Wall clock time and date at job start Tue Mar 31 2020 06:40:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.34644 * 119.41642 * 2 1 4 4 C 1.41276 * 119.77051 * 180.25473 * 3 2 1 5 5 O 1.35390 * 120.64569 * 179.74355 * 4 3 2 6 6 C 1.42899 * 116.99983 * 182.50234 * 5 4 3 7 7 H 1.09007 * 109.47011 * 324.08648 * 6 5 4 8 8 C 1.50697 * 109.47600 * 84.08163 * 6 5 4 9 9 H 1.08009 * 119.99774 * 54.76831 * 8 6 5 10 10 C 1.37871 * 120.00322 * 234.76722 * 8 6 5 11 11 N 1.31521 * 120.00018 * 167.85878 * 10 8 6 12 12 Si 1.86799 * 120.00285 * 347.85542 * 10 8 6 13 13 H 1.48510 * 109.46796 * 92.99243 * 12 10 8 14 14 H 1.48491 * 109.47475 * 212.99259 * 12 10 8 15 15 H 1.48500 * 109.46887 * 333.00075 * 12 10 8 16 16 C 1.50701 * 109.47181 * 204.08718 * 6 5 4 17 17 C 1.38233 * 119.99572 * 322.38822 * 16 6 5 18 18 C 1.38242 * 119.99838 * 180.02562 * 17 16 6 19 19 C 1.38237 * 119.99916 * 0.07298 * 18 17 16 20 20 C 1.38234 * 120.00053 * 359.97438 * 19 18 17 21 21 C 1.38235 * 120.00213 * 142.52426 * 16 6 5 22 22 C 1.38299 * 118.70556 * 359.46475 * 4 3 2 23 23 C 1.40031 * 118.85153 * 0.25566 * 22 4 3 24 24 O 1.22008 * 119.93389 * 180.02562 * 23 22 4 25 25 O 1.34081 * 119.42013 * 179.71213 * 2 1 3 26 26 H 1.09004 * 109.46512 * 180.28316 * 1 2 3 27 27 H 1.08995 * 109.47257 * 300.28673 * 1 2 3 28 28 H 1.09000 * 109.46725 * 60.28827 * 1 2 3 29 29 H 1.07998 * 120.11223 * 0.02562 * 3 2 1 30 30 H 0.96999 * 120.00251 * 180.02562 * 11 10 8 31 31 H 1.07996 * 120.00091 * 0.10887 * 17 16 6 32 32 H 1.08000 * 120.00081 * 180.34249 * 18 17 16 33 33 H 1.07995 * 119.99872 * 179.97438 * 19 18 17 34 34 H 1.07995 * 120.00175 * 179.97438 * 20 19 18 35 35 H 1.08005 * 119.99795 * 359.97233 * 21 16 6 36 36 H 1.08001 * 120.57899 * 180.22608 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1683 1.1728 0.0000 4 6 3.5810 1.1816 -0.0055 5 8 4.2639 2.3506 -0.0108 6 6 5.6893 2.2691 -0.0716 7 1 6.0286 1.4056 0.5007 8 6 6.1233 2.1221 -1.5073 9 1 5.8035 2.8436 -2.2447 10 6 6.9284 1.0666 -1.8794 11 7 7.1128 0.7975 -3.1536 12 14 7.7576 0.0187 -0.5742 13 1 6.8996 -1.1523 -0.2609 14 1 9.0725 -0.4519 -1.0788 15 1 7.9595 0.8272 0.6550 16 6 6.2895 3.5237 0.5087 17 6 5.6845 4.7464 0.2856 18 6 6.2353 5.8974 0.8175 19 6 7.3920 5.8257 1.5711 20 6 7.9975 4.6031 1.7933 21 6 7.4465 3.4521 1.2616 22 6 4.2528 -0.0273 0.0006 23 6 3.5089 -1.2137 0.0065 24 8 4.0813 -2.2911 0.0124 25 8 2.1656 -1.1679 0.0059 26 1 -0.3632 -1.0277 0.0051 27 1 -0.3633 0.5182 0.8873 28 1 -0.3633 0.5094 -0.8926 29 1 1.6206 2.1037 0.0004 30 1 7.6790 0.0548 -3.4155 31 1 4.7808 4.8023 -0.3030 32 1 5.7596 6.8520 0.6478 33 1 7.8225 6.7250 1.9862 34 1 8.9013 4.5472 2.3817 35 1 7.9202 2.4970 1.4344 36 1 5.3324 -0.0559 0.0004 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001226960034.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:35 Heat of formation + Delta-G solvation = -52.599290 kcal Electronic energy + Delta-G solvation = -22293.328779 eV Core-core repulsion = 18902.107715 eV Total energy + Delta-G solvation = -3391.221064 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 286.104 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.47615 -39.25345 -37.98279 -37.22787 -33.96531 -33.05592 -31.89801 -31.09160 -30.36705 -28.01029 -26.95088 -23.84709 -23.56149 -22.47912 -21.91806 -20.45733 -17.98466 -17.69939 -17.20184 -16.86715 -16.38685 -16.13391 -15.54969 -14.97664 -14.53352 -14.10277 -13.88208 -13.69790 -13.56571 -13.17359 -13.08797 -13.02078 -12.86512 -12.40878 -12.25478 -12.07433 -11.97834 -11.46453 -11.20730 -10.78042 -10.59609 -10.40809 -9.97516 -9.77297 -9.69858 -9.02244 -8.90591 -8.41605 -8.08383 -7.75482 -6.49778 -4.54556 1.00827 1.88004 1.91934 2.11675 2.74820 3.07720 3.10683 3.24472 3.58344 3.86546 4.07833 4.34287 4.68329 4.88269 4.95818 5.13081 5.26376 5.27738 5.37143 5.38623 5.50889 5.57857 5.64016 5.77167 5.90617 6.02671 6.11653 6.18286 6.19358 6.49377 6.57090 6.74901 6.95622 6.99323 7.07303 7.21653 7.51601 7.66994 7.80063 8.07832 8.15163 8.61977 9.09498 10.60570 Molecular weight = 286.10amu Principal moments of inertia in cm(-1) A = 0.014880 B = 0.006763 C = 0.005297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1881.260675 B = 4139.142442 C = 5284.404793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.144 3.856 3 C -0.247 4.247 4 C 0.264 3.736 5 O -0.299 6.299 6 C 0.204 3.796 7 H 0.053 0.947 8 C -0.538 4.538 9 H 0.089 0.911 10 C 0.095 3.905 11 N -0.856 5.856 12 Si 0.837 3.163 13 H -0.248 1.248 14 H -0.275 1.275 15 H -0.253 1.253 16 C -0.037 4.037 17 C -0.103 4.103 18 C -0.124 4.124 19 C -0.142 4.142 20 C -0.121 4.121 21 C -0.126 4.126 22 C -0.399 4.399 23 C 0.511 3.489 24 O -0.499 6.499 25 O -0.277 6.277 26 H 0.084 0.916 27 H 0.096 0.904 28 H 0.097 0.903 29 H 0.158 0.842 30 H 0.274 0.726 31 H 0.122 0.878 32 H 0.114 0.886 33 H 0.113 0.887 34 H 0.115 0.885 35 H 0.120 0.880 36 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.843 5.446 8.581 13.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.096 3.904 3 C -0.267 4.267 4 C 0.212 3.788 5 O -0.209 6.209 6 C 0.151 3.849 7 H 0.071 0.929 8 C -0.574 4.574 9 H 0.107 0.893 10 C -0.113 4.113 11 N -0.490 5.490 12 Si 0.663 3.337 13 H -0.173 1.173 14 H -0.200 1.200 15 H -0.177 1.177 16 C -0.038 4.038 17 C -0.121 4.121 18 C -0.142 4.142 19 C -0.160 4.160 20 C -0.139 4.139 21 C -0.144 4.144 22 C -0.420 4.420 23 C 0.368 3.632 24 O -0.392 6.392 25 O -0.188 6.188 26 H 0.103 0.897 27 H 0.114 0.886 28 H 0.115 0.885 29 H 0.175 0.825 30 H 0.085 0.915 31 H 0.140 0.860 32 H 0.132 0.868 33 H 0.131 0.869 34 H 0.133 0.867 35 H 0.138 0.862 36 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -8.603 4.865 8.428 12.989 hybrid contribution 1.110 -0.480 0.257 1.237 sum -7.493 4.385 8.686 12.280 Atomic orbital electron populations 1.20914 0.85696 1.05095 1.04527 1.21963 0.94359 0.82259 0.91802 1.20531 0.92149 0.99037 1.14936 1.19510 0.90669 0.86418 0.82229 1.86003 1.24819 1.27655 1.82450 1.19611 0.74864 0.92645 0.97805 0.92907 1.21046 1.32974 1.12434 0.90910 0.89333 1.25011 0.95287 0.95667 0.95365 1.69870 1.35450 1.28255 1.15473 0.87580 0.80882 0.82409 0.82835 1.17301 1.20023 1.17738 1.19909 0.95113 0.95178 0.93559 1.20944 1.00114 0.91677 0.99405 1.21057 0.96476 0.97936 0.98729 1.20949 0.96924 0.97204 1.00901 1.20957 0.99694 0.92646 1.00577 1.21074 0.96402 0.98826 0.98142 1.22685 1.03052 0.90722 1.25517 1.18698 0.77300 0.90824 0.76392 1.90974 1.63702 1.32693 1.51874 1.83367 1.26188 1.33939 1.75350 0.89666 0.88598 0.88492 0.82472 0.91537 0.85958 0.86753 0.86934 0.86703 0.86170 0.82347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.85 10.14 36.00 0.36 -0.49 16 2 C 0.14 2.02 6.94 -35.58 -0.25 1.77 16 3 C -0.25 -3.77 9.61 -39.70 -0.38 -4.15 16 4 C 0.26 5.34 6.65 -38.41 -0.26 5.09 16 5 O -0.30 -6.39 9.03 -17.86 -0.16 -6.55 16 6 C 0.20 4.69 1.84 -29.04 -0.05 4.63 16 7 H 0.05 1.24 3.42 -51.92 -0.18 1.07 16 8 C -0.54 -14.38 8.77 -34.44 -0.30 -14.68 16 9 H 0.09 2.59 8.06 -52.48 -0.42 2.16 16 10 C 0.10 2.63 5.36 -17.82 -0.10 2.54 16 11 N -0.86 -24.96 13.96 55.43 0.77 -24.19 16 12 Si 0.84 20.31 24.86 -169.99 -4.23 16.09 16 13 H -0.25 -6.28 6.53 56.52 0.37 -5.91 16 14 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 15 H -0.25 -5.56 4.69 56.52 0.27 -5.30 16 16 C -0.04 -0.77 4.97 -104.62 -0.52 -1.29 16 17 C -0.10 -1.93 9.36 -39.58 -0.37 -2.30 16 18 C -0.12 -1.96 10.05 -39.58 -0.40 -2.36 16 19 C -0.14 -2.13 10.05 -39.58 -0.40 -2.53 16 20 C -0.12 -1.96 10.05 -39.58 -0.40 -2.35 16 21 C -0.13 -2.43 9.67 -39.58 -0.38 -2.82 16 22 C -0.40 -9.10 8.83 -38.89 -0.34 -9.44 16 23 C 0.51 11.46 7.92 31.40 0.25 11.71 16 24 O -0.50 -12.74 17.94 -19.72 -0.35 -13.09 16 25 O -0.28 -5.05 9.80 -18.62 -0.18 -5.23 16 26 H 0.08 0.64 8.13 -51.93 -0.42 0.21 16 27 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.16 1.86 8.06 -52.49 -0.42 1.43 16 30 H 0.27 7.51 8.31 -40.82 -0.34 7.18 16 31 H 0.12 2.22 7.70 -52.49 -0.40 1.82 16 32 H 0.11 1.47 8.06 -52.49 -0.42 1.05 16 33 H 0.11 1.35 8.06 -52.49 -0.42 0.93 16 34 H 0.11 1.53 8.06 -52.49 -0.42 1.11 16 35 H 0.12 2.32 5.95 -52.48 -0.31 2.00 16 36 H 0.16 3.94 2.21 -52.49 -0.12 3.83 16 LS Contribution 306.43 15.07 4.62 4.62 Total: -1.00 -32.56 306.43 -6.76 -39.32 By element: Atomic # 1 Polarization: 9.40 SS G_CDS: -3.70 Total: 5.71 kcal Atomic # 6 Polarization: -13.14 SS G_CDS: -3.53 Total: -16.67 kcal Atomic # 7 Polarization: -24.96 SS G_CDS: 0.77 Total: -24.19 kcal Atomic # 8 Polarization: -24.17 SS G_CDS: -0.70 Total: -24.87 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -4.23 Total: 16.09 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -32.56 -6.76 -39.32 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226960034.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.280 kcal (2) G-P(sol) polarization free energy of solvation -32.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds