76091 -10.61356 -10.34468 -10.04461 -9.75467 -9.46888 -9.24114 -8.85935 -8.26374 -6.98484 -6.42687 -4.48011 1.62454 1.88605 2.97983 3.08663 3.12487 3.16861 3.33883 3.65130 4.08137 4.09550 4.11252 4.89369 5.01124 5.16589 5.17478 5.22568 5.26088 5.33330 5.43215 5.56082 5.64219 5.65809 5.79421 5.84713 5.94871 6.06774 6.18053 6.51065 6.61654 6.69007 6.89142 7.21012 7.49417 7.58127 7.99660 8.44734 8.74288 9.14300 10.68339 Molecular weight = 286.08amu Principal moments of inertia in cm(-1) A = 0.016152 B = 0.006256 C = 0.005602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1733.088991 B = 4474.489398 C = 4997.252157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.322 6.322 3 C 0.108 3.892 4 C -0.201 4.201 5 C -0.132 4.132 6 C 0.101 3.899 7 O -0.288 6.288 8 C 0.177 3.823 9 H 0.047 0.953 10 C -0.522 4.522 11 H 0.092 0.908 12 C 0.085 3.915 13 N -0.872 5.872 14 Si 0.857 3.143 15 H -0.267 1.267 16 H -0.276 1.276 17 H -0.256 1.256 18 C -0.038 4.038 19 Cl -0.230 7.230 20 C 0.122 3.878 21 O -0.297 6.297 22 C 0.027 3.973 23 C -0.207 4.207 24 H 0.053 0.947 25 H 0.053 0.947 26 H 0.094 0.906 27 H 0.125 0.875 28 H 0.140 0.860 29 H 0.272 0.728 30 H 0.094 0.906 31 H 0.095 0.905 32 H 0.097 0.903 33 H 0.051 0.949 34 H 0.052 0.948 35 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.206 -14.094 -4.844 15.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.237 6.237 3 C 0.064 3.936 4 C -0.220 4.220 5 C -0.150 4.150 6 C 0.054 3.946 7 O -0.201 6.201 8 C 0.121 3.879 9 H 0.065 0.935 10 C -0.559 4.559 11 H 0.110 0.890 12 C -0.121 4.121 13 N -0.508 5.508 14 Si 0.682 3.318 15 H -0.193 1.193 16 H -0.201 1.201 17 H -0.180 1.180 18 C -0.100 4.100 19 Cl -0.205 7.205 20 C 0.076 3.924 21 O -0.210 6.210 22 C -0.069 4.069 23 C -0.227 4.227 24 H 0.072 0.928 25 H 0.071 0.929 26 H 0.112 0.888 27 H 0.142 0.858 28 H 0.158 0.842 29 H 0.083 0.917 30 H 0.113 0.887 31 H 0.114 0.886 32 H 0.115 0.885 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -3.869 -13.950 -4.804 15.253 hybrid contribution -1.552 0.040 -0.048 1.554 sum -5.421 -13.910 -4.852 15.698 Atomic orbital electron populations 1.22963 0.78963 1.03231 1.01351 1.85994 1.20872 1.27148 1.89645 1.18387 0.91334 0.83875 1.00050 1.20834 0.99548 0.91544 1.10055 1.21019 0.92982 0.98499 1.02544 1.18259 0.90004 0.85651 1.00689 1.86326 1.35845 1.10802 1.87151 1.20821 0.92448 0.83401 0.91202 0.93516 1.20754 0.97039 1.09941 1.28208 0.89025 1.24907 0.98617 0.94598 0.93958 1.69845 1.36210 1.12840 1.31867 0.87141 0.85861 0.78748 0.80036 1.19264 1.20148 1.17981 1.26048 0.98771 0.92162 0.93060 1.98665 1.82441 1.63939 1.75419 1.17892 0.82615 0.90846 1.01012 1.86261 1.14614 1.31274 1.88844 1.23019 0.96880 0.86054 1.00914 1.20021 0.92473 0.96384 1.13804 0.92821 0.92877 0.88766 0.85763 0.84211 0.91723 0.88730 0.88618 0.88488 0.93025 0.92954 0.84666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 9.81 101.05 0.99 1.30 16 2 O -0.32 -4.56 10.50 -19.69 -0.21 -4.77 16 3 C 0.11 1.74 6.68 -39.26 -0.26 1.48 16 4 C -0.20 -3.30 9.03 -39.42 -0.36 -3.65 16 5 C -0.13 -2.51 7.25 -39.48 -0.29 -2.80 16 6 C 0.10 2.11 6.10 -39.14 -0.24 1.87 16 7 O -0.29 -6.78 9.46 -34.56 -0.33 -7.11 16 8 C 0.18 4.12 1.69 -27.88 -0.05 4.08 16 9 H 0.05 1.08 2.90 -51.93 -0.15 0.93 16 10 C -0.52 -14.05 9.23 -34.44 -0.32 -14.37 16 11 H 0.09 2.74 8.06 -52.49 -0.42 2.31 16 12 C 0.08 2.27 5.47 -17.82 -0.10 2.18 16 13 N -0.87 -24.77 13.96 55.43 0.77 -24.00 16 14 Si 0.86 19.32 26.38 -169.99 -4.48 14.83 16 15 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 16 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 17 H -0.26 -5.37 5.98 56.52 0.34 -5.04 16 18 C -0.04 -0.78 5.96 37.16 0.22 -0.56 16 19 Cl -0.23 -4.39 25.88 -51.86 -1.34 -5.73 16 20 C 0.12 2.30 6.70 -39.14 -0.26 2.04 16 21 O -0.30 -5.39 10.28 -34.30 -0.35 -5.75 16 22 C 0.03 0.33 9.81 101.05 0.99 1.32 16 23 C -0.21 -3.39 8.97 -39.31 -0.35 -3.74 16 24 H 0.05 0.51 7.66 -51.93 -0.40 0.11 16 25 H 0.05 0.50 7.66 -51.93 -0.40 0.11 16 26 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.12 1.71 6.28 -52.49 -0.33 1.38 16 28 H 0.14 2.73 5.06 -52.49 -0.27 2.46 16 29 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 30 H 0.09 1.90 6.92 -51.93 -0.36 1.54 16 31 H 0.10 1.93 8.14 -51.93 -0.42 1.51 16 32 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.05 0.55 7.65 -51.93 -0.40 0.16 16 34 H 0.05 0.57 7.67 -51.93 -0.40 0.17 16 35 H 0.14 1.86 6.30 -52.48 -0.33 1.53 16 LS Contribution 302.25 15.07 4.55 4.55 Total: -1.00 -30.04 302.25 -5.32 -35.36 By element: Atomic # 1 Polarization: 7.38 SS G_CDS: -3.92 Total: 3.46 kcal Atomic # 6 Polarization: -10.84 SS G_CDS: -0.02 Total: -10.86 kcal Atomic # 7 Polarization: -24.77 SS G_CDS: 0.77 Total: -24.00 kcal Atomic # 8 Polarization: -16.74 SS G_CDS: -0.89 Total: -17.63 kcal Atomic # 14 Polarization: 19.32 SS G_CDS: -4.48 Total: 14.83 kcal Atomic # 17 Polarization: -4.39 SS G_CDS: -1.34 Total: -5.73 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -30.04 -5.32 -35.36 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226827217.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.627 kcal (2) G-P(sol) polarization free energy of solvation -30.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds