Wall clock time and date at job start Tue Mar 31 2020 05:34:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35984 * 117.00324 * 2 1 4 4 C 1.38693 * 119.97758 * 0.02562 * 3 2 1 5 5 C 1.38223 * 120.08887 * 179.97438 * 4 3 2 6 6 C 1.38537 * 120.05379 * 0.02562 * 5 4 3 7 7 O 1.36074 * 120.01842 * 179.97438 * 6 5 4 8 8 C 1.42900 * 117.00231 * 1.98719 * 7 6 5 9 9 H 1.08996 * 109.47137 * 22.35347 * 8 7 6 10 10 C 1.50697 * 109.46902 * 142.35611 * 8 7 6 11 11 H 1.07995 * 120.00497 * 25.66940 * 10 8 7 12 12 C 1.37879 * 119.99846 * 205.66131 * 10 8 7 13 13 N 1.31514 * 119.99987 * 185.08731 * 12 10 8 14 14 Si 1.86806 * 119.99968 * 5.09707 * 12 10 8 15 15 H 1.48503 * 109.47109 * 94.40371 * 14 12 10 16 16 H 1.48495 * 109.46894 * 214.40567 * 14 12 10 17 17 H 1.48499 * 109.47014 * 334.40619 * 14 12 10 18 18 C 1.53005 * 109.46911 * 262.35567 * 8 7 6 19 19 Cl 1.80299 * 109.47036 * 63.07714 * 18 8 7 20 20 C 1.39128 * 119.96189 * 359.97438 * 6 5 4 21 21 O 1.35990 * 120.04515 * 180.02562 * 20 6 5 22 22 C 1.42906 * 116.99784 * 180.02562 * 21 20 6 23 23 C 1.38546 * 119.91178 * 0.28029 * 20 6 5 24 24 H 1.08993 * 109.47005 * 299.99615 * 1 2 3 25 25 H 1.08999 * 109.46838 * 60.00057 * 1 2 3 26 26 H 1.08998 * 109.47116 * 179.97438 * 1 2 3 27 27 H 1.08000 * 119.96020 * 359.97382 * 4 3 2 28 28 H 1.08002 * 119.97596 * 179.97438 * 5 4 3 29 29 H 0.97001 * 119.99817 * 180.02562 * 13 12 10 30 30 H 1.09001 * 109.46928 * 183.07610 * 18 8 7 31 31 H 1.09001 * 109.47245 * 303.07300 * 18 8 7 32 32 H 1.08996 * 109.46616 * 180.02562 * 22 21 20 33 33 H 1.09001 * 109.47500 * 60.00005 * 22 21 20 34 34 H 1.08997 * 109.47243 * 299.99619 * 22 21 20 35 35 H 1.08003 * 120.03108 * 179.72256 * 23 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2116 0.0000 4 6 1.2906 2.3745 0.0005 5 6 1.9158 3.6073 0.0011 6 6 3.2991 3.6837 0.0005 7 8 3.9138 4.8977 0.0005 8 6 3.0717 6.0513 0.0453 9 1 2.1026 5.7778 0.4624 10 6 3.7112 7.1067 0.9103 11 1 4.7833 7.1229 1.0388 12 6 2.9274 8.0518 1.5375 13 7 3.4905 9.0316 2.2103 14 14 1.0656 7.9405 1.4320 15 1 0.5449 7.2172 2.6198 16 1 0.4894 9.3086 1.3935 17 1 0.6827 7.2072 0.1988 18 6 2.8813 6.5989 -1.3707 19 17 2.0347 5.3694 -2.3818 20 6 4.0593 2.5185 0.0000 21 8 5.4173 2.5915 0.0000 22 6 6.1335 1.3549 -0.0011 23 6 3.4311 1.2837 -0.0059 24 1 -0.3633 0.5137 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 0.2122 2.3169 0.0005 28 1 1.3255 4.5117 0.0011 29 1 2.9390 9.6963 2.6519 30 1 2.2842 7.5099 -1.3307 31 1 3.8546 6.8214 -1.8082 32 1 7.2048 1.5556 -0.0005 33 1 5.8709 0.7837 -0.8916 34 1 5.8710 0.7822 0.8884 35 1 4.0194 0.3779 -0.0108 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001226827217.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:56 Heat of formation + Delta-G solvation = -108.511379 kcal Electronic energy + Delta-G solvation = -20924.504322 eV Core-core repulsion = 17528.425879 eV Total energy + Delta-G solvation = -3396.078443 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 286.080 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.65366 -39.97643 -39.51330 -36.99200 -36.56246 -35.13862 -32.44202 -31.53748 -30.08290 -28.03715 -27.82708 -27.20627 -24.39783 -22.91771 -21.99683 -20.15995 -19.13425 -18.49785 -17.81488 -17.26901 -16.99935 -16.61571 -16.35578 -15.95295 -15.78479 -15.65554 -15.17488 -14.74093 -14.64412 -14.31431 -13.69306 -13.54437 -13.39926 -13.18742 -12.87200 -12.84373 -12.53316 -12.41740 -12.13927 -11.97994 -11.85921 -11.66568 -11.43962 -11.13673 -10.92671 -10.74769 -9.56496 -8.47972 -8.40124 -6.60493 0.29112 0.53147 1.25427 1.30940 1.39232 1.40049 2.18964 2.24303 2.47718 2.59678 2.74012 2.90435 3.78027 3.99284 4.03151 4.13109 4.23204 4.25916 4.32726 4.43821 4.44731 4.47803 4.53624 4.60671 4.74885 4.78839 4.81011 4.91567 5.16619 5.31195 5.34599 5.55704 5.92446 6.32168 6.41974 6.51182 6.86520 7.08917 8.67771 Molecular weight = 286.08amu Principal moments of inertia in cm(-1) A = 0.016152 B = 0.006256 C = 0.005602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1733.088991 B = 4474.489398 C = 4997.252157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.327 6.327 3 C 0.119 3.881 4 C -0.201 4.201 5 C -0.136 4.136 6 C 0.057 3.943 7 O -0.316 6.316 8 C 0.185 3.815 9 H 0.054 0.946 10 C -0.537 4.537 11 H 0.040 0.960 12 C 0.036 3.964 13 N -0.921 5.921 14 Si 0.921 3.079 15 H -0.263 1.263 16 H -0.267 1.267 17 H -0.230 1.230 18 C -0.034 4.034 19 Cl -0.207 7.207 20 C 0.114 3.886 21 O -0.330 6.330 22 C 0.017 3.983 23 C -0.207 4.207 24 H 0.061 0.939 25 H 0.061 0.939 26 H 0.124 0.876 27 H 0.154 0.846 28 H 0.134 0.866 29 H 0.277 0.723 30 H 0.103 0.897 31 H 0.092 0.908 32 H 0.115 0.885 33 H 0.068 0.932 34 H 0.066 0.934 35 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.732 -16.622 -5.722 18.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.242 6.242 3 C 0.074 3.926 4 C -0.220 4.220 5 C -0.155 4.155 6 C 0.011 3.989 7 O -0.231 6.231 8 C 0.128 3.872 9 H 0.071 0.929 10 C -0.575 4.575 11 H 0.058 0.942 12 C -0.166 4.166 13 N -0.558 5.558 14 Si 0.741 3.259 15 H -0.187 1.187 16 H -0.192 1.192 17 H -0.153 1.153 18 C -0.097 4.097 19 Cl -0.181 7.181 20 C 0.068 3.932 21 O -0.244 6.244 22 C -0.077 4.077 23 C -0.226 4.226 24 H 0.080 0.920 25 H 0.080 0.920 26 H 0.142 0.858 27 H 0.171 0.829 28 H 0.151 0.849 29 H 0.087 0.913 30 H 0.122 0.878 31 H 0.111 0.889 32 H 0.134 0.866 33 H 0.087 0.913 34 H 0.085 0.915 35 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -6.394 -16.518 -5.699 18.607 hybrid contribution -0.701 0.588 0.213 0.940 sum -7.095 -15.930 -5.486 18.281 Atomic orbital electron populations 1.23340 0.76573 1.05588 1.02139 1.86010 1.23279 1.25819 1.89057 1.18516 0.91425 0.84635 0.98072 1.21095 1.01073 0.90589 1.09230 1.21024 0.92218 0.99363 1.02884 1.18642 0.91242 0.85041 1.03975 1.86243 1.36660 1.11863 1.88342 1.20582 0.92064 0.82683 0.91833 0.92887 1.20845 0.94972 1.11783 1.29876 0.94165 1.25747 1.04022 0.93684 0.93110 1.69980 1.38502 1.14021 1.33322 0.86130 0.79007 0.79506 0.81207 1.18728 1.19177 1.15291 1.25662 0.99307 0.92518 0.92258 1.98658 1.81820 1.63181 1.74442 1.18088 0.83110 0.91089 1.00866 1.86216 1.14679 1.34624 1.88868 1.23368 0.97387 0.84570 1.02380 1.20273 0.93118 0.96295 1.12894 0.91993 0.92036 0.85825 0.82865 0.84886 0.91314 0.87842 0.88899 0.86631 0.91314 0.91534 0.82123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 9.81 113.37 1.11 1.39 16 2 O -0.33 -8.02 10.50 -93.37 -0.98 -9.00 16 3 C 0.12 3.48 6.68 22.48 0.15 3.63 16 4 C -0.20 -6.05 9.03 22.38 0.20 -5.85 16 5 C -0.14 -5.02 7.25 22.34 0.16 -4.85 16 6 C 0.06 2.37 6.10 22.56 0.14 2.51 16 7 O -0.32 -15.42 9.46 -80.44 -0.76 -16.18 16 8 C 0.18 8.74 1.69 29.85 0.05 8.79 16 9 H 0.05 2.42 2.90 -2.39 -0.01 2.42 16 10 C -0.54 -30.33 9.23 25.60 0.24 -30.09 16 11 H 0.04 2.60 8.06 -2.91 -0.02 2.58 16 12 C 0.04 1.97 5.47 84.66 0.46 2.44 16 13 N -0.92 -54.28 13.96 21.45 0.30 -53.98 16 14 Si 0.92 39.55 26.38 68.60 1.81 41.36 16 15 H -0.26 -11.04 7.11 99.48 0.71 -10.33 16 16 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 17 H -0.23 -8.84 5.98 99.48 0.59 -8.25 16 18 C -0.03 -1.42 5.96 71.98 0.43 -0.99 16 19 Cl -0.21 -7.56 25.88 -2.72 -0.07 -7.63 16 20 C 0.11 4.26 6.70 22.56 0.15 4.42 16 21 O -0.33 -12.02 10.28 -79.49 -0.82 -12.84 16 22 C 0.02 0.39 9.81 113.37 1.11 1.50 16 23 C -0.21 -6.31 8.97 22.45 0.20 -6.11 16 24 H 0.06 0.91 7.66 -2.39 -0.02 0.89 16 25 H 0.06 0.90 7.66 -2.39 -0.02 0.88 16 26 H 0.12 1.25 8.14 -2.39 -0.02 1.23 16 27 H 0.15 3.60 6.28 -2.91 -0.02 3.58 16 28 H 0.13 4.98 5.06 -2.91 -0.01 4.97 16 29 H 0.28 15.01 8.31 -92.71 -0.77 14.24 16 30 H 0.10 4.04 6.92 -2.39 -0.02 4.03 16 31 H 0.09 3.84 8.14 -2.39 -0.02 3.82 16 32 H 0.12 2.15 8.14 -2.39 -0.02 2.13 16 33 H 0.07 1.32 7.65 -2.39 -0.02 1.30 16 34 H 0.07 1.32 7.67 -2.39 -0.02 1.30 16 35 H 0.16 3.93 6.30 -2.91 -0.02 3.91 16 Total: -1.00 -68.04 302.25 4.90 -63.14 By element: Atomic # 1 Polarization: 17.35 SS G_CDS: 1.01 Total: 18.36 kcal Atomic # 6 Polarization: -27.62 SS G_CDS: 4.41 Total: -23.22 kcal Atomic # 7 Polarization: -54.28 SS G_CDS: 0.30 Total: -53.98 kcal Atomic # 8 Polarization: -35.47 SS G_CDS: -2.56 Total: -38.02 kcal Atomic # 14 Polarization: 39.55 SS G_CDS: 1.81 Total: 41.36 kcal Atomic # 17 Polarization: -7.56 SS G_CDS: -0.07 Total: -7.63 kcal Total: -68.04 4.90 -63.14 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226827217.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.373 kcal (2) G-P(sol) polarization free energy of solvation -68.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds