Wall clock time and date at job start Tue Mar 31 2020 05:34:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.35976 * 117.00101 * 2 1 4 4 C 1.38694 * 119.98353 * 359.97438 * 3 2 1 5 5 C 1.38229 * 120.09251 * 180.02562 * 4 3 2 6 6 C 1.38535 * 120.05309 * 0.02562 * 5 4 3 7 7 O 1.36072 * 120.02025 * 179.97438 * 6 5 4 8 8 C 1.42902 * 116.99730 * 0.02562 * 7 6 5 9 9 C 1.39131 * 119.95945 * 0.27808 * 6 5 4 10 10 O 1.35992 * 120.04231 * 179.72667 * 9 6 5 11 11 C 1.42906 * 117.00062 * 175.75521 * 10 9 6 12 12 H 1.08998 * 109.46646 * 27.77025 * 11 10 9 13 13 C 1.50696 * 109.47061 * 147.77327 * 11 10 9 14 14 H 1.07998 * 120.00362 * 5.04267 * 13 11 10 15 15 C 1.37882 * 120.00084 * 185.04786 * 13 11 10 16 16 N 1.31520 * 119.99595 * 5.61362 * 15 13 11 17 17 Si 1.86793 * 120.00003 * 185.61527 * 15 13 11 18 18 H 1.48501 * 109.47193 * 94.99670 * 17 15 13 19 19 H 1.48501 * 109.46878 * 214.99432 * 17 15 13 20 20 H 1.48498 * 109.47378 * 334.99088 * 17 15 13 21 21 C 1.53000 * 109.47069 * 267.77402 * 11 10 9 22 22 Cl 1.80300 * 109.47248 * 65.49019 * 21 11 10 23 23 C 1.38546 * 119.91479 * 359.43906 * 9 6 5 24 24 H 1.09003 * 109.47362 * 60.00312 * 1 2 3 25 25 H 1.09002 * 109.47625 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47815 * 300.00097 * 1 2 3 27 27 H 1.08003 * 119.95403 * 0.02562 * 4 3 2 28 28 H 1.07998 * 119.97455 * 179.97438 * 5 4 3 29 29 H 1.08996 * 109.47014 * 299.99394 * 8 7 6 30 30 H 1.08994 * 109.47319 * 60.00017 * 8 7 6 31 31 H 1.09004 * 109.46657 * 180.02562 * 8 7 6 32 32 H 0.96995 * 119.99485 * 179.97438 * 16 15 13 33 33 H 1.08999 * 109.47223 * 185.49769 * 21 11 10 34 34 H 1.09004 * 109.46794 * 305.48984 * 21 11 10 35 35 H 1.07994 * 120.02838 * 180.25005 * 23 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0463 1.2115 0.0000 4 6 1.2906 2.3745 -0.0005 5 6 1.9158 3.6073 -0.0011 6 6 3.2990 3.6837 -0.0016 7 8 3.9138 4.8977 -0.0027 8 6 3.0709 6.0516 -0.0026 9 6 4.0592 2.5185 -0.0075 10 8 5.4172 2.5915 -0.0136 11 6 6.1337 1.3582 0.0748 12 1 5.5287 0.5556 -0.3469 13 6 7.4249 1.4712 -0.6938 14 1 7.7125 2.4161 -1.1306 15 6 8.2393 0.3682 -0.8394 16 7 7.8392 -0.8067 -0.4043 17 14 9.9109 0.5425 -1.6547 18 1 10.9522 0.7324 -0.6131 19 1 10.2106 -0.6840 -2.4364 20 1 9.8987 1.7175 -2.5626 21 6 6.4388 1.0498 1.5420 22 17 4.8961 0.7554 2.4277 23 6 3.4311 1.2836 -0.0010 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3635 0.5138 0.8899 27 1 0.2121 2.3168 -0.0005 28 1 1.3255 4.5117 -0.0019 29 1 2.4411 6.0416 -0.8921 30 1 2.4424 6.0425 0.8878 31 1 3.6866 6.9512 -0.0040 32 1 8.4119 -1.5827 -0.5071 33 1 7.0682 0.1620 1.6034 34 1 6.9594 1.8959 1.9905 35 1 4.0194 0.3780 -0.0014 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001227076224.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:47 Heat of formation + Delta-G solvation = -93.372830 kcal Electronic energy + Delta-G solvation = -20934.799807 eV Core-core repulsion = 17539.377820 eV Total energy + Delta-G solvation = -3395.421986 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 286.080 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.18228 -38.60426 -37.88951 -35.42191 -34.75311 -33.32098 -30.17396 -29.85796 -28.49430 -27.04773 -26.55241 -25.24674 -22.86787 -21.47508 -20.43716 -18.44012 -17.25274 -16.91321 -16.13119 -15.89994 -15.59353 -15.22501 -14.65442 -14.41062 -14.28251 -14.08677 -13.80054 -12.96977 -12.58519 -12.48302 -12.25148 -12.06759 -11.93733 -11.47676 -11.37335 -11.19168 -11.07603 -10.96182 -10.64458 -10.59006 -10.16111 -10.05142 -9.62067 -9.36322 -9.19958 -8.62391 -7.77470 -7.00835 -6.38108 -4.44292 1.78976 1.97987 3.16415 3.24892 3.29333 3.41512 3.54330 3.77994 4.07308 4.21784 4.42208 4.97767 5.03693 5.20571 5.27154 5.31282 5.35774 5.37388 5.56083 5.62273 5.73090 5.87436 6.11577 6.15890 6.27512 6.30495 6.56603 6.70605 6.81173 6.99939 7.18691 7.58172 7.67670 7.78088 7.85108 8.40118 8.75207 9.22623 10.70099 Molecular weight = 286.08amu Principal moments of inertia in cm(-1) A = 0.015824 B = 0.006099 C = 0.005202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1769.076951 B = 4589.891395 C = 5381.468751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.315 6.315 3 C 0.129 3.871 4 C -0.227 4.227 5 C -0.142 4.142 6 C 0.048 3.952 7 O -0.304 6.304 8 C 0.030 3.970 9 C 0.171 3.829 10 O -0.294 6.294 11 C 0.201 3.799 12 H 0.058 0.942 13 C -0.521 4.521 14 H 0.077 0.923 15 C 0.065 3.935 16 N -0.885 5.885 17 Si 0.913 3.087 18 H -0.276 1.276 19 H -0.283 1.283 20 H -0.269 1.269 21 C -0.031 4.031 22 Cl -0.235 7.235 23 C -0.192 4.192 24 H 0.051 0.949 25 H 0.094 0.906 26 H 0.050 0.950 27 H 0.122 0.878 28 H 0.128 0.872 29 H 0.047 0.953 30 H 0.047 0.953 31 H 0.093 0.907 32 H 0.271 0.729 33 H 0.118 0.882 34 H 0.077 0.923 35 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.828 5.681 1.444 13.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.229 6.229 3 C 0.084 3.916 4 C -0.246 4.246 5 C -0.161 4.161 6 C 0.003 3.997 7 O -0.218 6.218 8 C -0.066 4.066 9 C 0.123 3.877 10 O -0.207 6.207 11 C 0.146 3.854 12 H 0.075 0.925 13 C -0.559 4.559 14 H 0.095 0.905 15 C -0.139 4.139 16 N -0.522 5.522 17 Si 0.740 3.260 18 H -0.202 1.202 19 H -0.208 1.208 20 H -0.193 1.193 21 C -0.093 4.093 22 Cl -0.210 7.210 23 C -0.211 4.211 24 H 0.069 0.931 25 H 0.112 0.888 26 H 0.069 0.931 27 H 0.140 0.860 28 H 0.145 0.855 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.112 0.888 32 H 0.081 0.919 33 H 0.137 0.863 34 H 0.095 0.905 35 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -11.440 5.472 1.511 12.771 hybrid contribution 0.198 -0.036 -0.206 0.288 sum -11.242 5.436 1.304 12.555 Atomic orbital electron populations 1.22946 0.79371 1.03261 1.00870 1.86099 1.20484 1.27152 1.89161 1.18547 0.91530 0.83766 0.97766 1.20671 0.99178 0.91628 1.13130 1.20596 0.92070 0.98035 1.05425 1.18140 0.90122 0.84082 1.07338 1.86219 1.34216 1.11521 1.89881 1.22928 0.95754 0.87436 1.00446 1.18015 0.84817 0.89958 0.94898 1.86266 1.12315 1.36239 1.85871 1.20578 0.92429 0.81574 0.90837 0.92452 1.20980 1.03185 0.97672 1.34042 0.90499 1.24994 0.99215 0.94489 0.95219 1.69926 1.37227 0.99252 1.45761 0.86211 0.82369 0.78056 0.79385 1.20220 1.20816 1.19331 1.25646 0.84824 1.04541 0.94337 1.98652 1.43887 1.97400 1.81021 1.20514 0.92206 0.98247 1.10145 0.93077 0.88776 0.93111 0.86012 0.85470 0.93399 0.93408 0.88836 0.91924 0.86345 0.90453 0.82904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 9.81 101.05 0.99 1.35 16 2 O -0.32 -5.39 10.50 -19.66 -0.21 -5.60 16 3 C 0.13 2.37 6.68 -39.25 -0.26 2.11 16 4 C -0.23 -3.59 9.03 -39.42 -0.36 -3.95 16 5 C -0.14 -2.27 9.03 -39.48 -0.36 -2.63 16 6 C 0.05 0.93 6.70 -39.14 -0.26 0.66 16 7 O -0.30 -5.63 10.28 -34.56 -0.36 -5.99 16 8 C 0.03 0.37 9.81 101.05 0.99 1.36 16 9 C 0.17 3.76 5.97 -39.14 -0.23 3.53 16 10 O -0.29 -7.22 9.52 -34.31 -0.33 -7.55 16 11 C 0.20 5.04 2.07 -27.89 -0.06 4.98 16 12 H 0.06 1.53 5.40 -51.93 -0.28 1.25 16 13 C -0.52 -13.91 8.82 -34.44 -0.30 -14.21 16 14 H 0.08 2.08 7.82 -52.49 -0.41 1.67 16 15 C 0.06 1.68 5.22 -17.82 -0.09 1.59 16 16 N -0.89 -23.58 11.95 55.43 0.66 -22.92 16 17 Si 0.91 20.23 29.54 -169.99 -5.02 15.21 16 18 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 19 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 20 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 21 C -0.03 -0.71 6.22 37.16 0.23 -0.48 16 22 Cl -0.24 -5.05 25.53 -51.86 -1.32 -6.37 16 23 C -0.19 -4.06 6.93 -39.31 -0.27 -4.33 16 24 H 0.05 0.51 7.66 -51.93 -0.40 0.12 16 25 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 26 H 0.05 0.52 7.66 -51.93 -0.40 0.12 16 27 H 0.12 1.53 6.28 -52.48 -0.33 1.20 16 28 H 0.13 1.59 6.29 -52.49 -0.33 1.26 16 29 H 0.05 0.51 7.66 -51.93 -0.40 0.12 16 30 H 0.05 0.51 7.66 -51.93 -0.40 0.12 16 31 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 32 H 0.27 6.83 8.31 -40.82 -0.34 6.49 16 33 H 0.12 2.90 6.60 -51.93 -0.34 2.56 16 34 H 0.08 1.74 8.14 -51.93 -0.42 1.32 16 35 H 0.15 3.51 5.09 -52.49 -0.27 3.24 16 LS Contribution 305.79 15.07 4.61 4.61 Total: -1.00 -29.28 305.79 -5.90 -35.18 By element: Atomic # 1 Polarization: 7.41 SS G_CDS: -3.95 Total: 3.46 kcal Atomic # 6 Polarization: -10.04 SS G_CDS: 0.02 Total: -10.03 kcal Atomic # 7 Polarization: -23.58 SS G_CDS: 0.66 Total: -22.92 kcal Atomic # 8 Polarization: -18.24 SS G_CDS: -0.89 Total: -19.13 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -5.02 Total: 15.21 kcal Atomic # 17 Polarization: -5.05 SS G_CDS: -1.32 Total: -6.37 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -29.28 -5.90 -35.18 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001227076224.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.196 kcal (2) G-P(sol) polarization free energy of solvation -29.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds