Wall clock time and date at job start Tue Mar 31 2020 06:40:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.34638 * 119.41578 * 2 1 4 4 C 1.41280 * 119.77481 * 179.97438 * 3 2 1 5 5 O 1.35384 * 120.64746 * 180.02562 * 4 3 2 6 6 C 1.42900 * 117.00125 * 5.62262 * 5 4 3 7 7 H 1.09001 * 109.47277 * 34.85052 * 6 5 4 8 8 C 1.50696 * 109.47164 * 274.84466 * 6 5 4 9 9 H 1.07996 * 119.99955 * 331.64479 * 8 6 5 10 10 C 1.37883 * 119.99668 * 151.63796 * 8 6 5 11 11 N 1.31515 * 119.99369 * 180.98732 * 10 8 6 12 12 Si 1.86796 * 120.00038 * 0.98376 * 10 8 6 13 13 H 1.48497 * 109.47174 * 87.68669 * 12 10 8 14 14 H 1.48500 * 109.46836 * 207.68359 * 12 10 8 15 15 H 1.48494 * 109.47324 * 327.68447 * 12 10 8 16 16 C 1.50707 * 109.46858 * 154.84565 * 6 5 4 17 17 C 1.38227 * 119.99890 * 39.88708 * 16 6 5 18 18 C 1.38237 * 120.00175 * 179.80742 * 17 16 6 19 19 C 1.38238 * 119.99459 * 0.39739 * 18 17 16 20 20 C 1.38235 * 120.00248 * 359.85603 * 19 18 17 21 21 C 1.38234 * 119.99916 * 359.95567 * 20 19 18 22 22 C 1.38303 * 118.70264 * 0.27987 * 4 3 2 23 23 C 1.40037 * 118.84685 * 359.48003 * 22 4 3 24 24 O 1.22010 * 119.93042 * 180.25071 * 23 22 4 25 25 O 1.34079 * 119.42180 * 180.02562 * 2 1 3 26 26 H 1.08999 * 109.47076 * 90.00388 * 1 2 3 27 27 H 1.09006 * 109.46581 * 209.99641 * 1 2 3 28 28 H 1.08993 * 109.47276 * 329.99731 * 1 2 3 29 29 H 1.08000 * 120.11270 * 0.02562 * 3 2 1 30 30 H 0.97004 * 119.99543 * 180.02562 * 11 10 8 31 31 H 1.07998 * 120.00493 * 359.97438 * 17 16 6 32 32 H 1.07992 * 120.00681 * 180.23127 * 18 17 16 33 33 H 1.08002 * 120.00288 * 179.83545 * 19 18 17 34 34 H 1.08005 * 120.00410 * 179.97438 * 20 19 18 35 35 H 1.08001 * 120.00217 * 180.02562 * 21 20 19 36 36 H 1.07990 * 120.57693 * 179.72715 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1682 1.1728 0.0000 4 6 3.5810 1.1817 0.0005 5 8 4.2638 2.3507 0.0011 6 6 3.4968 3.5500 0.1258 7 1 2.6433 3.3691 0.7791 8 6 3.0073 3.9768 -1.2340 9 1 3.5743 3.7211 -2.1168 10 6 1.8353 4.6938 -1.3509 11 7 1.3980 5.0495 -2.5391 12 14 0.8688 5.1596 0.1782 13 1 1.3730 6.4520 0.7078 14 1 -0.5693 5.2933 -0.1669 15 1 1.0344 4.1038 1.2092 16 6 4.3579 4.6380 0.7141 17 6 5.6766 4.7649 0.3197 18 6 6.4654 5.7654 0.8563 19 6 5.9375 6.6337 1.7934 20 6 4.6202 6.5035 2.1918 21 6 3.8305 5.5055 1.6522 22 6 4.2528 -0.0272 -0.0048 23 6 3.5089 -1.2136 0.0005 24 8 4.0813 -2.2911 0.0005 25 8 2.1656 -1.1679 -0.0005 26 1 -0.3633 -0.0001 -1.0277 27 1 -0.3633 -0.8901 0.5138 28 1 -0.3633 0.8899 0.5138 29 1 1.6206 2.1036 0.0004 30 1 0.5737 5.5542 -2.6214 31 1 6.0901 4.0842 -0.4097 32 1 7.4946 5.8669 0.5454 33 1 6.5544 7.4137 2.2147 34 1 4.2079 7.1817 2.9243 35 1 2.8011 5.4040 1.9631 36 1 5.3323 -0.0558 -0.0090 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001226960037.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:37 Heat of formation + Delta-G solvation = -71.166838 kcal Electronic energy + Delta-G solvation = -22260.471588 eV Core-core repulsion = 18868.445375 eV Total energy + Delta-G solvation = -3392.026213 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 286.104 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -43.03198 -40.90684 -39.52249 -38.86247 -35.49736 -34.87115 -33.52037 -32.52630 -31.74911 -29.44083 -28.42911 -25.71326 -24.84076 -24.04243 -23.33147 -22.08504 -19.55374 -19.27636 -19.01087 -18.44656 -17.93001 -17.62985 -17.02604 -16.63445 -16.14745 -15.67451 -15.47102 -15.03598 -14.91483 -14.71365 -14.66803 -14.31322 -14.25621 -13.94595 -13.62943 -13.30917 -13.23458 -13.08344 -12.72082 -12.49170 -12.17002 -11.96486 -11.80466 -11.54979 -11.48463 -10.95497 -10.61842 -9.77484 -9.57447 -9.34831 -8.46871 -6.59351 -0.47810 0.47600 0.54366 0.55469 1.21039 1.27674 1.30240 1.36287 2.05714 2.16537 2.23027 2.81338 3.01874 3.22055 3.49280 3.84645 3.95491 4.02105 4.14080 4.21355 4.26015 4.31578 4.41508 4.60806 4.61826 4.70777 4.77007 4.81094 5.01826 5.06071 5.12315 5.17857 5.20121 5.58789 5.63842 5.72790 5.88841 6.11872 6.15333 6.26417 6.44936 6.51542 7.06511 8.68423 Molecular weight = 286.10amu Principal moments of inertia in cm(-1) A = 0.015169 B = 0.006594 C = 0.005190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1845.464810 B = 4245.147142 C = 5393.471546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C 0.178 3.822 3 C -0.312 4.312 4 C 0.267 3.733 5 O -0.299 6.299 6 C 0.211 3.789 7 H 0.064 0.936 8 C -0.540 4.540 9 H 0.037 0.963 10 C 0.042 3.958 11 N -0.921 5.921 12 Si 0.906 3.094 13 H -0.252 1.252 14 H -0.273 1.273 15 H -0.226 1.226 16 C -0.079 4.079 17 C -0.120 4.120 18 C -0.121 4.121 19 C -0.129 4.129 20 C -0.119 4.119 21 C -0.147 4.147 22 C -0.380 4.380 23 C 0.514 3.486 24 O -0.535 6.535 25 O -0.270 6.270 26 H 0.114 0.886 27 H 0.114 0.886 28 H 0.116 0.884 29 H 0.165 0.835 30 H 0.275 0.725 31 H 0.108 0.892 32 H 0.145 0.855 33 H 0.155 0.845 34 H 0.150 0.850 35 H 0.115 0.885 36 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.979 0.843 10.633 10.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.130 3.870 3 C -0.331 4.331 4 C 0.215 3.785 5 O -0.209 6.209 6 C 0.157 3.843 7 H 0.082 0.918 8 C -0.577 4.577 9 H 0.056 0.944 10 C -0.160 4.160 11 N -0.557 5.557 12 Si 0.728 3.272 13 H -0.177 1.177 14 H -0.198 1.198 15 H -0.150 1.150 16 C -0.080 4.080 17 C -0.138 4.138 18 C -0.139 4.139 19 C -0.146 4.146 20 C -0.136 4.136 21 C -0.165 4.165 22 C -0.401 4.401 23 C 0.373 3.627 24 O -0.432 6.432 25 O -0.180 6.180 26 H 0.132 0.868 27 H 0.132 0.868 28 H 0.135 0.865 29 H 0.182 0.818 30 H 0.085 0.915 31 H 0.126 0.874 32 H 0.162 0.838 33 H 0.173 0.827 34 H 0.168 0.832 35 H 0.133 0.867 36 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -1.744 0.343 10.498 10.648 hybrid contribution -0.207 0.594 -0.396 0.743 sum -1.951 0.937 10.102 10.331 Atomic orbital electron populations 1.21295 0.81541 1.07205 1.06639 1.22909 0.96417 0.80608 0.87072 1.21653 0.93840 1.00811 1.16844 1.19975 0.90843 0.86526 0.81164 1.85937 1.38520 1.13415 1.83041 1.19663 0.89842 0.78625 0.96153 0.91807 1.21132 1.08109 1.37375 0.91089 0.94429 1.25645 0.97242 0.94041 0.99072 1.69994 1.23049 1.37659 1.25047 0.86476 0.78673 0.81672 0.80350 1.17667 1.19802 1.14975 1.20111 0.95016 0.97639 0.95189 1.21000 0.93778 0.99111 0.99908 1.21445 1.00601 0.94652 0.97200 1.21462 0.95603 0.99822 0.97760 1.21386 0.94525 0.97508 1.00230 1.21083 1.00171 0.97539 0.97754 1.21583 1.02357 0.88327 1.27870 1.18436 0.78149 0.89968 0.76133 1.90949 1.64997 1.33086 1.54170 1.83375 1.24884 1.35082 1.74634 0.86765 0.86775 0.86523 0.81769 0.91502 0.87417 0.83769 0.82689 0.83187 0.86724 0.82544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.97 10.19 71.24 0.73 -1.25 16 2 C 0.18 5.17 6.94 24.86 0.17 5.34 16 3 C -0.31 -10.97 8.26 22.19 0.18 -10.78 16 4 C 0.27 10.63 6.65 23.03 0.15 10.79 16 5 O -0.30 -13.00 9.10 -86.76 -0.79 -13.79 16 6 C 0.21 9.21 1.54 29.10 0.04 9.26 16 7 H 0.06 2.61 3.45 -2.39 -0.01 2.60 16 8 C -0.54 -27.99 8.33 25.60 0.21 -27.78 16 9 H 0.04 2.28 8.06 -2.91 -0.02 2.26 16 10 C 0.04 2.14 5.47 84.66 0.46 2.61 16 11 N -0.92 -51.34 13.96 21.45 0.30 -51.04 16 12 Si 0.91 35.78 23.59 68.60 1.62 37.40 16 13 H -0.25 -9.70 6.84 99.48 0.68 -9.02 16 14 H -0.27 -10.46 7.11 99.48 0.71 -9.76 16 15 H -0.23 -7.64 6.04 99.48 0.60 -7.04 16 16 C -0.08 -3.20 4.85 -19.86 -0.10 -3.30 16 17 C -0.12 -4.55 9.35 22.27 0.21 -4.34 16 18 C -0.12 -3.63 10.05 22.27 0.22 -3.40 16 19 C -0.13 -3.37 10.05 22.27 0.22 -3.15 16 20 C -0.12 -3.38 10.05 22.27 0.22 -3.16 16 21 C -0.15 -5.21 8.47 22.27 0.19 -5.02 16 22 C -0.38 -14.83 10.01 22.72 0.23 -14.60 16 23 C 0.51 20.20 7.92 68.26 0.54 20.74 16 24 O -0.54 -23.70 17.94 18.20 0.33 -23.37 16 25 O -0.27 -9.08 9.81 22.22 0.22 -8.86 16 26 H 0.11 1.81 8.14 -2.39 -0.02 1.79 16 27 H 0.11 1.48 8.14 -2.38 -0.02 1.46 16 28 H 0.12 1.72 8.06 -2.39 -0.02 1.70 16 29 H 0.16 5.90 5.22 -2.91 -0.02 5.88 16 30 H 0.28 14.21 8.31 -92.71 -0.77 13.44 16 31 H 0.11 4.28 7.77 -2.91 -0.02 4.25 16 32 H 0.14 3.40 8.06 -2.91 -0.02 3.38 16 33 H 0.16 2.81 8.06 -2.91 -0.02 2.79 16 34 H 0.15 3.18 8.06 -2.91 -0.02 3.16 16 35 H 0.11 3.84 5.37 -2.91 -0.02 3.83 16 36 H 0.16 5.92 8.06 -2.92 -0.02 5.90 16 Total: -1.00 -67.43 307.26 6.35 -61.08 By element: Atomic # 1 Polarization: 25.64 SS G_CDS: 0.98 Total: 26.63 kcal Atomic # 6 Polarization: -31.73 SS G_CDS: 3.70 Total: -28.04 kcal Atomic # 7 Polarization: -51.34 SS G_CDS: 0.30 Total: -51.04 kcal Atomic # 8 Polarization: -45.78 SS G_CDS: -0.24 Total: -46.03 kcal Atomic # 14 Polarization: 35.78 SS G_CDS: 1.62 Total: 37.40 kcal Total: -67.43 6.35 -61.08 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226960037.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.086 kcal (2) G-P(sol) polarization free energy of solvation -67.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds