Wall clock time and date at job start Tue Mar 31 2020 06:42:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.34024 * 119.57050 * 2 1 4 4 C 1.33778 * 122.05657 * 180.02562 * 3 2 1 5 5 C 1.34842 * 121.03219 * 0.02562 * 4 3 2 6 6 C 1.41730 * 119.01685 * 359.72391 * 5 4 3 7 7 O 1.22173 * 120.91983 * 180.25233 * 6 5 4 8 8 C 1.35109 * 119.56889 * 180.02562 * 2 1 3 9 9 O 1.36090 * 120.55918 * 359.97438 * 8 2 1 10 10 C 1.42904 * 116.99693 * 275.01815 * 9 8 2 11 11 H 1.09001 * 109.47335 * 34.70298 * 10 9 8 12 12 C 1.50703 * 109.46985 * 274.70091 * 10 9 8 13 13 H 1.08005 * 119.99868 * 305.50976 * 12 10 9 14 14 C 1.37877 * 119.99764 * 125.50546 * 12 10 9 15 15 N 1.31511 * 120.00457 * 5.68633 * 14 12 10 16 16 Si 1.86807 * 119.99547 * 185.67969 * 14 12 10 17 17 H 1.48501 * 109.46890 * 270.00070 * 16 14 12 18 18 H 1.48492 * 109.47373 * 30.00196 * 16 14 12 19 19 H 1.48499 * 109.46929 * 150.00466 * 16 14 12 20 20 C 1.50701 * 109.47080 * 154.70321 * 10 9 8 21 21 C 1.38230 * 119.99789 * 34.99329 * 20 10 9 22 22 C 1.38237 * 119.99770 * 179.80968 * 21 20 10 23 23 C 1.38238 * 119.99924 * 0.39999 * 22 21 20 24 24 C 1.38232 * 119.99728 * 359.85446 * 23 22 21 25 25 C 1.38230 * 120.00207 * 359.95764 * 24 23 22 26 26 H 1.09002 * 109.47075 * 274.84619 * 1 2 3 27 27 H 1.09001 * 109.46997 * 34.83771 * 1 2 3 28 28 H 1.08997 * 109.47249 * 154.83825 * 1 2 3 29 29 H 1.07997 * 119.48387 * 180.02562 * 4 3 2 30 30 H 1.07995 * 120.49011 * 180.02562 * 5 4 3 31 31 H 0.96999 * 119.99511 * 355.05615 * 15 14 12 32 32 H 1.07997 * 120.00512 * 0.02562 * 21 20 10 33 33 H 1.07999 * 120.00352 * 180.23123 * 22 21 20 34 34 H 1.07997 * 120.00020 * 179.83142 * 23 22 21 35 35 H 1.08001 * 119.99469 * 179.97438 * 24 23 22 36 36 H 1.08007 * 120.00132 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1684 1.1657 0.0000 4 6 3.5049 1.2237 -0.0005 5 6 4.2495 0.0995 -0.0016 6 6 3.5959 -1.1581 0.0038 7 8 4.2363 -2.1984 0.0077 8 6 2.1737 -1.1751 -0.0005 9 8 1.4959 -2.3552 -0.0005 10 6 1.0767 -2.8626 1.2680 11 1 0.8107 -2.0319 1.9217 12 6 2.2004 -3.6512 1.8897 13 1 2.6584 -4.4620 1.3425 14 6 2.6437 -3.3377 3.1571 15 7 2.0150 -2.4266 3.8671 16 14 4.1374 -4.2073 3.8657 17 1 3.7020 -5.4288 4.5894 18 1 5.0583 -4.5864 2.7643 19 1 4.8392 -3.2981 4.8069 20 6 -0.1212 -3.7574 1.0801 21 6 -0.2249 -4.5449 -0.0513 22 6 -1.3218 -5.3687 -0.2217 23 6 -2.3189 -5.3988 0.7353 24 6 -2.2176 -4.6075 1.8641 25 6 -1.1188 -3.7866 2.0364 26 1 -0.3633 0.0868 1.0240 27 1 -0.3633 0.8435 -0.5871 28 1 -0.3633 -0.9301 -0.4369 29 1 3.9952 2.1860 -0.0001 30 1 5.3280 0.1566 -0.0015 31 1 1.2843 -1.9243 3.4737 32 1 0.5526 -4.5191 -0.8004 33 1 -1.4012 -5.9867 -1.1038 34 1 -3.1772 -6.0404 0.6008 35 1 -2.9968 -4.6307 2.6116 36 1 -1.0395 -3.1685 2.9186 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001227242509.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:02 Heat of formation + Delta-G solvation = -61.390239 kcal Electronic energy + Delta-G solvation = -22804.344062 eV Core-core repulsion = 19412.741795 eV Total energy + Delta-G solvation = -3391.602268 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 286.104 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.90589 -40.46402 -39.59762 -38.48793 -35.49407 -33.82499 -33.42446 -32.27729 -31.68593 -29.02971 -28.11770 -25.58898 -24.80683 -23.62130 -23.32262 -22.16573 -19.92438 -19.35239 -18.71342 -17.96845 -17.69263 -17.31228 -16.65141 -16.23701 -15.87891 -15.68577 -15.43212 -15.17070 -15.08793 -14.68071 -14.52638 -14.17949 -14.11067 -13.98413 -13.71931 -13.42641 -13.00184 -12.79201 -12.69600 -12.14951 -12.12559 -11.91629 -11.56497 -10.91468 -10.76183 -10.54789 -10.11539 -9.75429 -9.60562 -9.35482 -8.73692 -6.46555 -0.08331 0.11407 0.56122 0.59399 1.34744 1.36296 1.46324 1.66653 2.30044 2.40583 2.89008 3.05146 3.11815 3.39170 3.70025 3.87181 4.06416 4.17836 4.20892 4.25997 4.32457 4.38973 4.49600 4.57553 4.64679 4.80358 4.83163 4.86248 5.04735 5.18314 5.18973 5.25139 5.64559 5.68117 5.73687 5.88142 5.96501 6.09737 6.20631 6.45927 6.59935 7.00742 7.27565 8.57899 Molecular weight = 286.10amu Principal moments of inertia in cm(-1) A = 0.012806 B = 0.008139 C = 0.005895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2186.015770 B = 3439.250866 C = 4748.283833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C 0.092 3.908 3 O -0.197 6.197 4 C 0.143 3.857 5 C -0.343 4.343 6 C 0.356 3.644 7 O -0.531 6.531 8 C -0.092 4.092 9 O -0.333 6.333 10 C 0.232 3.768 11 H 0.029 0.971 12 C -0.587 4.587 13 H 0.024 0.976 14 C -0.008 4.008 15 N -0.918 5.918 16 Si 1.097 2.903 17 H -0.262 1.262 18 H -0.294 1.294 19 H -0.271 1.271 20 C -0.061 4.061 21 C -0.128 4.128 22 C -0.119 4.119 23 C -0.132 4.132 24 C -0.115 4.115 25 C -0.136 4.136 26 H 0.092 0.908 27 H 0.124 0.876 28 H 0.085 0.915 29 H 0.272 0.728 30 H 0.171 0.829 31 H 0.259 0.741 32 H 0.097 0.903 33 H 0.144 0.856 34 H 0.157 0.843 35 H 0.148 0.852 36 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.971 8.641 -6.868 13.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.043 3.957 3 O -0.098 6.098 4 C 0.078 3.922 5 C -0.363 4.363 6 C 0.248 3.752 7 O -0.420 6.420 8 C -0.139 4.139 9 O -0.251 6.251 10 C 0.179 3.821 11 H 0.047 0.953 12 C -0.625 4.625 13 H 0.043 0.957 14 C -0.208 4.208 15 N -0.557 5.557 16 Si 0.920 3.080 17 H -0.187 1.187 18 H -0.220 1.220 19 H -0.196 1.196 20 C -0.062 4.062 21 C -0.147 4.147 22 C -0.137 4.137 23 C -0.150 4.150 24 C -0.132 4.132 25 C -0.155 4.155 26 H 0.110 0.890 27 H 0.143 0.857 28 H 0.104 0.896 29 H 0.287 0.713 30 H 0.188 0.812 31 H 0.071 0.929 32 H 0.116 0.884 33 H 0.162 0.838 34 H 0.174 0.826 35 H 0.166 0.834 36 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -5.951 8.080 -5.656 11.518 hybrid contribution 0.042 -0.291 -1.079 1.118 sum -5.909 7.788 -6.734 11.871 Atomic orbital electron populations 1.20888 0.83382 1.05959 1.05060 1.23026 0.96114 0.82130 0.94432 1.82936 1.21416 1.30747 1.74674 1.25107 0.77944 1.01834 0.87346 1.23109 1.04158 0.92623 1.16395 1.18808 0.89812 0.91028 0.75526 1.90745 1.69588 1.37621 1.44044 1.20439 0.93221 0.87767 1.12487 1.86029 1.72030 1.34189 1.32893 1.19046 0.90609 0.91887 0.80569 0.95340 1.22277 1.18514 1.18295 1.03386 0.95706 1.26911 1.02410 0.96991 0.94530 1.70979 1.23097 1.23869 1.37706 0.83192 0.73231 0.76257 0.75317 1.18686 1.22023 1.19574 1.20059 0.93338 0.97836 0.94944 1.20929 0.98756 0.97625 0.97377 1.21389 0.93609 0.98282 1.00427 1.21405 0.99742 0.99952 0.93859 1.21334 0.97310 0.95872 0.98721 1.20913 0.94631 1.01622 0.98289 0.89009 0.85721 0.89620 0.71270 0.81183 0.92864 0.88427 0.83831 0.82573 0.83444 0.87933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.65 9.85 71.24 0.70 -1.95 16 2 C 0.09 3.15 6.97 24.97 0.17 3.33 16 3 O -0.20 -5.14 9.74 5.14 0.05 -5.09 16 4 C 0.14 3.15 11.36 67.04 0.76 3.91 16 5 C -0.34 -11.41 10.03 22.35 0.22 -11.19 16 6 C 0.36 17.25 6.81 24.12 0.16 17.41 16 7 O -0.53 -31.38 17.29 8.47 0.15 -31.23 16 8 C -0.09 -4.27 5.51 22.54 0.12 -4.14 16 9 O -0.33 -17.31 7.63 -80.22 -0.61 -17.93 16 10 C 0.23 12.43 2.44 29.10 0.07 12.50 16 11 H 0.03 1.58 5.44 -2.39 -0.01 1.57 16 12 C -0.59 -36.15 8.10 25.60 0.21 -35.94 16 13 H 0.02 1.65 7.82 -2.91 -0.02 1.63 16 14 C -0.01 -0.49 5.45 84.66 0.46 -0.03 16 15 N -0.92 -55.52 13.65 21.45 0.29 -55.23 16 16 Si 1.10 55.88 29.91 68.60 2.05 57.94 16 17 H -0.26 -12.22 7.11 99.48 0.71 -11.52 16 18 H -0.29 -15.43 7.11 99.48 0.71 -14.72 16 19 H -0.27 -13.14 7.11 99.48 0.71 -12.44 16 20 C -0.06 -2.89 4.99 -19.87 -0.10 -2.99 16 21 C -0.13 -5.54 9.35 22.27 0.21 -5.33 16 22 C -0.12 -3.97 10.05 22.27 0.22 -3.74 16 23 C -0.13 -3.85 10.05 22.27 0.22 -3.62 16 24 C -0.11 -3.72 10.05 22.27 0.22 -3.49 16 25 C -0.14 -5.68 9.68 22.27 0.22 -5.46 16 26 H 0.09 2.47 8.14 -2.39 -0.02 2.45 16 27 H 0.12 2.28 8.14 -2.39 -0.02 2.26 16 28 H 0.09 2.66 7.31 -2.39 -0.02 2.64 16 29 H 0.27 1.93 8.06 -2.91 -0.02 1.91 16 30 H 0.17 4.87 8.06 -2.91 -0.02 4.85 16 31 H 0.26 15.44 6.28 -92.71 -0.58 14.86 16 32 H 0.10 4.53 7.63 -2.91 -0.02 4.50 16 33 H 0.14 3.79 8.06 -2.91 -0.02 3.76 16 34 H 0.16 3.20 8.06 -2.91 -0.02 3.18 16 35 H 0.15 3.72 8.06 -2.91 -0.02 3.69 16 36 H 0.10 4.43 8.06 -2.91 -0.02 4.41 16 Total: -1.00 -86.34 319.32 7.10 -79.24 By element: Atomic # 1 Polarization: 11.76 SS G_CDS: 1.28 Total: 13.05 kcal Atomic # 6 Polarization: -44.63 SS G_CDS: 3.89 Total: -40.75 kcal Atomic # 7 Polarization: -55.52 SS G_CDS: 0.29 Total: -55.23 kcal Atomic # 8 Polarization: -53.83 SS G_CDS: -0.42 Total: -54.25 kcal Atomic # 14 Polarization: 55.88 SS G_CDS: 2.05 Total: 57.94 kcal Total: -86.34 7.10 -79.24 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001227242509.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.854 kcal (2) G-P(sol) polarization free energy of solvation -86.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds