Wall clock time and date at job start Tue Mar 31 2020 06:12:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47350 * 2 1 4 4 C 1.50708 * 109.47426 * 180.02562 * 3 2 1 5 5 C 1.38228 * 120.76124 * 265.02023 * 4 3 2 6 6 N 1.32452 * 119.24278 * 179.97438 * 5 4 3 7 7 C 1.32326 * 120.90356 * 0.02562 * 6 5 4 8 8 O 1.35458 * 119.16485 * 180.02562 * 7 6 5 9 9 N 1.32277 * 121.67195 * 359.71452 * 7 6 5 10 10 C 1.32783 * 120.65910 * 0.57002 * 9 7 6 11 11 O 1.35518 * 120.47561 * 179.71855 * 10 9 7 12 12 C 1.42895 * 116.99799 * 359.72420 * 11 10 9 13 13 H 1.08993 * 109.47318 * 29.99618 * 12 11 10 14 14 C 1.50699 * 109.47044 * 150.00169 * 12 11 10 15 15 H 1.08006 * 119.99785 * 359.97438 * 14 12 11 16 16 C 1.37879 * 119.99908 * 179.97438 * 14 12 11 17 17 N 1.31503 * 120.00171 * 0.02562 * 16 14 12 18 18 Si 1.86803 * 119.99679 * 179.97438 * 16 14 12 19 19 H 1.48500 * 109.47185 * 60.00053 * 18 16 14 20 20 H 1.48503 * 109.47000 * 180.02562 * 18 16 14 21 21 H 1.48506 * 109.47330 * 299.99856 * 18 16 14 22 22 C 1.53006 * 109.47036 * 269.99755 * 12 11 10 23 23 Cl 1.80305 * 109.46895 * 65.00266 * 22 12 11 24 24 H 1.09001 * 109.47356 * 180.02562 * 1 2 3 25 25 H 1.09006 * 109.46720 * 300.00427 * 1 2 3 26 26 H 1.08998 * 109.47196 * 59.99692 * 1 2 3 27 27 H 1.09000 * 109.47097 * 239.99443 * 2 1 3 28 28 H 1.09006 * 109.47311 * 119.99958 * 2 1 3 29 29 H 1.08992 * 109.47608 * 60.00017 * 3 2 1 30 30 H 1.09004 * 109.46898 * 299.99671 * 3 2 1 31 31 H 1.07997 * 120.37830 * 0.02562 * 5 4 3 32 32 H 0.96694 * 114.00295 * 89.99648 * 8 7 6 33 33 H 0.96999 * 120.00204 * 179.97438 * 17 16 14 34 34 H 1.08992 * 109.47046 * 185.00128 * 22 12 11 35 35 H 1.08997 * 109.47395 * 305.00669 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5471 1.4425 -0.0006 5 6 4.2546 1.5454 1.1824 6 7 5.5786 1.5419 1.1469 7 6 6.2274 1.4419 -0.0020 8 8 7.5820 1.4414 0.0027 9 7 5.5868 1.3365 -1.1545 10 6 4.2596 1.3391 -1.1941 11 8 3.6071 1.2366 -2.3775 12 6 4.4107 1.1342 -3.5546 13 1 5.3508 0.6393 -3.3109 14 6 3.6755 0.3310 -4.5964 15 1 2.6929 -0.0623 -4.3809 16 6 4.2572 0.0982 -5.8246 17 7 5.4537 0.5766 -6.0868 18 14 3.3460 -0.8981 -7.1157 19 1 2.0648 -0.2246 -7.4474 20 1 4.1811 -1.0045 -8.3391 21 1 3.0683 -2.2577 -6.5868 22 6 4.6980 2.5348 -4.0995 23 17 5.7040 3.4465 -2.9131 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 1.8933 -0.5139 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 1.6768 1.9563 0.8899 30 1 1.6767 1.9563 -0.8901 31 1 3.7337 1.6269 2.1249 32 1 7.9747 0.5612 0.0803 33 1 5.8630 0.4125 -6.9507 34 1 5.2348 2.4538 -5.0446 35 1 3.7577 3.0623 -4.2596 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001228875676.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:21 Heat of formation + Delta-G solvation = -52.800058 kcal Electronic energy + Delta-G solvation = -21026.249323 eV Core-core repulsion = 17664.879455 eV Total energy + Delta-G solvation = -3361.369868 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 286.087 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.85502 -38.20977 -36.87603 -35.03358 -34.72298 -33.56655 -32.56415 -30.89460 -29.28642 -26.24393 -25.34860 -24.09478 -22.80800 -21.24265 -20.94169 -19.00934 -17.88223 -16.93958 -16.53345 -15.48181 -14.97774 -14.74513 -14.71162 -14.54185 -13.88004 -13.36881 -13.30448 -13.00518 -12.70352 -12.08811 -11.98582 -11.95175 -11.78728 -11.52825 -11.21182 -11.13783 -11.09624 -10.80664 -10.53221 -10.48096 -10.29465 -10.15732 -9.58357 -9.34784 -8.93932 -8.81341 -8.59904 -8.12545 -6.43285 -4.52842 1.22974 1.65478 3.12568 3.18118 3.19917 3.41562 3.50170 3.77853 4.10724 4.22586 4.63619 4.91719 4.99299 5.09318 5.27996 5.30841 5.43006 5.56506 5.74322 5.94298 5.96046 6.00659 6.19943 6.22693 6.31584 6.44831 6.49920 6.54491 6.88712 7.18412 7.24392 7.47151 7.72891 7.78797 8.10534 8.47174 8.61405 9.14147 10.63363 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.013413 B = 0.007167 C = 0.005323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2086.992651 B = 3905.781163 C = 5258.797277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.120 4.120 3 C -0.055 4.055 4 C -0.232 4.232 5 C 0.180 3.820 6 N -0.563 5.563 7 C 0.517 3.483 8 O -0.460 6.460 9 N -0.547 5.547 10 C 0.405 3.595 11 O -0.288 6.288 12 C 0.211 3.789 13 H 0.068 0.932 14 C -0.527 4.527 15 H 0.075 0.925 16 C 0.066 3.934 17 N -0.884 5.884 18 Si 0.916 3.084 19 H -0.272 1.272 20 H -0.283 1.283 21 H -0.272 1.272 22 C -0.034 4.034 23 Cl -0.231 7.231 24 H 0.051 0.949 25 H 0.050 0.950 26 H 0.056 0.944 27 H 0.069 0.931 28 H 0.057 0.943 29 H 0.069 0.931 30 H 0.079 0.921 31 H 0.168 0.832 32 H 0.405 0.595 33 H 0.273 0.727 34 H 0.133 0.867 35 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.759 -0.372 10.073 11.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.157 4.157 3 C -0.093 4.093 4 C -0.238 4.238 5 C 0.018 3.982 6 N -0.294 5.294 7 C 0.212 3.788 8 O -0.263 6.263 9 N -0.288 5.288 10 C 0.217 3.783 11 O -0.190 6.190 12 C 0.156 3.844 13 H 0.086 0.914 14 C -0.565 4.565 15 H 0.093 0.907 16 C -0.138 4.138 17 N -0.520 5.520 18 Si 0.742 3.258 19 H -0.197 1.197 20 H -0.208 1.208 21 H -0.198 1.198 22 C -0.097 4.097 23 Cl -0.205 7.205 24 H 0.070 0.930 25 H 0.069 0.931 26 H 0.075 0.925 27 H 0.088 0.912 28 H 0.075 0.925 29 H 0.088 0.912 30 H 0.098 0.902 31 H 0.185 0.815 32 H 0.264 0.736 33 H 0.083 0.917 34 H 0.151 0.849 35 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -3.815 0.280 9.770 10.492 hybrid contribution -0.712 -0.788 -0.866 1.370 sum -4.527 -0.508 8.904 10.002 Atomic orbital electron populations 1.21750 0.95851 1.01402 1.01653 1.21505 0.95522 0.96310 1.02376 1.20242 0.88647 0.97513 1.02943 1.20716 0.98654 1.12260 0.92205 1.22555 0.87989 0.90512 0.97155 1.67891 1.10268 1.21230 1.29965 1.19855 0.85482 0.90456 0.82983 1.84698 1.12521 1.34192 1.94864 1.67807 1.09453 1.20845 1.30646 1.19824 0.85898 0.84793 0.87794 1.86321 1.36652 1.83177 1.12893 1.20585 0.93185 0.91957 0.78624 0.91437 1.20940 1.04536 1.33570 0.97457 0.90704 1.24958 0.94973 0.95630 0.98244 1.69813 1.14157 1.44051 1.23997 0.86250 0.79437 0.80322 0.79778 1.19729 1.20804 1.19757 1.25584 0.95221 0.93457 0.95429 1.98653 1.75853 1.79543 1.66419 0.92967 0.93076 0.92470 0.91206 0.92452 0.91245 0.90210 0.81452 0.73647 0.91723 0.84936 0.91293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.60 9.91 37.16 0.37 -1.23 16 2 C -0.12 -1.51 5.92 -26.73 -0.16 -1.67 16 3 C -0.05 -0.73 5.14 -27.88 -0.14 -0.88 16 4 C -0.23 -3.77 5.18 -104.20 -0.54 -4.31 16 5 C 0.18 2.65 10.97 -17.29 -0.19 2.46 16 6 N -0.56 -9.64 10.46 -14.80 -0.15 -9.80 16 7 C 0.52 9.72 8.71 -91.28 -0.80 8.92 16 8 O -0.46 -7.71 13.64 -18.06 -0.25 -7.95 16 9 N -0.55 -11.45 6.60 -14.79 -0.10 -11.55 16 10 C 0.40 8.17 6.63 -16.71 -0.11 8.06 16 11 O -0.29 -6.41 9.01 -18.25 -0.16 -6.58 16 12 C 0.21 5.18 2.26 -27.88 -0.06 5.11 16 13 H 0.07 1.83 7.01 -51.93 -0.36 1.47 16 14 C -0.53 -13.54 8.89 -34.44 -0.31 -13.85 16 15 H 0.07 1.90 7.81 -52.48 -0.41 1.49 16 16 C 0.07 1.67 5.29 -17.82 -0.09 1.58 16 17 N -0.88 -23.24 11.29 55.43 0.63 -22.62 16 18 Si 0.92 19.71 29.54 -169.99 -5.02 14.69 16 19 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 20 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 21 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 22 C -0.03 -0.80 6.17 37.16 0.23 -0.57 16 23 Cl -0.23 -5.18 25.94 -51.86 -1.35 -6.52 16 24 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 26 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 27 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 28 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.07 0.74 8.07 -51.93 -0.42 0.32 16 30 H 0.08 1.18 7.78 -51.93 -0.40 0.78 16 31 H 0.17 1.76 8.06 -52.49 -0.42 1.33 16 32 H 0.41 4.54 9.06 45.56 0.41 4.95 16 33 H 0.27 6.81 8.31 -40.82 -0.34 6.47 16 34 H 0.13 3.35 5.95 -51.93 -0.31 3.05 16 35 H 0.07 1.55 8.14 -51.93 -0.42 1.13 16 LS Contribution 313.76 15.07 4.73 4.73 Total: -1.00 -29.12 313.76 -7.06 -36.19 By element: Atomic # 1 Polarization: 9.38 SS G_CDS: -3.59 Total: 5.79 kcal Atomic # 6 Polarization: 5.42 SS G_CDS: -1.80 Total: 3.62 kcal Atomic # 7 Polarization: -44.34 SS G_CDS: 0.37 Total: -43.96 kcal Atomic # 8 Polarization: -14.12 SS G_CDS: -0.41 Total: -14.53 kcal Atomic # 14 Polarization: 19.71 SS G_CDS: -5.02 Total: 14.69 kcal Atomic # 17 Polarization: -5.18 SS G_CDS: -1.35 Total: -6.52 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -29.12 -7.06 -36.19 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228875676.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.612 kcal (2) G-P(sol) polarization free energy of solvation -29.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds