Wall clock time and date at job start Tue Mar 31 2020 06:41:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.34021 * 119.57425 * 2 1 4 4 C 1.33774 * 122.05856 * 179.97438 * 3 2 1 5 5 C 1.34840 * 121.03346 * 0.02562 * 4 3 2 6 6 C 1.41723 * 119.01827 * 0.02562 * 5 4 3 7 7 O 1.22173 * 120.92666 * 179.97438 * 6 5 4 8 8 C 1.35113 * 119.56508 * 179.97438 * 2 1 3 9 9 O 1.36085 * 120.56415 * 0.02562 * 8 2 1 10 10 C 1.42896 * 117.00101 * 270.02194 * 9 8 2 11 11 H 1.09007 * 109.46881 * 330.00142 * 10 9 8 12 12 C 1.50698 * 109.47005 * 89.99325 * 10 9 8 13 13 H 1.08005 * 120.00362 * 239.99913 * 12 10 9 14 14 C 1.37876 * 119.99821 * 60.01006 * 12 10 9 15 15 N 1.31516 * 119.99919 * 359.97438 * 14 12 10 16 16 Si 1.86801 * 120.00113 * 179.97438 * 14 12 10 17 17 H 1.48505 * 109.46940 * 359.97438 * 16 14 12 18 18 H 1.48497 * 109.47313 * 119.99584 * 16 14 12 19 19 H 1.48497 * 109.47184 * 239.99808 * 16 14 12 20 20 C 1.50692 * 109.47504 * 209.99749 * 10 9 8 21 21 C 1.38237 * 119.99911 * 324.73023 * 20 10 9 22 22 C 1.38237 * 119.99808 * 179.79034 * 21 20 10 23 23 C 1.38230 * 120.00302 * 0.43084 * 22 21 20 24 24 C 1.38245 * 119.99909 * 359.81839 * 23 22 21 25 25 C 1.38230 * 119.99707 * 359.97438 * 24 23 22 26 26 H 1.09007 * 109.47142 * 359.97438 * 1 2 3 27 27 H 1.09002 * 109.47515 * 119.99792 * 1 2 3 28 28 H 1.08996 * 109.47710 * 239.99948 * 1 2 3 29 29 H 1.08001 * 119.48131 * 179.97438 * 4 3 2 30 30 H 1.08003 * 120.48744 * 180.02562 * 5 4 3 31 31 H 0.97005 * 119.99686 * 180.02562 * 15 14 12 32 32 H 1.07999 * 119.99808 * 359.97438 * 21 20 10 33 33 H 1.07998 * 119.99936 * 180.27198 * 22 21 20 34 34 H 1.08003 * 120.00704 * 179.83926 * 23 22 21 35 35 H 1.07997 * 119.99782 * 179.97438 * 24 23 22 36 36 H 1.08001 * 119.99920 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1684 1.1656 0.0000 4 6 3.5049 1.2236 0.0005 5 6 4.2495 0.0994 0.0005 6 6 3.5959 -1.1581 -0.0006 7 8 4.2362 -2.1986 -0.0010 8 6 2.1736 -1.1752 0.0005 9 8 1.4959 -2.3553 0.0005 10 6 1.1718 -2.9173 1.2737 11 1 1.9297 -2.6283 2.0020 12 6 -0.1740 -2.4071 1.7202 13 1 -0.2619 -1.8494 2.6409 14 6 -1.2933 -2.6525 0.9533 15 7 -1.1862 -3.3314 -0.1680 16 14 -2.9618 -2.0207 1.5070 17 1 -2.8136 -1.2927 2.7929 18 1 -3.5095 -1.1014 0.4775 19 1 -3.8886 -3.1662 1.6912 20 6 1.1283 -4.4195 1.1634 21 6 0.6610 -5.0143 0.0063 22 6 0.6250 -6.3924 -0.0966 23 6 1.0480 -7.1757 0.9609 24 6 1.5105 -6.5809 2.1200 25 6 1.5505 -5.2029 2.2212 26 1 -0.3634 1.0277 0.0005 27 1 -0.3634 -0.5138 -0.8900 28 1 -0.3634 -0.5138 0.8899 29 1 3.9952 2.1859 0.0001 30 1 5.3280 0.1565 0.0014 31 1 -1.9736 -3.5037 -0.7077 32 1 0.3267 -4.4023 -0.8184 33 1 0.2641 -6.8570 -1.0022 34 1 1.0176 -8.2524 0.8815 35 1 1.8406 -7.1930 2.9463 36 1 1.9114 -4.7383 3.1269 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001227242508.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:58 Heat of formation + Delta-G solvation = -44.248036 kcal Electronic energy + Delta-G solvation = -23006.249462 eV Core-core repulsion = 19615.390536 eV Total energy + Delta-G solvation = -3390.858926 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 286.104 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.83184 -40.22342 -39.50030 -38.28122 -35.00259 -33.77557 -33.35846 -32.01180 -31.27907 -29.27821 -28.15982 -25.53831 -24.45576 -23.52704 -23.05087 -21.94056 -19.50394 -19.39718 -18.10728 -17.79205 -17.59003 -17.19234 -16.73203 -16.37462 -15.90058 -15.33649 -15.14055 -14.99455 -14.80462 -14.53740 -14.38563 -13.97351 -13.73213 -13.62287 -13.44995 -13.19945 -13.04761 -12.68955 -12.51064 -12.22176 -12.06486 -11.76020 -11.31198 -10.91649 -10.71848 -10.40310 -9.91793 -9.48288 -9.36330 -9.16171 -7.91724 -6.30860 0.00565 0.19016 0.79179 0.96347 1.39793 1.45387 1.48622 1.54650 2.38674 2.40537 3.06054 3.23384 3.31444 3.60393 3.80232 4.02915 4.28623 4.33551 4.36339 4.39087 4.58411 4.59660 4.79013 4.82149 4.88301 4.94389 5.08557 5.16640 5.22667 5.42093 5.52023 5.60822 5.67744 5.83425 6.00771 6.09910 6.21381 6.32346 6.50660 6.61448 6.77120 7.22124 7.43647 8.89122 Molecular weight = 286.10amu Principal moments of inertia in cm(-1) A = 0.013979 B = 0.008344 C = 0.005742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2002.474935 B = 3354.718618 C = 4875.057877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C 0.121 3.879 3 O -0.200 6.200 4 C 0.144 3.856 5 C -0.340 4.340 6 C 0.357 3.643 7 O -0.556 6.556 8 C -0.110 4.110 9 O -0.309 6.309 10 C 0.255 3.745 11 H -0.009 1.009 12 C -0.558 4.558 13 H 0.061 0.939 14 C 0.062 3.938 15 N -0.853 5.853 16 Si 0.932 3.068 17 H -0.265 1.265 18 H -0.262 1.262 19 H -0.290 1.290 20 C -0.069 4.069 21 C -0.066 4.066 22 C -0.160 4.160 23 C -0.140 4.140 24 C -0.144 4.144 25 C -0.147 4.147 26 H 0.096 0.904 27 H 0.078 0.922 28 H 0.121 0.879 29 H 0.272 0.728 30 H 0.175 0.825 31 H 0.265 0.735 32 H 0.141 0.859 33 H 0.123 0.877 34 H 0.141 0.859 35 H 0.140 0.860 36 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.969 8.724 0.163 9.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.072 3.928 3 O -0.100 6.100 4 C 0.079 3.921 5 C -0.359 4.359 6 C 0.252 3.748 7 O -0.448 6.448 8 C -0.157 4.157 9 O -0.226 6.226 10 C 0.201 3.799 11 H 0.009 0.991 12 C -0.594 4.594 13 H 0.079 0.921 14 C -0.144 4.144 15 N -0.487 5.487 16 Si 0.757 3.243 17 H -0.189 1.189 18 H -0.186 1.186 19 H -0.216 1.216 20 C -0.070 4.070 21 C -0.085 4.085 22 C -0.178 4.178 23 C -0.158 4.158 24 C -0.162 4.162 25 C -0.165 4.165 26 H 0.115 0.885 27 H 0.097 0.903 28 H 0.139 0.861 29 H 0.287 0.713 30 H 0.193 0.807 31 H 0.075 0.925 32 H 0.158 0.842 33 H 0.141 0.859 34 H 0.159 0.841 35 H 0.157 0.843 36 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 2.951 8.267 -0.149 8.779 hybrid contribution -0.596 -0.248 0.446 0.785 sum 2.356 8.019 0.297 8.363 Atomic orbital electron populations 1.21369 0.84280 1.04279 1.06986 1.23054 0.95603 0.82010 0.92113 1.82984 1.21624 1.31378 1.74048 1.25186 0.77921 1.02047 0.86941 1.23042 1.04101 0.92167 1.16639 1.18911 0.89482 0.91160 0.75271 1.90719 1.69768 1.37711 1.46612 1.20553 0.92622 0.88915 1.13652 1.86270 1.72588 1.31933 1.31835 1.18727 0.93248 0.87677 0.80249 0.99070 1.21420 0.92417 1.37140 1.08404 0.92129 1.25487 1.00879 0.93642 0.94411 1.70049 1.29712 1.35893 1.13049 0.85940 0.80448 0.78591 0.79343 1.18911 1.18624 1.21612 1.20068 0.96880 0.95537 0.94505 1.21677 0.93224 0.94322 0.99308 1.21418 1.02637 0.94130 0.99621 1.21257 1.00709 1.00151 0.93648 1.21122 1.02352 0.93725 0.98987 1.21014 1.02372 0.94861 0.98251 0.88533 0.90337 0.86114 0.71298 0.80729 0.92471 0.84177 0.85874 0.84145 0.84260 0.87436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.08 8.80 71.23 0.63 -3.45 16 2 C 0.12 4.43 6.97 24.96 0.17 4.60 16 3 O -0.20 -5.23 9.73 5.20 0.05 -5.18 16 4 C 0.14 2.82 11.36 67.04 0.76 3.58 16 5 C -0.34 -9.87 10.03 22.35 0.22 -9.65 16 6 C 0.36 15.84 6.81 24.12 0.16 16.01 16 7 O -0.56 -29.95 17.75 8.48 0.15 -29.80 16 8 C -0.11 -5.06 5.55 22.54 0.13 -4.93 16 9 O -0.31 -16.51 7.59 -80.15 -0.61 -17.11 16 10 C 0.25 13.59 2.65 29.10 0.08 13.66 16 11 H -0.01 -0.49 7.82 -2.38 -0.02 -0.51 16 12 C -0.56 -28.50 6.09 25.60 0.16 -28.35 16 13 H 0.06 3.07 7.81 -2.91 -0.02 3.04 16 14 C 0.06 3.03 4.04 84.65 0.34 3.37 16 15 N -0.85 -43.56 8.50 21.45 0.18 -43.38 16 16 Si 0.93 38.41 29.02 68.60 1.99 40.40 16 17 H -0.27 -10.66 7.11 99.48 0.71 -9.95 16 18 H -0.26 -10.09 7.11 99.48 0.71 -9.38 16 19 H -0.29 -12.39 7.11 99.48 0.71 -11.68 16 20 C -0.07 -3.64 4.80 -19.87 -0.10 -3.74 16 21 C -0.07 -3.40 7.46 22.27 0.17 -3.23 16 22 C -0.16 -6.97 10.05 22.27 0.22 -6.75 16 23 C -0.14 -5.41 10.05 22.27 0.22 -5.18 16 24 C -0.14 -5.74 10.05 22.27 0.22 -5.52 16 25 C -0.15 -6.89 9.68 22.27 0.22 -6.67 16 26 H 0.10 2.61 8.13 -2.38 -0.02 2.59 16 27 H 0.08 3.09 8.14 -2.39 -0.02 3.07 16 28 H 0.12 4.97 3.63 -2.39 -0.01 4.96 16 29 H 0.27 1.23 8.06 -2.91 -0.02 1.21 16 30 H 0.18 4.13 8.06 -2.91 -0.02 4.10 16 31 H 0.26 12.89 8.31 -92.70 -0.77 12.12 16 32 H 0.14 7.75 5.50 -2.91 -0.02 7.74 16 33 H 0.12 4.70 8.06 -2.91 -0.02 4.68 16 34 H 0.14 4.26 8.06 -2.91 -0.02 4.24 16 35 H 0.14 4.45 8.06 -2.91 -0.02 4.43 16 36 H 0.11 4.76 8.06 -2.91 -0.02 4.73 16 Total: -1.00 -72.41 305.98 6.48 -65.94 By element: Atomic # 1 Polarization: 24.27 SS G_CDS: 1.10 Total: 25.38 kcal Atomic # 6 Polarization: -39.85 SS G_CDS: 3.61 Total: -36.24 kcal Atomic # 7 Polarization: -43.56 SS G_CDS: 0.18 Total: -43.38 kcal Atomic # 8 Polarization: -51.69 SS G_CDS: -0.41 Total: -52.10 kcal Atomic # 14 Polarization: 38.41 SS G_CDS: 1.99 Total: 40.40 kcal Total: -72.41 6.48 -65.94 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001227242508.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.689 kcal (2) G-P(sol) polarization free energy of solvation -72.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds