Wall clock time and date at job start Tue Mar 31 2020 06:40:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.34638 * 119.41578 * 2 1 4 4 C 1.41280 * 119.77481 * 179.97438 * 3 2 1 5 5 O 1.35384 * 120.64746 * 180.02562 * 4 3 2 6 6 C 1.42900 * 117.00125 * 5.62262 * 5 4 3 7 7 H 1.09001 * 109.47277 * 34.85052 * 6 5 4 8 8 C 1.50696 * 109.47164 * 274.84466 * 6 5 4 9 9 H 1.07996 * 119.99955 * 331.64479 * 8 6 5 10 10 C 1.37883 * 119.99668 * 151.63796 * 8 6 5 11 11 N 1.31515 * 119.99369 * 180.98732 * 10 8 6 12 12 Si 1.86796 * 120.00038 * 0.98376 * 10 8 6 13 13 H 1.48497 * 109.47174 * 87.68669 * 12 10 8 14 14 H 1.48500 * 109.46836 * 207.68359 * 12 10 8 15 15 H 1.48494 * 109.47324 * 327.68447 * 12 10 8 16 16 C 1.50707 * 109.46858 * 154.84565 * 6 5 4 17 17 C 1.38227 * 119.99890 * 39.88708 * 16 6 5 18 18 C 1.38237 * 120.00175 * 179.80742 * 17 16 6 19 19 C 1.38238 * 119.99459 * 0.39739 * 18 17 16 20 20 C 1.38235 * 120.00248 * 359.85603 * 19 18 17 21 21 C 1.38234 * 119.99916 * 359.95567 * 20 19 18 22 22 C 1.38303 * 118.70264 * 0.27987 * 4 3 2 23 23 C 1.40037 * 118.84685 * 359.48003 * 22 4 3 24 24 O 1.22010 * 119.93042 * 180.25071 * 23 22 4 25 25 O 1.34079 * 119.42180 * 180.02562 * 2 1 3 26 26 H 1.08999 * 109.47076 * 90.00388 * 1 2 3 27 27 H 1.09006 * 109.46581 * 209.99641 * 1 2 3 28 28 H 1.08993 * 109.47276 * 329.99731 * 1 2 3 29 29 H 1.08000 * 120.11270 * 0.02562 * 3 2 1 30 30 H 0.97004 * 119.99543 * 180.02562 * 11 10 8 31 31 H 1.07998 * 120.00493 * 359.97438 * 17 16 6 32 32 H 1.07992 * 120.00681 * 180.23127 * 18 17 16 33 33 H 1.08002 * 120.00288 * 179.83545 * 19 18 17 34 34 H 1.08005 * 120.00410 * 179.97438 * 20 19 18 35 35 H 1.08001 * 120.00217 * 180.02562 * 21 20 19 36 36 H 1.07990 * 120.57693 * 179.72715 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1682 1.1728 0.0000 4 6 3.5810 1.1817 0.0005 5 8 4.2638 2.3507 0.0011 6 6 3.4968 3.5500 0.1258 7 1 2.6433 3.3691 0.7791 8 6 3.0073 3.9768 -1.2340 9 1 3.5743 3.7211 -2.1168 10 6 1.8353 4.6938 -1.3509 11 7 1.3980 5.0495 -2.5391 12 14 0.8688 5.1596 0.1782 13 1 1.3730 6.4520 0.7078 14 1 -0.5693 5.2933 -0.1669 15 1 1.0344 4.1038 1.2092 16 6 4.3579 4.6380 0.7141 17 6 5.6766 4.7649 0.3197 18 6 6.4654 5.7654 0.8563 19 6 5.9375 6.6337 1.7934 20 6 4.6202 6.5035 2.1918 21 6 3.8305 5.5055 1.6522 22 6 4.2528 -0.0272 -0.0048 23 6 3.5089 -1.2136 0.0005 24 8 4.0813 -2.2911 0.0005 25 8 2.1656 -1.1679 -0.0005 26 1 -0.3633 -0.0001 -1.0277 27 1 -0.3633 -0.8901 0.5138 28 1 -0.3633 0.8899 0.5138 29 1 1.6206 2.1036 0.0004 30 1 0.5737 5.5542 -2.6214 31 1 6.0901 4.0842 -0.4097 32 1 7.4946 5.8669 0.5454 33 1 6.5544 7.4137 2.2147 34 1 4.2079 7.1817 2.9243 35 1 2.8011 5.4040 1.9631 36 1 5.3323 -0.0558 -0.0090 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001226960037.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:38 Heat of formation + Delta-G solvation = -54.945969 kcal Electronic energy + Delta-G solvation = -22259.768199 eV Core-core repulsion = 18868.445375 eV Total energy + Delta-G solvation = -3391.322823 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 286.104 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.55561 -39.39039 -38.10876 -37.30218 -33.90462 -33.27961 -32.05196 -31.08603 -30.43437 -27.91885 -27.06104 -24.05325 -23.43405 -22.58504 -21.99077 -20.62488 -17.90309 -17.69599 -17.42587 -16.95147 -16.46138 -16.25361 -15.51975 -15.02702 -14.71805 -14.23737 -13.95695 -13.62678 -13.50902 -13.36107 -13.13769 -12.98536 -12.85606 -12.66113 -12.26753 -12.03274 -12.00283 -11.53411 -11.17944 -11.07271 -10.70791 -10.49943 -10.07804 -9.95532 -9.93720 -9.14227 -9.07475 -8.45231 -8.17425 -7.84196 -6.56554 -4.62649 0.94406 1.81493 1.87568 2.05204 2.69533 2.84832 2.94319 3.01519 3.60359 3.73717 3.91456 4.28768 4.48248 4.74184 4.95259 5.20781 5.25367 5.30109 5.33844 5.41031 5.46210 5.56143 5.63908 5.84948 5.85371 5.94969 6.05504 6.09537 6.25124 6.40811 6.50996 6.56632 6.88728 6.92207 6.94857 7.13154 7.46254 7.58449 7.65309 7.98885 8.01262 8.53386 8.97998 10.54502 Molecular weight = 286.10amu Principal moments of inertia in cm(-1) A = 0.015169 B = 0.006594 C = 0.005190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1845.464810 B = 4245.147142 C = 5393.471546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C 0.150 3.850 3 C -0.283 4.283 4 C 0.275 3.725 5 O -0.287 6.287 6 C 0.201 3.799 7 H 0.055 0.945 8 C -0.538 4.538 9 H 0.092 0.908 10 C 0.089 3.911 11 N -0.868 5.868 12 Si 0.851 3.149 13 H -0.258 1.258 14 H -0.278 1.278 15 H -0.259 1.259 16 C -0.046 4.046 17 C -0.095 4.095 18 C -0.122 4.122 19 C -0.139 4.139 20 C -0.120 4.120 21 C -0.130 4.130 22 C -0.370 4.370 23 C 0.514 3.486 24 O -0.505 6.505 25 O -0.275 6.275 26 H 0.097 0.903 27 H 0.086 0.914 28 H 0.096 0.904 29 H 0.168 0.832 30 H 0.273 0.727 31 H 0.124 0.876 32 H 0.116 0.884 33 H 0.114 0.886 34 H 0.115 0.885 35 H 0.110 0.890 36 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.904 -0.342 7.914 7.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.103 3.897 3 C -0.302 4.302 4 C 0.223 3.777 5 O -0.196 6.196 6 C 0.147 3.853 7 H 0.072 0.928 8 C -0.574 4.574 9 H 0.110 0.890 10 C -0.118 4.118 11 N -0.502 5.502 12 Si 0.677 3.323 13 H -0.183 1.183 14 H -0.204 1.204 15 H -0.184 1.184 16 C -0.047 4.047 17 C -0.113 4.113 18 C -0.140 4.140 19 C -0.157 4.157 20 C -0.138 4.138 21 C -0.149 4.149 22 C -0.392 4.392 23 C 0.371 3.629 24 O -0.400 6.400 25 O -0.186 6.186 26 H 0.116 0.884 27 H 0.105 0.895 28 H 0.115 0.885 29 H 0.185 0.815 30 H 0.084 0.916 31 H 0.142 0.858 32 H 0.134 0.866 33 H 0.132 0.868 34 H 0.133 0.867 35 H 0.128 0.872 36 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -0.678 -0.830 7.767 7.840 hybrid contribution -0.614 0.954 0.494 1.238 sum -1.292 0.125 8.261 8.362 Atomic orbital electron populations 1.20965 0.85752 1.04846 1.05002 1.22035 0.94480 0.82084 0.91145 1.21660 0.94734 0.99901 1.13927 1.19692 0.89721 0.86934 0.81385 1.85958 1.38031 1.12970 1.82663 1.19823 0.89053 0.78291 0.98090 0.92786 1.21181 1.08226 1.37156 0.90885 0.89035 1.24875 0.96466 0.94543 0.95892 1.69845 1.22117 1.35983 1.22302 0.87367 0.80338 0.80914 0.83633 1.18331 1.20378 1.18407 1.20076 0.94266 0.97205 0.93138 1.20927 0.93426 0.97773 0.99204 1.21092 0.99562 0.95736 0.97622 1.20959 0.95532 0.99956 0.99242 1.20927 0.94326 0.98162 1.00365 1.20877 0.99443 0.96928 0.97608 1.21612 1.02153 0.88453 1.26940 1.18493 0.77502 0.90448 0.76458 1.90973 1.63997 1.32381 1.52603 1.83346 1.25881 1.34124 1.75234 0.88415 0.89543 0.88506 0.81477 0.91643 0.85807 0.86576 0.86794 0.86687 0.87189 0.82615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.17 10.19 36.00 0.37 -0.80 16 2 C 0.15 2.31 6.94 -35.58 -0.25 2.06 16 3 C -0.28 -5.02 8.26 -39.70 -0.33 -5.35 16 4 C 0.28 5.33 6.65 -38.40 -0.26 5.08 16 5 O -0.29 -5.96 9.10 -17.84 -0.16 -6.12 16 6 C 0.20 4.30 1.54 -29.03 -0.04 4.25 16 7 H 0.05 1.12 3.45 -51.93 -0.18 0.94 16 8 C -0.54 -13.29 8.33 -34.44 -0.29 -13.58 16 9 H 0.09 2.56 8.06 -52.49 -0.42 2.14 16 10 C 0.09 2.22 5.47 -17.82 -0.10 2.12 16 11 N -0.87 -23.34 13.96 55.43 0.77 -22.56 16 12 Si 0.85 17.80 23.59 -169.99 -4.01 13.79 16 13 H -0.26 -5.38 6.84 56.52 0.39 -5.00 16 14 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 15 H -0.26 -4.87 6.04 56.52 0.34 -4.53 16 16 C -0.05 -0.94 4.85 -104.62 -0.51 -1.44 16 17 C -0.10 -1.79 9.35 -39.59 -0.37 -2.16 16 18 C -0.12 -1.95 10.05 -39.58 -0.40 -2.35 16 19 C -0.14 -2.09 10.05 -39.58 -0.40 -2.49 16 20 C -0.12 -1.93 10.05 -39.58 -0.40 -2.33 16 21 C -0.13 -2.44 8.47 -39.58 -0.34 -2.77 16 22 C -0.37 -7.00 10.01 -38.88 -0.39 -7.39 16 23 C 0.51 10.01 7.92 31.41 0.25 10.26 16 24 O -0.51 -11.04 17.94 -19.72 -0.35 -11.39 16 25 O -0.28 -4.78 9.81 -18.59 -0.18 -4.96 16 26 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 27 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.10 0.91 8.06 -51.93 -0.42 0.50 16 29 H 0.17 3.06 5.22 -52.49 -0.27 2.78 16 30 H 0.27 6.84 8.31 -40.82 -0.34 6.51 16 31 H 0.12 2.30 7.77 -52.49 -0.41 1.90 16 32 H 0.12 1.53 8.06 -52.49 -0.42 1.10 16 33 H 0.11 1.37 8.06 -52.49 -0.42 0.94 16 34 H 0.12 1.52 8.06 -52.48 -0.42 1.10 16 35 H 0.11 2.00 5.37 -52.49 -0.28 1.72 16 36 H 0.16 2.80 8.06 -52.49 -0.42 2.38 16 LS Contribution 307.26 15.07 4.63 4.63 Total: -1.00 -29.07 307.26 -6.47 -35.54 By element: Atomic # 1 Polarization: 11.69 SS G_CDS: -3.73 Total: 7.96 kcal Atomic # 6 Polarization: -13.44 SS G_CDS: -3.44 Total: -16.88 kcal Atomic # 7 Polarization: -23.34 SS G_CDS: 0.77 Total: -22.56 kcal Atomic # 8 Polarization: -21.78 SS G_CDS: -0.70 Total: -22.48 kcal Atomic # 14 Polarization: 17.80 SS G_CDS: -4.01 Total: 13.79 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -29.07 -6.47 -35.54 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226960037.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.406 kcal (2) G-P(sol) polarization free energy of solvation -29.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds