Wall clock time and date at job start Tue Mar 31 2020 06:41:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.34021 * 119.57425 * 2 1 4 4 C 1.33774 * 122.05856 * 179.97438 * 3 2 1 5 5 C 1.34840 * 121.03346 * 0.02562 * 4 3 2 6 6 C 1.41723 * 119.01827 * 0.02562 * 5 4 3 7 7 O 1.22173 * 120.92666 * 179.97438 * 6 5 4 8 8 C 1.35113 * 119.56508 * 179.97438 * 2 1 3 9 9 O 1.36085 * 120.56415 * 0.02562 * 8 2 1 10 10 C 1.42896 * 117.00101 * 270.02194 * 9 8 2 11 11 H 1.09007 * 109.46881 * 330.00142 * 10 9 8 12 12 C 1.50698 * 109.47005 * 89.99325 * 10 9 8 13 13 H 1.08005 * 120.00362 * 239.99913 * 12 10 9 14 14 C 1.37876 * 119.99821 * 60.01006 * 12 10 9 15 15 N 1.31516 * 119.99919 * 359.97438 * 14 12 10 16 16 Si 1.86801 * 120.00113 * 179.97438 * 14 12 10 17 17 H 1.48505 * 109.46940 * 359.97438 * 16 14 12 18 18 H 1.48497 * 109.47313 * 119.99584 * 16 14 12 19 19 H 1.48497 * 109.47184 * 239.99808 * 16 14 12 20 20 C 1.50692 * 109.47504 * 209.99749 * 10 9 8 21 21 C 1.38237 * 119.99911 * 324.73023 * 20 10 9 22 22 C 1.38237 * 119.99808 * 179.79034 * 21 20 10 23 23 C 1.38230 * 120.00302 * 0.43084 * 22 21 20 24 24 C 1.38245 * 119.99909 * 359.81839 * 23 22 21 25 25 C 1.38230 * 119.99707 * 359.97438 * 24 23 22 26 26 H 1.09007 * 109.47142 * 359.97438 * 1 2 3 27 27 H 1.09002 * 109.47515 * 119.99792 * 1 2 3 28 28 H 1.08996 * 109.47710 * 239.99948 * 1 2 3 29 29 H 1.08001 * 119.48131 * 179.97438 * 4 3 2 30 30 H 1.08003 * 120.48744 * 180.02562 * 5 4 3 31 31 H 0.97005 * 119.99686 * 180.02562 * 15 14 12 32 32 H 1.07999 * 119.99808 * 359.97438 * 21 20 10 33 33 H 1.07998 * 119.99936 * 180.27198 * 22 21 20 34 34 H 1.08003 * 120.00704 * 179.83926 * 23 22 21 35 35 H 1.07997 * 119.99782 * 179.97438 * 24 23 22 36 36 H 1.08001 * 119.99920 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1684 1.1656 0.0000 4 6 3.5049 1.2236 0.0005 5 6 4.2495 0.0994 0.0005 6 6 3.5959 -1.1581 -0.0006 7 8 4.2362 -2.1986 -0.0010 8 6 2.1736 -1.1752 0.0005 9 8 1.4959 -2.3553 0.0005 10 6 1.1718 -2.9173 1.2737 11 1 1.9297 -2.6283 2.0020 12 6 -0.1740 -2.4071 1.7202 13 1 -0.2619 -1.8494 2.6409 14 6 -1.2933 -2.6525 0.9533 15 7 -1.1862 -3.3314 -0.1680 16 14 -2.9618 -2.0207 1.5070 17 1 -2.8136 -1.2927 2.7929 18 1 -3.5095 -1.1014 0.4775 19 1 -3.8886 -3.1662 1.6912 20 6 1.1283 -4.4195 1.1634 21 6 0.6610 -5.0143 0.0063 22 6 0.6250 -6.3924 -0.0966 23 6 1.0480 -7.1757 0.9609 24 6 1.5105 -6.5809 2.1200 25 6 1.5505 -5.2029 2.2212 26 1 -0.3634 1.0277 0.0005 27 1 -0.3634 -0.5138 -0.8900 28 1 -0.3634 -0.5138 0.8899 29 1 3.9952 2.1859 0.0001 30 1 5.3280 0.1565 0.0014 31 1 -1.9736 -3.5037 -0.7077 32 1 0.3267 -4.4023 -0.8184 33 1 0.2641 -6.8570 -1.0022 34 1 1.0176 -8.2524 0.8815 35 1 1.8406 -7.1930 2.9463 36 1 1.9114 -4.7383 3.1269 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001227242508.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:59 Heat of formation + Delta-G solvation = -27.653779 kcal Electronic energy + Delta-G solvation = -23005.529881 eV Core-core repulsion = 19615.390536 eV Total energy + Delta-G solvation = -3390.139345 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 286.104 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.43038 -38.54335 -37.86900 -36.58284 -33.20791 -32.37554 -31.81157 -30.28790 -29.55742 -27.62557 -26.50302 -23.99961 -22.81541 -22.02272 -21.33375 -20.18952 -18.03725 -17.82255 -16.56577 -16.22368 -16.05626 -15.66620 -14.99511 -14.73327 -14.22697 -13.78903 -13.44397 -13.40466 -13.12171 -12.98117 -12.89521 -12.34059 -12.18111 -12.04578 -11.72702 -11.47945 -11.45539 -11.00141 -10.89499 -10.50912 -10.38068 -10.01735 -9.52108 -9.27112 -9.13715 -8.83400 -8.20934 -7.78280 -7.67420 -7.41445 -6.10802 -4.42647 1.34619 1.64488 2.52828 2.68200 2.76274 3.10528 3.21671 3.22825 3.91804 4.15450 4.59086 4.84618 5.00634 5.05976 5.12773 5.37778 5.76513 5.78838 5.86672 5.98399 6.04954 6.22325 6.22957 6.39528 6.43159 6.56786 6.64100 6.80987 6.91862 7.04511 7.14693 7.33320 7.51330 7.54820 7.63057 7.81665 7.93749 8.06995 8.28097 8.30821 8.51707 8.97759 9.27564 10.70754 Molecular weight = 286.10amu Principal moments of inertia in cm(-1) A = 0.013979 B = 0.008344 C = 0.005742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2002.474935 B = 3354.718618 C = 4875.057877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C 0.090 3.910 3 O -0.215 6.215 4 C 0.101 3.899 5 C -0.318 4.318 6 C 0.374 3.626 7 O -0.489 6.489 8 C -0.054 4.054 9 O -0.288 6.288 10 C 0.250 3.750 11 H 0.019 0.981 12 C -0.547 4.547 13 H 0.067 0.933 14 C 0.087 3.913 15 N -0.837 5.837 16 Si 0.879 3.121 17 H -0.269 1.269 18 H -0.276 1.276 19 H -0.280 1.280 20 C -0.038 4.038 21 C -0.043 4.043 22 C -0.153 4.153 23 C -0.144 4.144 24 C -0.149 4.149 25 C -0.125 4.125 26 H 0.055 0.945 27 H 0.094 0.906 28 H 0.141 0.859 29 H 0.195 0.805 30 H 0.149 0.851 31 H 0.266 0.734 32 H 0.164 0.836 33 H 0.102 0.898 34 H 0.099 0.901 35 H 0.102 0.898 36 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.206 6.892 -0.110 7.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.042 3.958 3 O -0.118 6.118 4 C 0.035 3.965 5 C -0.338 4.338 6 C 0.264 3.736 7 O -0.375 6.375 8 C -0.101 4.101 9 O -0.204 6.204 10 C 0.197 3.803 11 H 0.037 0.963 12 C -0.583 4.583 13 H 0.085 0.915 14 C -0.120 4.120 15 N -0.471 5.471 16 Si 0.705 3.295 17 H -0.193 1.193 18 H -0.202 1.202 19 H -0.205 1.205 20 C -0.038 4.038 21 C -0.062 4.062 22 C -0.171 4.171 23 C -0.163 4.163 24 C -0.167 4.167 25 C -0.144 4.144 26 H 0.074 0.926 27 H 0.112 0.888 28 H 0.158 0.842 29 H 0.211 0.789 30 H 0.167 0.833 31 H 0.077 0.923 32 H 0.181 0.819 33 H 0.120 0.880 34 H 0.118 0.882 35 H 0.120 0.880 36 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 3.190 6.387 -0.417 7.152 hybrid contribution -0.715 0.196 0.544 0.919 sum 2.476 6.583 0.127 7.034 Atomic orbital electron populations 1.21478 0.84494 1.02220 1.08771 1.23134 0.95173 0.81919 0.95540 1.82896 1.19805 1.33702 1.75351 1.23912 0.79905 1.00257 0.92412 1.23069 1.02544 0.94071 1.14134 1.18251 0.89503 0.89489 0.76387 1.90767 1.68990 1.35401 1.42380 1.20095 0.91648 0.88614 1.09770 1.86321 1.71864 1.30289 1.31953 1.18832 0.93875 0.87080 0.80502 0.96270 1.21462 0.92072 1.36399 1.08380 0.91451 1.25029 0.98636 0.93742 0.94608 1.69876 1.29271 1.35450 1.12457 0.86756 0.84175 0.79266 0.79265 1.19315 1.20167 1.20519 1.19820 0.95423 0.95176 0.93397 1.21815 0.91535 0.93027 0.99844 1.21129 1.02930 0.95053 0.98033 1.20818 1.02531 0.98187 0.94728 1.20688 1.03800 0.94508 0.97698 1.20759 1.01732 0.93452 0.98422 0.92591 0.88801 0.84200 0.78868 0.83301 0.92342 0.81933 0.88000 0.88247 0.87965 0.87880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.09 8.80 36.00 0.32 -1.77 16 2 C 0.09 1.67 6.97 -35.42 -0.25 1.42 16 3 O -0.21 -3.22 9.73 7.86 0.08 -3.14 16 4 C 0.10 1.23 11.36 29.53 0.34 1.57 16 5 C -0.32 -4.89 10.03 -39.46 -0.40 -5.29 16 6 C 0.37 7.96 6.81 -36.72 -0.25 7.71 16 7 O -0.49 -12.22 17.75 -10.26 -0.18 -12.41 16 8 C -0.05 -1.18 5.55 -39.16 -0.22 -1.39 16 9 O -0.29 -7.17 7.59 -35.03 -0.27 -7.43 16 10 C 0.25 6.24 2.65 -29.04 -0.08 6.16 16 11 H 0.02 0.49 7.82 -51.92 -0.41 0.08 16 12 C -0.55 -13.37 6.09 -34.44 -0.21 -13.58 16 13 H 0.07 1.63 7.81 -52.48 -0.41 1.22 16 14 C 0.09 2.08 4.04 -17.82 -0.07 2.01 16 15 N -0.84 -20.56 8.50 55.43 0.47 -20.08 16 16 Si 0.88 18.60 29.02 -169.99 -4.93 13.67 16 17 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 18 H -0.28 -5.67 7.11 56.52 0.40 -5.26 16 19 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 20 C -0.04 -0.93 4.80 -104.63 -0.50 -1.44 16 21 C -0.04 -1.06 7.46 -39.58 -0.30 -1.36 16 22 C -0.15 -3.33 10.05 -39.58 -0.40 -3.73 16 23 C -0.14 -2.92 10.05 -39.58 -0.40 -3.31 16 24 C -0.15 -3.05 10.05 -39.58 -0.40 -3.44 16 25 C -0.13 -2.85 9.68 -39.58 -0.38 -3.23 16 26 H 0.06 0.83 8.13 -51.93 -0.42 0.41 16 27 H 0.09 1.83 8.14 -51.93 -0.42 1.40 16 28 H 0.14 2.86 3.63 -51.93 -0.19 2.67 16 29 H 0.19 1.24 8.06 -52.49 -0.42 0.82 16 30 H 0.15 1.93 8.06 -52.48 -0.42 1.51 16 31 H 0.27 6.25 8.31 -40.82 -0.34 5.91 16 32 H 0.16 4.21 5.50 -52.49 -0.29 3.92 16 33 H 0.10 1.97 8.06 -52.49 -0.42 1.55 16 34 H 0.10 1.70 8.06 -52.48 -0.42 1.27 16 35 H 0.10 1.78 8.06 -52.49 -0.42 1.35 16 36 H 0.10 2.17 8.06 -52.49 -0.42 1.75 16 LS Contribution 305.98 15.07 4.61 4.61 Total: -1.00 -29.60 305.98 -7.22 -36.83 By element: Atomic # 1 Polarization: 11.43 SS G_CDS: -3.81 Total: 7.62 kcal Atomic # 6 Polarization: -16.47 SS G_CDS: -3.19 Total: -19.66 kcal Atomic # 7 Polarization: -20.56 SS G_CDS: 0.47 Total: -20.08 kcal Atomic # 8 Polarization: -22.61 SS G_CDS: -0.37 Total: -22.98 kcal Atomic # 14 Polarization: 18.60 SS G_CDS: -4.93 Total: 13.67 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -29.60 -7.22 -36.83 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001227242508.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.173 kcal (2) G-P(sol) polarization free energy of solvation -29.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds