Wall clock time and date at job start Tue Mar 31 2020 06:34:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86797 * 120.00081 * 2 1 4 4 H 1.48496 * 109.47386 * 240.00220 * 3 2 1 5 5 H 1.48509 * 109.47000 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47037 * 119.99668 * 3 2 1 7 7 C 1.37884 * 119.99992 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99702 * 185.14037 * 7 2 1 9 9 C 1.50699 * 119.99784 * 5.13967 * 7 2 1 10 10 H 1.09004 * 109.47159 * 24.86438 * 9 7 2 11 11 O 1.42897 * 109.46928 * 144.86435 * 9 7 2 12 12 C 1.36101 * 116.99992 * 269.99857 * 11 9 7 13 13 C 1.38978 * 120.08817 * 269.72763 * 12 11 9 14 14 O 1.35994 * 120.04588 * 359.97438 * 13 12 11 15 15 C 1.38667 * 119.90930 * 179.72511 * 13 12 11 16 16 C 1.38234 * 120.08600 * 0.54373 * 15 13 12 17 17 C 1.38234 * 120.17945 * 359.73166 * 16 15 13 18 18 C 1.38660 * 120.08731 * 359.97438 * 17 16 15 19 19 O 1.36007 * 120.03974 * 180.02562 * 18 17 16 20 20 C 1.50699 * 109.47167 * 264.86356 * 9 7 2 21 21 C 1.38240 * 119.99862 * 277.78580 * 20 9 7 22 22 C 1.38234 * 120.00112 * 179.80636 * 21 20 9 23 23 C 1.38243 * 119.99730 * 0.40688 * 22 21 20 24 24 C 1.38236 * 119.99990 * 359.84404 * 23 22 21 25 25 C 1.38234 * 120.00234 * 98.06182 * 20 9 7 26 26 H 0.96995 * 119.99762 * 0.02562 * 1 2 3 27 27 H 0.96693 * 113.99911 * 89.99876 * 14 13 12 28 28 H 1.07995 * 119.95918 * 180.25197 * 15 13 12 29 29 H 1.07994 * 119.90991 * 179.74674 * 16 15 13 30 30 H 1.07999 * 119.95315 * 179.97438 * 17 16 15 31 31 H 0.96696 * 113.99966 * 269.97226 * 19 18 17 32 32 H 1.08003 * 120.00040 * 0.02562 * 21 20 9 33 33 H 1.07997 * 120.00380 * 180.22783 * 22 21 20 34 34 H 1.07996 * 119.99601 * 179.83392 * 23 22 21 35 35 H 1.08000 * 119.99995 * 179.97438 * 24 23 22 36 36 H 1.07997 * 119.99950 * 359.97438 * 25 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0813 -1.1960 0.0833 9 6 1.2556 -2.4965 -0.1180 10 1 0.3027 -2.3238 -0.6183 11 8 2.0313 -3.4251 -0.8783 12 6 1.8404 -3.4321 -2.2258 13 6 0.8819 -4.2658 -2.7895 14 8 0.1331 -5.0769 -1.9952 15 6 0.6866 -4.2658 -4.1623 16 6 1.4515 -3.4462 -4.9711 17 6 2.4098 -2.6196 -4.4149 18 6 2.6070 -2.6093 -3.0424 19 8 3.5498 -1.7953 -2.4961 20 6 1.0061 -3.0584 1.2578 21 6 1.9969 -3.7760 1.9015 22 6 1.7695 -4.2880 3.1652 23 6 0.5482 -4.0896 3.7819 24 6 -0.4444 -3.3765 3.1361 25 6 -0.2156 -2.8612 1.8739 26 1 -0.4849 0.8400 -0.0004 27 1 -0.6878 -4.6726 -1.6829 28 1 -0.0608 -4.9104 -4.6007 29 1 1.2998 -3.4514 -6.0403 30 1 3.0056 -1.9810 -5.0502 31 1 4.4238 -2.2019 -2.4194 32 1 2.9500 -3.9335 1.4185 33 1 2.5449 -4.8454 3.6697 34 1 0.3696 -4.4919 4.7681 35 1 -1.3986 -3.2219 3.6176 36 1 -0.9911 -2.3040 1.3694 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001227031522.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:44 Heat of formation + Delta-G solvation = -89.606431 kcal Electronic energy + Delta-G solvation = -22657.703519 eV Core-core repulsion = 19264.877705 eV Total energy + Delta-G solvation = -3392.825814 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 286.104 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.28324 -39.91917 -38.59772 -38.01741 -36.52556 -34.95391 -32.53679 -31.56633 -30.20129 -30.04340 -28.47974 -25.19386 -23.52300 -23.45139 -22.93450 -21.84854 -19.83606 -18.92049 -18.35898 -18.15207 -17.61676 -17.18072 -16.63425 -16.15791 -16.07353 -15.63654 -15.43359 -15.15000 -14.88606 -14.49689 -14.06342 -13.89091 -13.66078 -13.27056 -13.12004 -13.00684 -12.78654 -12.56215 -12.50364 -12.14176 -11.94023 -11.71602 -11.49718 -11.36021 -10.64345 -10.32269 -9.61818 -9.54114 -9.45718 -9.24600 -8.20272 -6.29200 0.21074 0.24677 0.70599 0.74454 1.35796 1.38981 1.46376 2.35793 2.48632 3.01526 3.14349 3.19403 3.26401 3.63928 4.11544 4.22468 4.27570 4.29545 4.37979 4.48515 4.51169 4.73080 4.82199 4.87848 4.97378 5.07470 5.31051 5.35546 5.36733 5.39443 5.48699 5.66224 5.75477 5.76113 5.82524 6.03022 6.11320 6.35162 6.48023 6.73314 6.93653 7.16055 7.40841 8.83304 Molecular weight = 286.10amu Principal moments of inertia in cm(-1) A = 0.012262 B = 0.008280 C = 0.005784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2282.955246 B = 3380.855403 C = 4839.617787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.026 3.974 3 Si 0.952 3.048 4 H -0.272 1.272 5 H -0.281 1.281 6 H -0.273 1.273 7 C -0.510 4.510 8 H 0.052 0.948 9 C 0.260 3.740 10 H 0.018 0.982 11 O -0.352 6.352 12 C 0.037 3.963 13 C 0.070 3.930 14 O -0.499 6.499 15 C -0.145 4.145 16 C -0.094 4.094 17 C -0.151 4.151 18 C 0.092 3.908 19 O -0.490 6.490 20 C -0.058 4.058 21 C -0.126 4.126 22 C -0.127 4.127 23 C -0.138 4.138 24 C -0.127 4.127 25 C -0.126 4.126 26 H 0.265 0.735 27 H 0.395 0.605 28 H 0.157 0.843 29 H 0.172 0.828 30 H 0.153 0.847 31 H 0.394 0.606 32 H 0.104 0.896 33 H 0.142 0.858 34 H 0.151 0.849 35 H 0.139 0.861 36 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.836 -7.343 -4.416 8.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.174 4.174 3 Si 0.777 3.223 4 H -0.198 1.198 5 H -0.206 1.206 6 H -0.199 1.199 7 C -0.547 4.547 8 H 0.070 0.930 9 C 0.206 3.794 10 H 0.036 0.964 11 O -0.270 6.270 12 C -0.008 4.008 13 C 0.025 3.975 14 O -0.310 6.310 15 C -0.163 4.163 16 C -0.112 4.112 17 C -0.169 4.169 18 C 0.047 3.953 19 O -0.301 6.301 20 C -0.059 4.059 21 C -0.145 4.145 22 C -0.145 4.145 23 C -0.156 4.156 24 C -0.145 4.145 25 C -0.145 4.145 26 H 0.074 0.926 27 H 0.252 0.748 28 H 0.175 0.825 29 H 0.190 0.810 30 H 0.170 0.830 31 H 0.251 0.749 32 H 0.123 0.877 33 H 0.160 0.840 34 H 0.168 0.832 35 H 0.157 0.843 36 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 0.793 -7.321 -4.354 8.555 hybrid contribution 0.280 1.369 0.132 1.404 sum 1.073 -5.951 -4.222 7.375 Atomic orbital electron populations 1.69982 1.06901 1.27759 1.50356 1.25586 0.95653 1.02079 0.94097 0.85705 0.78649 0.79146 0.78765 1.19764 1.20632 1.19859 1.21368 0.93357 0.90562 1.49422 0.93014 1.18720 0.90159 0.85189 0.85328 0.96440 1.85896 1.66207 1.61048 1.13829 1.19951 0.99016 0.96529 0.85329 1.19058 0.93818 0.93786 0.90845 1.84762 1.37656 1.40364 1.68246 1.21608 1.02288 1.01363 0.91089 1.21264 0.94114 0.94344 1.01494 1.21686 1.01487 1.01144 0.92604 1.19078 0.94098 0.90747 0.91426 1.84966 1.21806 1.39334 1.83944 1.20254 0.93693 0.94526 0.97385 1.20955 0.98654 0.98973 0.95893 1.21357 0.98323 1.00401 0.94422 1.21332 0.93212 1.00217 1.00848 1.21314 1.00391 0.98482 0.94269 1.20976 0.96557 1.00124 0.96807 0.92619 0.74798 0.82498 0.81047 0.82972 0.74905 0.87740 0.84001 0.83177 0.84311 0.87850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.09 12.84 21.45 0.28 -51.81 16 2 C 0.03 1.46 5.45 84.66 0.46 1.92 16 3 Si 0.95 45.17 29.54 68.60 2.03 47.20 16 4 H -0.27 -12.85 7.11 99.48 0.71 -12.14 16 5 H -0.28 -12.88 7.11 99.48 0.71 -12.18 16 6 H -0.27 -12.72 7.11 99.48 0.71 -12.01 16 7 C -0.51 -28.71 7.52 25.60 0.19 -28.52 16 8 H 0.05 3.00 7.76 -2.91 -0.02 2.98 16 9 C 0.26 13.66 2.46 29.10 0.07 13.74 16 10 H 0.02 1.02 7.02 -2.38 -0.02 1.00 16 11 O -0.35 -17.48 8.50 -70.55 -0.60 -18.08 16 12 C 0.04 1.63 5.58 22.62 0.13 1.76 16 13 C 0.07 2.66 6.71 22.55 0.15 2.82 16 14 O -0.50 -18.55 13.29 -79.54 -1.06 -19.60 16 15 C -0.15 -4.23 9.98 22.37 0.22 -4.01 16 16 C -0.09 -2.42 10.04 22.27 0.22 -2.20 16 17 C -0.15 -4.61 9.98 22.37 0.22 -4.38 16 18 C 0.09 3.65 6.71 22.55 0.15 3.80 16 19 O -0.49 -19.93 12.10 -79.69 -0.96 -20.89 16 20 C -0.06 -2.82 4.97 -19.87 -0.10 -2.92 16 21 C -0.13 -5.54 9.36 22.27 0.21 -5.33 16 22 C -0.13 -4.49 10.05 22.27 0.22 -4.26 16 23 C -0.14 -4.47 10.05 22.27 0.22 -4.25 16 24 C -0.13 -4.59 10.05 22.27 0.22 -4.37 16 25 C -0.13 -5.69 9.67 22.27 0.22 -5.48 16 26 H 0.26 14.46 8.31 -92.71 -0.77 13.69 16 27 H 0.40 12.42 9.06 -74.06 -0.67 11.75 16 28 H 0.16 3.53 8.06 -2.91 -0.02 3.50 16 29 H 0.17 2.82 8.06 -2.91 -0.02 2.80 16 30 H 0.15 3.77 8.06 -2.91 -0.02 3.75 16 31 H 0.39 12.01 9.06 -74.06 -0.67 11.33 16 32 H 0.10 4.66 7.71 -2.91 -0.02 4.64 16 33 H 0.14 3.97 8.06 -2.91 -0.02 3.94 16 34 H 0.15 3.58 8.06 -2.91 -0.02 3.56 16 35 H 0.14 4.11 8.06 -2.91 -0.02 4.08 16 36 H 0.10 4.98 8.05 -2.91 -0.02 4.96 16 Total: -1.00 -71.51 321.48 2.28 -69.22 By element: Atomic # 1 Polarization: 35.86 SS G_CDS: -0.22 Total: 35.65 kcal Atomic # 6 Polarization: -44.49 SS G_CDS: 2.82 Total: -41.67 kcal Atomic # 7 Polarization: -52.09 SS G_CDS: 0.28 Total: -51.81 kcal Atomic # 8 Polarization: -55.95 SS G_CDS: -2.62 Total: -58.57 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 2.03 Total: 47.20 kcal Total: -71.51 2.28 -69.22 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001227031522.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.385 kcal (2) G-P(sol) polarization free energy of solvation -71.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds