Wall clock time and date at job start Tue Mar 31 2020 06:34:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 120.00495 * 2 1 4 4 H 1.48498 * 109.46855 * 270.00019 * 3 2 1 5 5 H 1.48500 * 109.46792 * 29.99839 * 3 2 1 6 6 H 1.48495 * 109.47235 * 149.99798 * 3 2 1 7 7 C 1.37881 * 119.99652 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00165 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00010 * 0.02562 * 7 2 1 10 10 H 1.09004 * 109.47321 * 180.02562 * 9 7 2 11 11 O 1.42897 * 109.47379 * 59.99631 * 9 7 2 12 12 C 1.36096 * 116.99936 * 90.00051 * 11 9 7 13 13 C 1.38985 * 120.08902 * 269.72821 * 12 11 9 14 14 O 1.35990 * 120.04499 * 0.02562 * 13 12 11 15 15 C 1.38667 * 119.90918 * 179.71947 * 13 12 11 16 16 C 1.38229 * 120.08639 * 0.55605 * 15 13 12 17 17 C 1.38227 * 120.18690 * 359.71875 * 16 15 13 18 18 C 1.38671 * 120.08228 * 0.02562 * 17 16 15 19 19 O 1.36005 * 120.04465 * 180.02562 * 18 17 16 20 20 C 1.50703 * 109.47293 * 299.99491 * 9 7 2 21 21 C 1.38235 * 120.00292 * 265.00268 * 20 9 7 22 22 C 1.38230 * 119.99899 * 179.97438 * 21 20 9 23 23 C 1.38235 * 120.00326 * 359.95697 * 22 21 20 24 24 C 1.38234 * 119.99814 * 359.97438 * 23 22 21 25 25 C 1.38234 * 119.99503 * 84.97561 * 20 9 7 26 26 H 0.97001 * 119.99333 * 359.97438 * 1 2 3 27 27 H 0.96700 * 114.00372 * 89.99300 * 14 13 12 28 28 H 1.07992 * 119.95812 * 180.25246 * 15 13 12 29 29 H 1.08000 * 119.90860 * 179.74456 * 16 15 13 30 30 H 1.07997 * 119.96408 * 179.97438 * 17 16 15 31 31 H 0.96697 * 113.99734 * 269.98180 * 19 18 17 32 32 H 1.08001 * 119.99730 * 359.97438 * 21 20 9 33 33 H 1.08000 * 120.00376 * 179.97438 * 22 21 20 34 34 H 1.08000 * 120.00616 * 179.72578 * 23 22 21 35 35 H 1.08001 * 120.00299 * 179.97438 * 24 23 22 36 36 H 1.07997 * 120.00455 * 0.02562 * 25 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4400 0.7000 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2509 -2.4992 0.0005 10 1 1.9591 -3.3278 0.0015 11 8 0.4297 -2.5751 -1.1665 12 6 0.9843 -3.1332 -2.2769 13 6 1.6568 -2.3361 -3.1956 14 8 1.7624 -0.9966 -2.9862 15 6 2.2255 -2.9095 -4.3229 16 6 2.1143 -4.2702 -4.5393 17 6 1.4413 -5.0657 -3.6310 18 6 0.8744 -4.5008 -2.4985 19 8 0.2129 -5.2843 -1.6051 20 6 0.3841 -2.5788 1.2307 21 6 0.8466 -3.2255 2.3616 22 6 0.0517 -3.2980 3.4901 23 6 -1.2055 -2.7230 3.4882 24 6 -1.6674 -2.0751 2.3579 25 6 -0.8734 -2.0046 1.2285 26 1 -0.4849 0.8401 0.0004 27 1 2.5475 -0.7375 -2.4845 28 1 2.7518 -2.2914 -5.0351 29 1 2.5547 -4.7131 -5.4203 30 1 1.3562 -6.1283 -3.8038 31 1 -0.7317 -5.3794 -1.7891 32 1 1.8290 -3.6740 2.3633 33 1 0.4128 -3.8035 4.3735 34 1 -1.8283 -2.7835 4.3684 35 1 -2.6497 -1.6263 2.3562 36 1 -1.2348 -1.4993 0.3450 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001227031521.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:41 Heat of formation + Delta-G solvation = -57.814785 kcal Electronic energy + Delta-G solvation = -22950.172140 eV Core-core repulsion = 19558.724915 eV Total energy + Delta-G solvation = -3391.447224 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 286.104 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.70047 -38.16122 -37.03306 -36.18166 -34.99694 -33.00820 -30.61846 -29.66712 -28.77572 -28.45050 -26.77236 -23.26481 -22.00964 -21.77677 -21.22857 -20.16206 -18.31597 -17.18656 -16.81629 -16.07804 -15.86186 -15.61940 -14.87712 -14.69617 -14.40874 -13.97188 -13.79231 -13.39252 -13.09587 -12.76557 -12.48173 -12.27168 -11.87256 -11.65244 -11.49728 -11.20755 -11.06488 -10.99899 -10.63309 -10.48259 -10.25199 -9.98700 -9.68261 -9.40600 -8.84104 -8.29178 -8.11861 -7.85972 -7.72554 -7.44619 -6.03180 -4.37587 1.61582 1.72500 2.48626 2.63241 3.19485 3.28224 3.28753 3.90767 4.25336 4.55510 4.87191 5.04262 5.08996 5.21134 5.31934 5.63491 5.72645 5.82380 5.92748 5.99026 6.18299 6.29732 6.38774 6.58876 6.64493 6.72041 6.78396 6.88729 6.97462 7.06100 7.10772 7.30936 7.51557 7.56883 7.80788 7.97852 8.01901 8.12165 8.28348 8.41745 8.59297 9.04143 9.38122 10.80846 Molecular weight = 286.10amu Principal moments of inertia in cm(-1) A = 0.013759 B = 0.008474 C = 0.005764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2034.548106 B = 3303.240648 C = 4856.886573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.832 5.832 2 C 0.097 3.903 3 Si 0.885 3.115 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.274 1.274 7 C -0.553 4.553 8 H 0.062 0.938 9 C 0.258 3.742 10 H 0.019 0.981 11 O -0.310 6.310 12 C 0.089 3.911 13 C 0.110 3.890 14 O -0.476 6.476 15 C -0.154 4.154 16 C -0.119 4.119 17 C -0.152 4.152 18 C 0.076 3.924 19 O -0.489 6.489 20 C -0.037 4.037 21 C -0.126 4.126 22 C -0.148 4.148 23 C -0.145 4.145 24 C -0.153 4.153 25 C -0.046 4.046 26 H 0.264 0.736 27 H 0.390 0.610 28 H 0.123 0.877 29 H 0.122 0.878 30 H 0.123 0.877 31 H 0.384 0.616 32 H 0.103 0.897 33 H 0.102 0.898 34 H 0.099 0.901 35 H 0.101 0.899 36 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.772 -6.181 -3.851 7.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.466 5.466 2 C -0.112 4.112 3 Si 0.712 3.288 4 H -0.199 1.199 5 H -0.209 1.209 6 H -0.199 1.199 7 C -0.589 4.589 8 H 0.080 0.920 9 C 0.205 3.795 10 H 0.037 0.963 11 O -0.227 6.227 12 C 0.042 3.958 13 C 0.064 3.936 14 O -0.287 6.287 15 C -0.172 4.172 16 C -0.138 4.138 17 C -0.170 4.170 18 C 0.031 3.969 19 O -0.298 6.298 20 C -0.037 4.037 21 C -0.144 4.144 22 C -0.167 4.167 23 C -0.164 4.164 24 C -0.172 4.172 25 C -0.064 4.064 26 H 0.075 0.925 27 H 0.248 0.752 28 H 0.141 0.859 29 H 0.140 0.860 30 H 0.141 0.859 31 H 0.239 0.761 32 H 0.121 0.879 33 H 0.120 0.880 34 H 0.117 0.883 35 H 0.120 0.880 36 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 0.465 -5.984 -3.847 7.129 hybrid contribution 0.671 1.041 0.312 1.277 sum 1.136 -4.943 -3.536 6.182 Atomic orbital electron populations 1.69796 1.05965 1.26268 1.44540 1.24926 0.94658 0.98904 0.92705 0.86715 0.80032 0.83474 0.78555 1.19888 1.20934 1.19889 1.21397 0.92823 0.90665 1.54000 0.91974 1.18769 0.86596 0.94841 0.79279 0.96270 1.86238 1.39904 1.79056 1.17499 1.19657 0.96234 0.89069 0.90827 1.18799 0.96375 0.84664 0.93750 1.84780 1.49954 1.17112 1.76841 1.21367 1.01971 0.95130 0.98770 1.20653 1.00750 0.93095 0.99284 1.21215 1.01815 1.00011 0.93987 1.18885 0.99134 0.88416 0.90480 1.84805 1.25160 1.68828 1.51053 1.19850 0.94332 0.94484 0.95076 1.20761 0.99018 1.00898 0.93747 1.20690 0.95346 1.02987 0.97654 1.20817 0.96392 1.01272 0.97877 1.21138 0.99662 1.01678 0.94679 1.21828 0.92783 0.92547 0.99284 0.92512 0.75183 0.85864 0.86039 0.85943 0.76073 0.87868 0.87980 0.88266 0.88039 0.82006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -21.58 8.53 55.43 0.47 -21.11 16 2 C 0.10 2.42 5.04 -17.82 -0.09 2.33 16 3 Si 0.89 19.68 29.54 -169.99 -5.02 14.66 16 4 H -0.27 -5.97 7.11 56.52 0.40 -5.56 16 5 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 6 H -0.27 -6.09 7.11 56.52 0.40 -5.68 16 7 C -0.55 -13.88 7.05 -34.44 -0.24 -14.12 16 8 H 0.06 1.53 7.81 -52.48 -0.41 1.12 16 9 C 0.26 6.32 2.65 -29.03 -0.08 6.24 16 10 H 0.02 0.48 7.82 -51.93 -0.41 0.07 16 11 O -0.31 -7.53 7.81 -45.30 -0.35 -7.89 16 12 C 0.09 1.91 5.58 -39.03 -0.22 1.69 16 13 C 0.11 2.22 6.71 -39.15 -0.26 1.96 16 14 O -0.48 -10.20 12.44 -34.29 -0.43 -10.63 16 15 C -0.15 -2.51 9.98 -39.43 -0.39 -2.91 16 16 C -0.12 -1.73 10.04 -39.59 -0.40 -2.13 16 17 C -0.15 -2.35 9.98 -39.43 -0.39 -2.74 16 18 C 0.08 1.42 6.71 -39.15 -0.26 1.16 16 19 O -0.49 -8.71 13.29 -34.34 -0.46 -9.17 16 20 C -0.04 -0.88 4.80 -104.62 -0.50 -1.39 16 21 C -0.13 -2.75 9.68 -39.59 -0.38 -3.13 16 22 C -0.15 -2.92 10.05 -39.59 -0.40 -3.32 16 23 C -0.15 -2.82 10.05 -39.58 -0.40 -3.22 16 24 C -0.15 -3.22 10.05 -39.58 -0.40 -3.61 16 25 C -0.05 -1.08 7.45 -39.58 -0.30 -1.38 16 26 H 0.26 6.66 8.31 -40.82 -0.34 6.32 16 27 H 0.39 7.76 7.85 45.56 0.36 8.12 16 28 H 0.12 1.73 8.06 -52.49 -0.42 1.31 16 29 H 0.12 1.35 8.06 -52.49 -0.42 0.93 16 30 H 0.12 1.58 8.06 -52.49 -0.42 1.16 16 31 H 0.38 5.17 9.06 45.56 0.41 5.58 16 32 H 0.10 2.10 8.06 -52.49 -0.42 1.68 16 33 H 0.10 1.70 8.06 -52.49 -0.42 1.28 16 34 H 0.10 1.63 8.06 -52.49 -0.42 1.20 16 35 H 0.10 1.90 8.06 -52.49 -0.42 1.48 16 36 H 0.16 4.16 5.53 -52.49 -0.29 3.87 16 LS Contribution 311.52 15.07 4.69 4.69 Total: -1.00 -28.96 311.52 -8.23 -37.19 By element: Atomic # 1 Polarization: 19.25 SS G_CDS: -2.43 Total: 16.82 kcal Atomic # 6 Polarization: -19.86 SS G_CDS: -4.71 Total: -24.57 kcal Atomic # 7 Polarization: -21.58 SS G_CDS: 0.47 Total: -21.11 kcal Atomic # 8 Polarization: -26.45 SS G_CDS: -1.24 Total: -27.68 kcal Atomic # 14 Polarization: 19.68 SS G_CDS: -5.02 Total: 14.66 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -28.96 -8.23 -37.19 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001227031521.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.623 kcal (2) G-P(sol) polarization free energy of solvation -28.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds