Wall clock time and date at job start Tue Mar 31 2020 06:34:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86797 * 120.00081 * 2 1 4 4 H 1.48496 * 109.47386 * 240.00220 * 3 2 1 5 5 H 1.48509 * 109.47000 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47037 * 119.99668 * 3 2 1 7 7 C 1.37884 * 119.99992 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99702 * 185.14037 * 7 2 1 9 9 C 1.50699 * 119.99784 * 5.13967 * 7 2 1 10 10 H 1.09004 * 109.47159 * 24.86438 * 9 7 2 11 11 O 1.42897 * 109.46928 * 144.86435 * 9 7 2 12 12 C 1.36101 * 116.99992 * 269.99857 * 11 9 7 13 13 C 1.38978 * 120.08817 * 269.72763 * 12 11 9 14 14 O 1.35994 * 120.04588 * 359.97438 * 13 12 11 15 15 C 1.38667 * 119.90930 * 179.72511 * 13 12 11 16 16 C 1.38234 * 120.08600 * 0.54373 * 15 13 12 17 17 C 1.38234 * 120.17945 * 359.73166 * 16 15 13 18 18 C 1.38660 * 120.08731 * 359.97438 * 17 16 15 19 19 O 1.36007 * 120.03974 * 180.02562 * 18 17 16 20 20 C 1.50699 * 109.47167 * 264.86356 * 9 7 2 21 21 C 1.38240 * 119.99862 * 277.78580 * 20 9 7 22 22 C 1.38234 * 120.00112 * 179.80636 * 21 20 9 23 23 C 1.38243 * 119.99730 * 0.40688 * 22 21 20 24 24 C 1.38236 * 119.99990 * 359.84404 * 23 22 21 25 25 C 1.38234 * 120.00234 * 98.06182 * 20 9 7 26 26 H 0.96995 * 119.99762 * 0.02562 * 1 2 3 27 27 H 0.96693 * 113.99911 * 89.99876 * 14 13 12 28 28 H 1.07995 * 119.95918 * 180.25197 * 15 13 12 29 29 H 1.07994 * 119.90991 * 179.74674 * 16 15 13 30 30 H 1.07999 * 119.95315 * 179.97438 * 17 16 15 31 31 H 0.96696 * 113.99966 * 269.97226 * 19 18 17 32 32 H 1.08003 * 120.00040 * 0.02562 * 21 20 9 33 33 H 1.07997 * 120.00380 * 180.22783 * 22 21 20 34 34 H 1.07996 * 119.99601 * 179.83392 * 23 22 21 35 35 H 1.08000 * 119.99995 * 179.97438 * 24 23 22 36 36 H 1.07997 * 119.99950 * 359.97438 * 25 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0813 -1.1960 0.0833 9 6 1.2556 -2.4965 -0.1180 10 1 0.3027 -2.3238 -0.6183 11 8 2.0313 -3.4251 -0.8783 12 6 1.8404 -3.4321 -2.2258 13 6 0.8819 -4.2658 -2.7895 14 8 0.1331 -5.0769 -1.9952 15 6 0.6866 -4.2658 -4.1623 16 6 1.4515 -3.4462 -4.9711 17 6 2.4098 -2.6196 -4.4149 18 6 2.6070 -2.6093 -3.0424 19 8 3.5498 -1.7953 -2.4961 20 6 1.0061 -3.0584 1.2578 21 6 1.9969 -3.7760 1.9015 22 6 1.7695 -4.2880 3.1652 23 6 0.5482 -4.0896 3.7819 24 6 -0.4444 -3.3765 3.1361 25 6 -0.2156 -2.8612 1.8739 26 1 -0.4849 0.8400 -0.0004 27 1 -0.6878 -4.6726 -1.6829 28 1 -0.0608 -4.9104 -4.6007 29 1 1.2998 -3.4514 -6.0403 30 1 3.0056 -1.9810 -5.0502 31 1 4.4238 -2.2019 -2.4194 32 1 2.9500 -3.9335 1.4185 33 1 2.5449 -4.8454 3.6697 34 1 0.3696 -4.4919 4.7681 35 1 -1.3986 -3.2219 3.6176 36 1 -0.9911 -2.3040 1.3694 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001227031522.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:44 Heat of formation + Delta-G solvation = -68.862302 kcal Electronic energy + Delta-G solvation = -22656.803986 eV Core-core repulsion = 19264.877705 eV Total energy + Delta-G solvation = -3391.926281 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 286.104 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.83061 -38.34382 -37.16684 -36.40729 -35.14167 -33.01419 -30.84473 -29.99888 -28.86785 -28.60196 -26.60779 -23.38199 -22.13018 -21.96493 -21.44199 -20.20164 -18.41245 -17.16339 -16.81461 -16.51157 -16.00471 -15.73429 -14.96627 -14.59200 -14.51664 -14.14794 -13.97406 -13.58568 -13.18366 -12.84567 -12.59985 -12.47866 -11.95398 -11.79902 -11.50629 -11.38489 -11.08568 -10.92088 -10.81496 -10.42645 -10.33684 -10.20144 -9.85371 -9.56794 -8.64854 -8.60731 -8.19020 -8.04592 -7.95118 -7.64870 -6.18901 -4.21300 1.56328 1.61688 2.29136 2.30707 3.29598 3.31889 3.38307 3.81341 4.34001 4.46527 4.63188 4.82047 5.00067 5.19106 5.26863 5.55716 5.65791 5.66681 5.75353 5.82820 6.00264 6.16107 6.34303 6.42624 6.53105 6.59282 6.65587 6.83401 6.85518 6.93191 6.98525 7.07064 7.31478 7.41698 7.68141 7.77340 7.90714 7.97985 8.06107 8.23454 8.55865 8.99518 9.43810 10.86400 Molecular weight = 286.10amu Principal moments of inertia in cm(-1) A = 0.012262 B = 0.008280 C = 0.005784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2282.955246 B = 3380.855403 C = 4839.617787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.070 3.930 3 Si 0.901 3.099 4 H -0.271 1.271 5 H -0.288 1.288 6 H -0.276 1.276 7 C -0.502 4.502 8 H 0.068 0.932 9 C 0.245 3.755 10 H 0.052 0.948 11 O -0.340 6.340 12 C 0.090 3.910 13 C 0.085 3.915 14 O -0.489 6.489 15 C -0.149 4.149 16 C -0.114 4.114 17 C -0.151 4.151 18 C 0.112 3.888 19 O -0.467 6.467 20 C -0.028 4.028 21 C -0.107 4.107 22 C -0.133 4.133 23 C -0.150 4.150 24 C -0.130 4.130 25 C -0.106 4.106 26 H 0.266 0.734 27 H 0.386 0.614 28 H 0.125 0.875 29 H 0.124 0.876 30 H 0.126 0.874 31 H 0.378 0.622 32 H 0.115 0.885 33 H 0.107 0.893 34 H 0.106 0.894 35 H 0.108 0.892 36 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.919 -6.504 -4.203 7.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.134 4.134 3 Si 0.728 3.272 4 H -0.196 1.196 5 H -0.214 1.214 6 H -0.202 1.202 7 C -0.539 4.539 8 H 0.087 0.913 9 C 0.192 3.808 10 H 0.070 0.930 11 O -0.258 6.258 12 C 0.044 3.956 13 C 0.039 3.961 14 O -0.298 6.298 15 C -0.168 4.168 16 C -0.132 4.132 17 C -0.170 4.170 18 C 0.066 3.934 19 O -0.274 6.274 20 C -0.028 4.028 21 C -0.126 4.126 22 C -0.151 4.151 23 C -0.168 4.168 24 C -0.148 4.148 25 C -0.124 4.124 26 H 0.075 0.925 27 H 0.241 0.759 28 H 0.143 0.857 29 H 0.142 0.858 30 H 0.144 0.856 31 H 0.232 0.768 32 H 0.133 0.867 33 H 0.125 0.875 34 H 0.124 0.876 35 H 0.126 0.874 36 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 0.866 -6.467 -4.135 7.724 hybrid contribution 0.249 1.244 0.134 1.276 sum 1.115 -5.222 -4.000 6.672 Atomic orbital electron populations 1.69876 1.06087 1.27487 1.49032 1.24957 0.94897 0.99565 0.93961 0.86495 0.79655 0.82054 0.78982 1.19618 1.21382 1.20150 1.21286 0.94122 0.89070 1.49423 0.91348 1.19077 0.92049 0.85166 0.84479 0.93027 1.85944 1.66221 1.61474 1.12167 1.19423 0.96308 0.93756 0.86137 1.18762 0.93994 0.93927 0.89380 1.84815 1.37061 1.40126 1.67834 1.21230 1.01808 1.01163 0.92603 1.20701 0.96470 0.96739 0.99340 1.21354 1.00923 1.00725 0.93949 1.18742 0.93945 0.90675 0.89998 1.85048 1.20580 1.38373 1.83445 1.20234 0.92256 0.92570 0.97783 1.20908 0.99356 0.97996 0.94299 1.20967 0.96905 1.01448 0.95776 1.20840 0.94448 1.02001 0.99492 1.20959 0.98629 0.99570 0.95633 1.20996 0.97295 0.98943 0.95168 0.92466 0.75871 0.85692 0.85796 0.85607 0.76788 0.86682 0.87483 0.87619 0.87355 0.85783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.33 12.84 55.43 0.71 -23.62 16 2 C 0.07 1.88 5.45 -17.82 -0.10 1.78 16 3 Si 0.90 21.47 29.54 -169.99 -5.02 16.45 16 4 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.50 -13.43 7.52 -34.44 -0.26 -13.69 16 8 H 0.07 1.87 7.76 -52.49 -0.41 1.47 16 9 C 0.25 6.06 2.46 -29.04 -0.07 5.99 16 10 H 0.05 1.38 7.02 -51.93 -0.36 1.02 16 11 O -0.34 -7.93 8.50 -45.31 -0.39 -8.32 16 12 C 0.09 1.89 5.58 -39.03 -0.22 1.68 16 13 C 0.08 1.58 6.71 -39.15 -0.26 1.32 16 14 O -0.49 -8.80 13.29 -34.30 -0.46 -9.25 16 15 C -0.15 -2.33 9.98 -39.42 -0.39 -2.72 16 16 C -0.11 -1.65 10.04 -39.58 -0.40 -2.05 16 17 C -0.15 -2.43 9.98 -39.43 -0.39 -2.82 16 18 C 0.11 2.18 6.71 -39.15 -0.26 1.92 16 19 O -0.47 -9.12 12.10 -34.34 -0.42 -9.54 16 20 C -0.03 -0.65 4.97 -104.62 -0.52 -1.17 16 21 C -0.11 -2.30 9.36 -39.58 -0.37 -2.67 16 22 C -0.13 -2.48 10.05 -39.58 -0.40 -2.87 16 23 C -0.15 -2.66 10.05 -39.58 -0.40 -3.06 16 24 C -0.13 -2.45 10.05 -39.58 -0.40 -2.85 16 25 C -0.11 -2.31 9.67 -39.58 -0.38 -2.69 16 26 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 27 H 0.39 5.70 9.06 45.56 0.41 6.11 16 28 H 0.13 1.62 8.06 -52.49 -0.42 1.19 16 29 H 0.12 1.37 8.06 -52.49 -0.42 0.95 16 30 H 0.13 1.73 8.06 -52.49 -0.42 1.30 16 31 H 0.38 5.44 9.06 45.56 0.41 5.85 16 32 H 0.12 2.45 7.71 -52.48 -0.40 2.04 16 33 H 0.11 1.68 8.06 -52.49 -0.42 1.26 16 34 H 0.11 1.55 8.06 -52.49 -0.42 1.13 16 35 H 0.11 1.75 8.06 -52.49 -0.42 1.32 16 36 H 0.12 2.81 8.05 -52.49 -0.42 2.38 16 LS Contribution 321.48 15.07 4.84 4.84 Total: -1.00 -31.25 321.48 -7.99 -39.24 By element: Atomic # 1 Polarization: 16.56 SS G_CDS: -2.45 Total: 14.11 kcal Atomic # 6 Polarization: -19.10 SS G_CDS: -4.82 Total: -23.92 kcal Atomic # 7 Polarization: -24.33 SS G_CDS: 0.71 Total: -23.62 kcal Atomic # 8 Polarization: -25.85 SS G_CDS: -1.26 Total: -27.11 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -31.25 -7.99 -39.24 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001227031522.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.623 kcal (2) G-P(sol) polarization free energy of solvation -31.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds