Wall clock time and date at job start Tue Mar 31 2020 05:34:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.35976 * 117.00101 * 2 1 4 4 C 1.38694 * 119.98353 * 359.97438 * 3 2 1 5 5 C 1.38229 * 120.09251 * 180.02562 * 4 3 2 6 6 C 1.38535 * 120.05309 * 0.02562 * 5 4 3 7 7 O 1.36072 * 120.02025 * 179.97438 * 6 5 4 8 8 C 1.42902 * 116.99730 * 0.02562 * 7 6 5 9 9 C 1.39131 * 119.95945 * 0.27808 * 6 5 4 10 10 O 1.35992 * 120.04231 * 179.72667 * 9 6 5 11 11 C 1.42906 * 117.00062 * 175.75521 * 10 9 6 12 12 H 1.08998 * 109.46646 * 27.77025 * 11 10 9 13 13 C 1.50696 * 109.47061 * 147.77327 * 11 10 9 14 14 H 1.07998 * 120.00362 * 5.04267 * 13 11 10 15 15 C 1.37882 * 120.00084 * 185.04786 * 13 11 10 16 16 N 1.31520 * 119.99595 * 5.61362 * 15 13 11 17 17 Si 1.86793 * 120.00003 * 185.61527 * 15 13 11 18 18 H 1.48501 * 109.47193 * 94.99670 * 17 15 13 19 19 H 1.48501 * 109.46878 * 214.99432 * 17 15 13 20 20 H 1.48498 * 109.47378 * 334.99088 * 17 15 13 21 21 C 1.53000 * 109.47069 * 267.77402 * 11 10 9 22 22 Cl 1.80300 * 109.47248 * 65.49019 * 21 11 10 23 23 C 1.38546 * 119.91479 * 359.43906 * 9 6 5 24 24 H 1.09003 * 109.47362 * 60.00312 * 1 2 3 25 25 H 1.09002 * 109.47625 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47815 * 300.00097 * 1 2 3 27 27 H 1.08003 * 119.95403 * 0.02562 * 4 3 2 28 28 H 1.07998 * 119.97455 * 179.97438 * 5 4 3 29 29 H 1.08996 * 109.47014 * 299.99394 * 8 7 6 30 30 H 1.08994 * 109.47319 * 60.00017 * 8 7 6 31 31 H 1.09004 * 109.46657 * 180.02562 * 8 7 6 32 32 H 0.96995 * 119.99485 * 179.97438 * 16 15 13 33 33 H 1.08999 * 109.47223 * 185.49769 * 21 11 10 34 34 H 1.09004 * 109.46794 * 305.48984 * 21 11 10 35 35 H 1.07994 * 120.02838 * 180.25005 * 23 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0463 1.2115 0.0000 4 6 1.2906 2.3745 -0.0005 5 6 1.9158 3.6073 -0.0011 6 6 3.2990 3.6837 -0.0016 7 8 3.9138 4.8977 -0.0027 8 6 3.0709 6.0516 -0.0026 9 6 4.0592 2.5185 -0.0075 10 8 5.4172 2.5915 -0.0136 11 6 6.1337 1.3582 0.0748 12 1 5.5287 0.5556 -0.3469 13 6 7.4249 1.4712 -0.6938 14 1 7.7125 2.4161 -1.1306 15 6 8.2393 0.3682 -0.8394 16 7 7.8392 -0.8067 -0.4043 17 14 9.9109 0.5425 -1.6547 18 1 10.9522 0.7324 -0.6131 19 1 10.2106 -0.6840 -2.4364 20 1 9.8987 1.7175 -2.5626 21 6 6.4388 1.0498 1.5420 22 17 4.8961 0.7554 2.4277 23 6 3.4311 1.2836 -0.0010 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3635 0.5138 0.8899 27 1 0.2121 2.3168 -0.0005 28 1 1.3255 4.5117 -0.0019 29 1 2.4411 6.0416 -0.8921 30 1 2.4424 6.0425 0.8878 31 1 3.6866 6.9512 -0.0040 32 1 8.4119 -1.5827 -0.5071 33 1 7.0682 0.1620 1.6034 34 1 6.9594 1.8959 1.9905 35 1 4.0194 0.3780 -0.0014 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001227076224.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:47 Heat of formation + Delta-G solvation = -111.440765 kcal Electronic energy + Delta-G solvation = -20935.583291 eV Core-core repulsion = 17539.377820 eV Total energy + Delta-G solvation = -3396.205471 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 286.080 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.58933 -39.91174 -39.43777 -36.88105 -36.48159 -35.26321 -31.82153 -31.35364 -29.93766 -28.08968 -27.64950 -27.24432 -24.48507 -22.83508 -22.09644 -19.91428 -18.77651 -18.45518 -17.66199 -17.49164 -16.86345 -16.43991 -16.35446 -15.86553 -15.63051 -15.53666 -15.42125 -14.53923 -14.27624 -13.97100 -13.57928 -13.45437 -13.26076 -12.98639 -12.94158 -12.82630 -12.55294 -12.41238 -12.23744 -12.00858 -11.76236 -11.49356 -11.27719 -11.16637 -10.96833 -10.58099 -9.29352 -8.44698 -8.35577 -6.52235 0.38427 0.56699 1.39191 1.42748 1.54089 1.58025 2.26672 2.37943 2.59303 2.72061 2.81799 2.96934 3.84003 4.05875 4.24294 4.26430 4.35761 4.38479 4.46067 4.46995 4.50019 4.53816 4.63266 4.76123 4.79156 4.85983 4.92943 5.15276 5.26590 5.40629 5.54447 5.64228 5.84175 6.33902 6.49650 6.61095 6.91255 7.20253 8.71106 Molecular weight = 286.08amu Principal moments of inertia in cm(-1) A = 0.015824 B = 0.006099 C = 0.005202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1769.076951 B = 4589.891395 C = 5381.468751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.341 6.341 3 C 0.120 3.880 4 C -0.208 4.208 5 C -0.128 4.128 6 C 0.038 3.962 7 O -0.338 6.338 8 C 0.019 3.981 9 C 0.130 3.870 10 O -0.317 6.317 11 C 0.208 3.792 12 H 0.033 0.967 13 C -0.549 4.549 14 H 0.064 0.936 15 C 0.027 3.973 16 N -0.909 5.909 17 Si 0.977 3.023 18 H -0.266 1.266 19 H -0.275 1.275 20 H -0.269 1.269 21 C -0.020 4.020 22 Cl -0.218 7.218 23 C -0.210 4.210 24 H 0.069 0.931 25 H 0.115 0.885 26 H 0.067 0.933 27 H 0.165 0.835 28 H 0.172 0.828 29 H 0.067 0.933 30 H 0.066 0.934 31 H 0.111 0.889 32 H 0.275 0.725 33 H 0.103 0.897 34 H 0.080 0.920 35 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.940 6.930 1.405 15.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.256 6.256 3 C 0.075 3.925 4 C -0.227 4.227 5 C -0.147 4.147 6 C -0.007 4.007 7 O -0.253 6.253 8 C -0.076 4.076 9 C 0.083 3.917 10 O -0.231 6.231 11 C 0.153 3.847 12 H 0.050 0.950 13 C -0.586 4.586 14 H 0.083 0.917 15 C -0.175 4.175 16 N -0.546 5.546 17 Si 0.801 3.199 18 H -0.191 1.191 19 H -0.201 1.201 20 H -0.193 1.193 21 C -0.083 4.083 22 Cl -0.192 7.192 23 C -0.229 4.229 24 H 0.088 0.912 25 H 0.133 0.867 26 H 0.085 0.915 27 H 0.183 0.817 28 H 0.189 0.811 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.130 0.870 32 H 0.085 0.915 33 H 0.122 0.878 34 H 0.098 0.902 35 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -13.589 6.727 1.482 15.235 hybrid contribution 0.607 -0.392 -0.181 0.745 sum -12.982 6.335 1.301 14.504 Atomic orbital electron populations 1.23351 0.76314 1.05406 1.02476 1.86071 1.23676 1.26832 1.89003 1.18638 0.90804 0.85353 0.97702 1.21145 1.01115 0.90350 1.10073 1.21086 0.90806 0.99846 1.02915 1.18358 0.91190 0.83815 1.07351 1.86171 1.36675 1.12505 1.89926 1.23314 0.96246 0.85784 1.02217 1.18393 0.83753 0.91643 0.97897 1.86180 1.14280 1.35497 1.87171 1.20284 0.91599 0.81485 0.91336 0.94963 1.21191 1.04490 0.97614 1.35309 0.91734 1.25773 1.02397 0.93880 0.95438 1.70015 1.38450 0.99835 1.46255 0.85238 0.78052 0.78041 0.78598 1.19108 1.20056 1.19333 1.25286 0.85309 1.03748 0.93952 1.98641 1.42765 1.97339 1.80420 1.20328 0.93652 0.96914 1.12042 0.91238 0.86688 0.91465 0.81715 0.81102 0.91463 0.91496 0.87048 0.91525 0.87844 0.90158 0.86063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.37 9.81 113.37 1.11 1.48 16 2 O -0.34 -11.33 10.50 -93.28 -0.98 -12.31 16 3 C 0.12 4.34 6.68 22.48 0.15 4.49 16 4 C -0.21 -5.88 9.03 22.38 0.20 -5.68 16 5 C -0.13 -3.67 9.03 22.34 0.20 -3.46 16 6 C 0.04 1.43 6.70 22.56 0.15 1.58 16 7 O -0.34 -12.25 10.28 -80.41 -0.83 -13.08 16 8 C 0.02 0.40 9.81 113.37 1.11 1.52 16 9 C 0.13 5.90 5.97 22.56 0.13 6.03 16 10 O -0.32 -16.45 9.52 -79.52 -0.76 -17.21 16 11 C 0.21 11.10 2.07 29.85 0.06 11.16 16 12 H 0.03 1.88 5.40 -2.39 -0.01 1.86 16 13 C -0.55 -30.69 8.82 25.60 0.23 -30.47 16 14 H 0.06 3.67 7.82 -2.91 -0.02 3.64 16 15 C 0.03 1.43 5.22 84.65 0.44 1.87 16 16 N -0.91 -49.95 11.95 21.45 0.26 -49.69 16 17 Si 0.98 42.07 29.54 68.60 2.03 44.10 16 18 H -0.27 -10.96 7.11 99.48 0.71 -10.26 16 19 H -0.28 -11.46 7.11 99.48 0.71 -10.76 16 20 H -0.27 -11.48 7.11 99.48 0.71 -10.78 16 21 C -0.02 -0.97 6.22 71.98 0.45 -0.53 16 22 Cl -0.22 -9.63 25.53 -2.72 -0.07 -9.70 16 23 C -0.21 -9.22 6.93 22.45 0.16 -9.06 16 24 H 0.07 1.12 7.66 -2.39 -0.02 1.10 16 25 H 0.11 1.77 8.14 -2.39 -0.02 1.75 16 26 H 0.07 1.11 7.66 -2.39 -0.02 1.09 16 27 H 0.17 3.20 6.28 -2.91 -0.02 3.18 16 28 H 0.17 3.32 6.29 -2.91 -0.02 3.31 16 29 H 0.07 1.19 7.66 -2.39 -0.02 1.17 16 30 H 0.07 1.19 7.66 -2.39 -0.02 1.17 16 31 H 0.11 1.97 8.14 -2.39 -0.02 1.95 16 32 H 0.28 14.15 8.31 -92.71 -0.77 13.38 16 33 H 0.10 5.33 6.60 -2.39 -0.02 5.31 16 34 H 0.08 3.79 8.14 -2.38 -0.02 3.77 16 35 H 0.12 6.01 5.09 -2.91 -0.01 5.99 16 Total: -1.00 -67.22 305.79 5.16 -62.06 By element: Atomic # 1 Polarization: 15.78 SS G_CDS: 1.12 Total: 16.89 kcal Atomic # 6 Polarization: -25.46 SS G_CDS: 4.40 Total: -21.06 kcal Atomic # 7 Polarization: -49.95 SS G_CDS: 0.26 Total: -49.69 kcal Atomic # 8 Polarization: -40.03 SS G_CDS: -2.56 Total: -42.60 kcal Atomic # 14 Polarization: 42.07 SS G_CDS: 2.03 Total: 44.10 kcal Atomic # 17 Polarization: -9.63 SS G_CDS: -0.07 Total: -9.70 kcal Total: -67.22 5.16 -62.06 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001227076224.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.383 kcal (2) G-P(sol) polarization free energy of solvation -67.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds