Wall clock time and date at job start Tue Mar 31 2020 06:42:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.34024 * 119.57050 * 2 1 4 4 C 1.33778 * 122.05657 * 180.02562 * 3 2 1 5 5 C 1.34842 * 121.03219 * 0.02562 * 4 3 2 6 6 C 1.41730 * 119.01685 * 359.72391 * 5 4 3 7 7 O 1.22173 * 120.91983 * 180.25233 * 6 5 4 8 8 C 1.35109 * 119.56889 * 180.02562 * 2 1 3 9 9 O 1.36090 * 120.55918 * 359.97438 * 8 2 1 10 10 C 1.42904 * 116.99693 * 275.01815 * 9 8 2 11 11 H 1.09001 * 109.47335 * 34.70298 * 10 9 8 12 12 C 1.50703 * 109.46985 * 274.70091 * 10 9 8 13 13 H 1.08005 * 119.99868 * 305.50976 * 12 10 9 14 14 C 1.37877 * 119.99764 * 125.50546 * 12 10 9 15 15 N 1.31511 * 120.00457 * 5.68633 * 14 12 10 16 16 Si 1.86807 * 119.99547 * 185.67969 * 14 12 10 17 17 H 1.48501 * 109.46890 * 270.00070 * 16 14 12 18 18 H 1.48492 * 109.47373 * 30.00196 * 16 14 12 19 19 H 1.48499 * 109.46929 * 150.00466 * 16 14 12 20 20 C 1.50701 * 109.47080 * 154.70321 * 10 9 8 21 21 C 1.38230 * 119.99789 * 34.99329 * 20 10 9 22 22 C 1.38237 * 119.99770 * 179.80968 * 21 20 10 23 23 C 1.38238 * 119.99924 * 0.39999 * 22 21 20 24 24 C 1.38232 * 119.99728 * 359.85446 * 23 22 21 25 25 C 1.38230 * 120.00207 * 359.95764 * 24 23 22 26 26 H 1.09002 * 109.47075 * 274.84619 * 1 2 3 27 27 H 1.09001 * 109.46997 * 34.83771 * 1 2 3 28 28 H 1.08997 * 109.47249 * 154.83825 * 1 2 3 29 29 H 1.07997 * 119.48387 * 180.02562 * 4 3 2 30 30 H 1.07995 * 120.49011 * 180.02562 * 5 4 3 31 31 H 0.96999 * 119.99511 * 355.05615 * 15 14 12 32 32 H 1.07997 * 120.00512 * 0.02562 * 21 20 10 33 33 H 1.07999 * 120.00352 * 180.23123 * 22 21 20 34 34 H 1.07997 * 120.00020 * 179.83142 * 23 22 21 35 35 H 1.08001 * 119.99469 * 179.97438 * 24 23 22 36 36 H 1.08007 * 120.00132 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1684 1.1657 0.0000 4 6 3.5049 1.2237 -0.0005 5 6 4.2495 0.0995 -0.0016 6 6 3.5959 -1.1581 0.0038 7 8 4.2363 -2.1984 0.0077 8 6 2.1737 -1.1751 -0.0005 9 8 1.4959 -2.3552 -0.0005 10 6 1.0767 -2.8626 1.2680 11 1 0.8107 -2.0319 1.9217 12 6 2.2004 -3.6512 1.8897 13 1 2.6584 -4.4620 1.3425 14 6 2.6437 -3.3377 3.1571 15 7 2.0150 -2.4266 3.8671 16 14 4.1374 -4.2073 3.8657 17 1 3.7020 -5.4288 4.5894 18 1 5.0583 -4.5864 2.7643 19 1 4.8392 -3.2981 4.8069 20 6 -0.1212 -3.7574 1.0801 21 6 -0.2249 -4.5449 -0.0513 22 6 -1.3218 -5.3687 -0.2217 23 6 -2.3189 -5.3988 0.7353 24 6 -2.2176 -4.6075 1.8641 25 6 -1.1188 -3.7866 2.0364 26 1 -0.3633 0.0868 1.0240 27 1 -0.3633 0.8435 -0.5871 28 1 -0.3633 -0.9301 -0.4369 29 1 3.9952 2.1860 -0.0001 30 1 5.3280 0.1566 -0.0015 31 1 1.2843 -1.9243 3.4737 32 1 0.5526 -4.5191 -0.8004 33 1 -1.4012 -5.9867 -1.1038 34 1 -3.1772 -6.0404 0.6008 35 1 -2.9968 -4.6307 2.6116 36 1 -1.0395 -3.1685 2.9186 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001227242509.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:02 Heat of formation + Delta-G solvation = -40.015657 kcal Electronic energy + Delta-G solvation = -22803.417191 eV Core-core repulsion = 19412.741795 eV Total energy + Delta-G solvation = -3390.675396 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 286.104 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.45277 -38.85200 -38.00518 -36.79664 -33.54915 -32.37946 -31.80985 -30.69110 -30.19828 -27.61094 -26.24912 -23.89930 -23.11366 -22.12686 -21.83040 -20.55117 -18.23550 -17.80650 -16.95015 -16.46256 -16.22310 -15.86789 -15.00506 -14.69827 -14.05496 -13.85108 -13.70502 -13.58298 -13.52922 -13.18119 -13.03869 -12.72033 -12.70268 -12.50275 -12.10198 -11.93474 -11.53992 -11.02192 -10.82440 -10.43363 -10.30382 -10.12993 -9.79307 -9.22692 -9.02990 -8.66980 -8.41440 -8.26282 -7.93081 -7.66904 -6.55551 -4.25889 1.40895 1.51216 2.05996 2.09330 2.69934 3.39200 3.47358 3.65523 3.91107 4.40268 4.48790 4.60139 4.82648 4.89264 5.21153 5.25660 5.45568 5.49551 5.53960 5.60735 5.67568 5.72936 5.91075 6.04341 6.08732 6.21239 6.22887 6.39682 6.53149 6.60045 6.71254 6.77510 7.10673 7.20139 7.42520 7.52398 7.67633 7.81764 8.13833 8.40726 8.66282 8.70817 9.41046 10.78026 Molecular weight = 286.10amu Principal moments of inertia in cm(-1) A = 0.012806 B = 0.008139 C = 0.005895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2186.015770 B = 3439.250866 C = 4748.283833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.044 3.956 3 O -0.215 6.215 4 C 0.098 3.902 5 C -0.310 4.310 6 C 0.380 3.620 7 O -0.452 6.452 8 C -0.019 4.019 9 O -0.323 6.323 10 C 0.220 3.780 11 H 0.046 0.954 12 C -0.574 4.574 13 H 0.063 0.937 14 C 0.031 3.969 15 N -0.898 5.898 16 Si 1.068 2.932 17 H -0.285 1.285 18 H -0.280 1.280 19 H -0.283 1.283 20 C -0.030 4.030 21 C -0.108 4.108 22 C -0.126 4.126 23 C -0.148 4.148 24 C -0.122 4.122 25 C -0.120 4.120 26 H 0.083 0.917 27 H 0.077 0.923 28 H 0.099 0.901 29 H 0.196 0.804 30 H 0.151 0.849 31 H 0.265 0.735 32 H 0.120 0.880 33 H 0.111 0.889 34 H 0.110 0.890 35 H 0.112 0.888 36 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.580 6.745 -6.576 10.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.003 4.003 3 O -0.118 6.118 4 C 0.032 3.968 5 C -0.330 4.330 6 C 0.265 3.735 7 O -0.334 6.334 8 C -0.066 4.066 9 O -0.241 6.241 10 C 0.167 3.833 11 H 0.063 0.937 12 C -0.611 4.611 13 H 0.082 0.918 14 C -0.175 4.175 15 N -0.536 5.536 16 Si 0.894 3.106 17 H -0.211 1.211 18 H -0.205 1.205 19 H -0.208 1.208 20 C -0.031 4.031 21 C -0.127 4.127 22 C -0.144 4.144 23 C -0.166 4.166 24 C -0.140 4.140 25 C -0.138 4.138 26 H 0.102 0.898 27 H 0.096 0.904 28 H 0.117 0.883 29 H 0.213 0.787 30 H 0.169 0.831 31 H 0.078 0.922 32 H 0.138 0.862 33 H 0.129 0.871 34 H 0.128 0.872 35 H 0.130 0.870 36 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -3.529 6.138 -5.355 8.877 hybrid contribution -0.565 0.092 -0.996 1.149 sum -4.094 6.230 -6.350 9.793 Atomic orbital electron populations 1.20707 0.85904 1.04601 1.03876 1.22612 0.94562 0.82712 1.00412 1.82799 1.20058 1.32570 1.76420 1.23860 0.79507 1.00314 0.93100 1.23124 1.02722 0.94048 1.13102 1.17958 0.89055 0.89538 0.76961 1.90796 1.68486 1.35175 1.38974 1.20087 0.92781 0.86897 1.06880 1.86083 1.71721 1.32576 1.33754 1.19335 0.90762 0.92619 0.80554 0.93658 1.22235 1.16847 1.18749 1.03285 0.91846 1.25980 1.00901 0.96587 0.93984 1.70918 1.22325 1.22725 1.37635 0.83571 0.75376 0.75765 0.75847 1.21141 1.20547 1.20820 1.20112 0.92925 0.96917 0.93112 1.20972 0.97567 0.96142 0.97978 1.21037 0.94958 0.99434 0.98984 1.20887 0.99264 1.00953 0.95488 1.20933 0.98043 0.97433 0.97620 1.20863 0.93561 1.00334 0.99054 0.89827 0.90382 0.88275 0.78720 0.83108 0.92204 0.86186 0.87104 0.87233 0.86988 0.86659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.38 9.85 36.01 0.35 -1.02 16 2 C 0.04 0.78 6.97 -35.42 -0.25 0.54 16 3 O -0.22 -3.22 9.74 7.84 0.08 -3.15 16 4 C 0.10 1.28 11.36 29.53 0.34 1.62 16 5 C -0.31 -5.23 10.03 -39.45 -0.40 -5.63 16 6 C 0.38 8.64 6.81 -36.72 -0.25 8.39 16 7 O -0.45 -12.14 17.29 -10.25 -0.18 -12.32 16 8 C -0.02 -0.42 5.51 -39.16 -0.22 -0.63 16 9 O -0.32 -7.77 7.63 -35.04 -0.27 -8.04 16 10 C 0.22 5.48 2.44 -29.03 -0.07 5.41 16 11 H 0.05 1.17 5.44 -51.93 -0.28 0.89 16 12 C -0.57 -16.36 8.10 -34.44 -0.28 -16.63 16 13 H 0.06 1.93 7.82 -52.48 -0.41 1.52 16 14 C 0.03 0.88 5.45 -17.82 -0.10 0.78 16 15 N -0.90 -26.06 13.65 55.43 0.76 -25.31 16 16 Si 1.07 26.41 29.91 -169.99 -5.08 21.33 16 17 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 18 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 19 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 20 C -0.03 -0.68 4.99 -104.63 -0.52 -1.20 16 21 C -0.11 -2.25 9.35 -39.58 -0.37 -2.62 16 22 C -0.13 -2.21 10.05 -39.58 -0.40 -2.61 16 23 C -0.15 -2.44 10.05 -39.58 -0.40 -2.83 16 24 C -0.12 -2.14 10.05 -39.59 -0.40 -2.54 16 25 C -0.12 -2.46 9.68 -39.59 -0.38 -2.85 16 26 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 27 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 28 H 0.10 1.54 7.31 -51.93 -0.38 1.16 16 29 H 0.20 1.44 8.06 -52.49 -0.42 1.01 16 30 H 0.15 2.20 8.06 -52.49 -0.42 1.77 16 31 H 0.27 7.51 6.28 -40.82 -0.26 7.25 16 32 H 0.12 2.56 7.63 -52.49 -0.40 2.16 16 33 H 0.11 1.63 8.06 -52.49 -0.42 1.21 16 34 H 0.11 1.47 8.06 -52.49 -0.42 1.04 16 35 H 0.11 1.64 8.06 -52.49 -0.42 1.22 16 36 H 0.12 2.39 8.06 -52.48 -0.42 1.97 16 LS Contribution 319.32 15.07 4.81 4.81 Total: -1.00 -34.27 319.32 -7.12 -41.39 By element: Atomic # 1 Polarization: 7.02 SS G_CDS: -3.91 Total: 3.12 kcal Atomic # 6 Polarization: -18.50 SS G_CDS: -3.33 Total: -21.83 kcal Atomic # 7 Polarization: -26.06 SS G_CDS: 0.76 Total: -25.31 kcal Atomic # 8 Polarization: -23.14 SS G_CDS: -0.37 Total: -23.51 kcal Atomic # 14 Polarization: 26.41 SS G_CDS: -5.08 Total: 21.33 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -34.27 -7.12 -41.39 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001227242509.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.374 kcal (2) G-P(sol) polarization free energy of solvation -34.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds