Wall clock time and date at job start Tue Mar 31 2020 06:34:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 120.00495 * 2 1 4 4 H 1.48498 * 109.46855 * 270.00019 * 3 2 1 5 5 H 1.48500 * 109.46792 * 29.99839 * 3 2 1 6 6 H 1.48495 * 109.47235 * 149.99798 * 3 2 1 7 7 C 1.37881 * 119.99652 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00165 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00010 * 0.02562 * 7 2 1 10 10 H 1.09004 * 109.47321 * 180.02562 * 9 7 2 11 11 O 1.42897 * 109.47379 * 59.99631 * 9 7 2 12 12 C 1.36096 * 116.99936 * 90.00051 * 11 9 7 13 13 C 1.38985 * 120.08902 * 269.72821 * 12 11 9 14 14 O 1.35990 * 120.04499 * 0.02562 * 13 12 11 15 15 C 1.38667 * 119.90918 * 179.71947 * 13 12 11 16 16 C 1.38229 * 120.08639 * 0.55605 * 15 13 12 17 17 C 1.38227 * 120.18690 * 359.71875 * 16 15 13 18 18 C 1.38671 * 120.08228 * 0.02562 * 17 16 15 19 19 O 1.36005 * 120.04465 * 180.02562 * 18 17 16 20 20 C 1.50703 * 109.47293 * 299.99491 * 9 7 2 21 21 C 1.38235 * 120.00292 * 265.00268 * 20 9 7 22 22 C 1.38230 * 119.99899 * 179.97438 * 21 20 9 23 23 C 1.38235 * 120.00326 * 359.95697 * 22 21 20 24 24 C 1.38234 * 119.99814 * 359.97438 * 23 22 21 25 25 C 1.38234 * 119.99503 * 84.97561 * 20 9 7 26 26 H 0.97001 * 119.99333 * 359.97438 * 1 2 3 27 27 H 0.96700 * 114.00372 * 89.99300 * 14 13 12 28 28 H 1.07992 * 119.95812 * 180.25246 * 15 13 12 29 29 H 1.08000 * 119.90860 * 179.74456 * 16 15 13 30 30 H 1.07997 * 119.96408 * 179.97438 * 17 16 15 31 31 H 0.96697 * 113.99734 * 269.98180 * 19 18 17 32 32 H 1.08001 * 119.99730 * 359.97438 * 21 20 9 33 33 H 1.08000 * 120.00376 * 179.97438 * 22 21 20 34 34 H 1.08000 * 120.00616 * 179.72578 * 23 22 21 35 35 H 1.08001 * 120.00299 * 179.97438 * 24 23 22 36 36 H 1.07997 * 120.00455 * 0.02562 * 25 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4400 0.7000 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2509 -2.4992 0.0005 10 1 1.9591 -3.3278 0.0015 11 8 0.4297 -2.5751 -1.1665 12 6 0.9843 -3.1332 -2.2769 13 6 1.6568 -2.3361 -3.1956 14 8 1.7624 -0.9966 -2.9862 15 6 2.2255 -2.9095 -4.3229 16 6 2.1143 -4.2702 -4.5393 17 6 1.4413 -5.0657 -3.6310 18 6 0.8744 -4.5008 -2.4985 19 8 0.2129 -5.2843 -1.6051 20 6 0.3841 -2.5788 1.2307 21 6 0.8466 -3.2255 2.3616 22 6 0.0517 -3.2980 3.4901 23 6 -1.2055 -2.7230 3.4882 24 6 -1.6674 -2.0751 2.3579 25 6 -0.8734 -2.0046 1.2285 26 1 -0.4849 0.8401 0.0004 27 1 2.5475 -0.7375 -2.4845 28 1 2.7518 -2.2914 -5.0351 29 1 2.5547 -4.7131 -5.4203 30 1 1.3562 -6.1283 -3.8038 31 1 -0.7317 -5.3794 -1.7891 32 1 1.8290 -3.6740 2.3633 33 1 0.4128 -3.8035 4.3735 34 1 -1.8283 -2.7835 4.3684 35 1 -2.6497 -1.6263 2.3562 36 1 -1.2348 -1.4993 0.3450 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001227031521.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:41 Heat of formation + Delta-G solvation = -76.052614 kcal Electronic energy + Delta-G solvation = -22950.962991 eV Core-core repulsion = 19558.724915 eV Total energy + Delta-G solvation = -3392.238076 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 286.104 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.16976 -39.80225 -38.50276 -37.81304 -36.43200 -34.83668 -32.34037 -31.32343 -30.12843 -29.92890 -28.58091 -25.03737 -23.41213 -23.30882 -22.79290 -21.86444 -19.78019 -18.89851 -18.33350 -17.69148 -17.47484 -17.13158 -16.64197 -16.15918 -15.95455 -15.50143 -15.33486 -15.01325 -14.77404 -14.42754 -13.95026 -13.80001 -13.44016 -13.24599 -13.14205 -12.83800 -12.73876 -12.50366 -12.30644 -12.15932 -11.85935 -11.57109 -11.31563 -11.17275 -10.71271 -9.99602 -9.47418 -9.45041 -9.31323 -9.13089 -7.90583 -6.32246 0.26248 0.33015 0.81908 0.98378 1.40925 1.43633 1.50135 2.39827 2.55029 3.15314 3.22441 3.32468 3.46621 3.71601 4.16005 4.30551 4.34060 4.36846 4.47104 4.53692 4.61962 4.75869 4.84696 4.94572 5.12664 5.19352 5.37048 5.43103 5.44831 5.56704 5.61912 5.67046 5.81985 5.87067 6.04055 6.13459 6.34949 6.51950 6.63867 6.83437 6.90515 7.31510 7.50857 8.90274 Molecular weight = 286.10amu Principal moments of inertia in cm(-1) A = 0.013759 B = 0.008474 C = 0.005764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2034.548106 B = 3303.240648 C = 4856.886573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.851 5.851 2 C 0.065 3.935 3 Si 0.938 3.062 4 H -0.267 1.267 5 H -0.289 1.289 6 H -0.272 1.272 7 C -0.564 4.564 8 H 0.055 0.945 9 C 0.264 3.736 10 H -0.002 1.002 11 O -0.329 6.329 12 C 0.038 3.962 13 C 0.081 3.919 14 O -0.494 6.494 15 C -0.150 4.150 16 C -0.098 4.098 17 C -0.143 4.143 18 C 0.067 3.933 19 O -0.503 6.503 20 C -0.064 4.064 21 C -0.143 4.143 22 C -0.142 4.142 23 C -0.139 4.139 24 C -0.159 4.159 25 C -0.066 4.066 26 H 0.259 0.741 27 H 0.389 0.611 28 H 0.149 0.851 29 H 0.171 0.829 30 H 0.157 0.843 31 H 0.400 0.600 32 H 0.109 0.891 33 H 0.139 0.861 34 H 0.139 0.861 35 H 0.120 0.880 36 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.201 -7.562 -4.141 8.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.485 5.485 2 C -0.142 4.142 3 Si 0.764 3.236 4 H -0.192 1.192 5 H -0.215 1.215 6 H -0.197 1.197 7 C -0.600 4.600 8 H 0.073 0.927 9 C 0.211 3.789 10 H 0.016 0.984 11 O -0.246 6.246 12 C -0.008 4.008 13 C 0.035 3.965 14 O -0.305 6.305 15 C -0.168 4.168 16 C -0.116 4.116 17 C -0.161 4.161 18 C 0.022 3.978 19 O -0.314 6.314 20 C -0.065 4.065 21 C -0.161 4.161 22 C -0.160 4.160 23 C -0.157 4.157 24 C -0.177 4.177 25 C -0.085 4.085 26 H 0.069 0.931 27 H 0.246 0.754 28 H 0.167 0.833 29 H 0.188 0.812 30 H 0.175 0.825 31 H 0.257 0.743 32 H 0.127 0.873 33 H 0.157 0.843 34 H 0.157 0.843 35 H 0.138 0.862 36 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 0.887 -7.385 -4.155 8.520 hybrid contribution 0.529 1.306 0.332 1.447 sum 1.416 -6.079 -3.823 7.320 Atomic orbital electron populations 1.70004 1.06844 1.26169 1.45495 1.25428 0.95202 1.01060 0.92478 0.85898 0.78840 0.80285 0.78611 1.19214 1.21497 1.19696 1.21472 0.92502 0.91540 1.54515 0.92700 1.18612 0.86527 0.93583 0.80226 0.98406 1.86180 1.40398 1.79869 1.18170 1.20168 0.98981 0.90842 0.90806 1.19185 0.97931 0.84100 0.95251 1.84753 1.50307 1.18522 1.76895 1.21658 1.01091 0.96464 0.97599 1.21210 0.98479 0.91979 0.99932 1.21595 1.00246 1.01805 0.92453 1.19099 0.99590 0.87502 0.91590 1.84746 1.26550 1.68406 1.51738 1.19998 0.94801 0.95999 0.95664 1.20992 0.99852 1.01188 0.94107 1.21112 0.95018 1.02025 0.97866 1.21238 0.96597 0.99476 0.98376 1.21387 1.00201 1.01727 0.94411 1.21610 0.93462 0.93772 0.99619 0.93110 0.75355 0.83348 0.81192 0.82542 0.74258 0.87320 0.84298 0.84285 0.86154 0.84745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -46.19 8.53 21.45 0.18 -46.01 16 2 C 0.06 3.36 5.04 84.66 0.43 3.79 16 3 Si 0.94 41.62 29.54 68.60 2.03 43.65 16 4 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 5 H -0.29 -12.98 7.11 99.48 0.71 -12.27 16 6 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 7 C -0.56 -29.73 7.05 25.60 0.18 -29.55 16 8 H 0.05 2.86 7.81 -2.91 -0.02 2.83 16 9 C 0.26 13.66 2.65 29.10 0.08 13.74 16 10 H 0.00 -0.11 7.82 -2.38 -0.02 -0.13 16 11 O -0.33 -16.95 7.81 -70.49 -0.55 -17.50 16 12 C 0.04 1.69 5.58 22.63 0.13 1.82 16 13 C 0.08 3.32 6.71 22.55 0.15 3.47 16 14 O -0.49 -22.09 12.44 -79.50 -0.99 -23.08 16 15 C -0.15 -4.62 9.98 22.37 0.22 -4.40 16 16 C -0.10 -2.47 10.04 22.26 0.22 -2.24 16 17 C -0.14 -4.02 9.98 22.37 0.22 -3.80 16 18 C 0.07 2.51 6.71 22.55 0.15 2.66 16 19 O -0.50 -18.10 13.29 -79.67 -1.06 -19.16 16 20 C -0.06 -3.19 4.80 -19.87 -0.10 -3.29 16 21 C -0.14 -6.29 9.68 22.27 0.22 -6.08 16 22 C -0.14 -5.30 10.05 22.27 0.22 -5.07 16 23 C -0.14 -5.05 10.05 22.27 0.22 -4.82 16 24 C -0.16 -6.60 10.05 22.27 0.22 -6.37 16 25 C -0.07 -3.22 7.45 22.27 0.17 -3.06 16 26 H 0.26 13.66 8.31 -92.71 -0.77 12.89 16 27 H 0.39 16.40 7.85 -74.06 -0.58 15.82 16 28 H 0.15 3.77 8.06 -2.91 -0.02 3.74 16 29 H 0.17 2.71 8.06 -2.91 -0.02 2.69 16 30 H 0.16 3.35 8.06 -2.91 -0.02 3.33 16 31 H 0.40 10.94 9.06 -74.06 -0.67 10.27 16 32 H 0.11 4.50 8.06 -2.91 -0.02 4.48 16 33 H 0.14 4.10 8.06 -2.91 -0.02 4.08 16 34 H 0.14 3.94 8.06 -2.91 -0.02 3.92 16 35 H 0.12 4.41 8.06 -2.91 -0.02 4.38 16 36 H 0.14 7.34 5.53 -2.91 -0.02 7.33 16 Total: -1.00 -66.08 311.52 2.23 -63.85 By element: Atomic # 1 Polarization: 41.57 SS G_CDS: -0.12 Total: 41.45 kcal Atomic # 6 Polarization: -45.95 SS G_CDS: 2.74 Total: -43.21 kcal Atomic # 7 Polarization: -46.19 SS G_CDS: 0.18 Total: -46.01 kcal Atomic # 8 Polarization: -57.13 SS G_CDS: -2.60 Total: -59.73 kcal Atomic # 14 Polarization: 41.62 SS G_CDS: 2.03 Total: 43.65 kcal Total: -66.08 2.23 -63.85 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001227031521.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.198 kcal (2) G-P(sol) polarization free energy of solvation -66.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds