Wall clock time and date at job start Tue Mar 31 2020 06:12:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47350 * 2 1 4 4 C 1.50708 * 109.47426 * 180.02562 * 3 2 1 5 5 C 1.38228 * 120.76124 * 265.02023 * 4 3 2 6 6 N 1.32452 * 119.24278 * 179.97438 * 5 4 3 7 7 C 1.32326 * 120.90356 * 0.02562 * 6 5 4 8 8 O 1.35458 * 119.16485 * 180.02562 * 7 6 5 9 9 N 1.32277 * 121.67195 * 359.71452 * 7 6 5 10 10 C 1.32783 * 120.65910 * 0.57002 * 9 7 6 11 11 O 1.35518 * 120.47561 * 179.71855 * 10 9 7 12 12 C 1.42895 * 116.99799 * 359.72420 * 11 10 9 13 13 H 1.08993 * 109.47318 * 29.99618 * 12 11 10 14 14 C 1.50699 * 109.47044 * 150.00169 * 12 11 10 15 15 H 1.08006 * 119.99785 * 359.97438 * 14 12 11 16 16 C 1.37879 * 119.99908 * 179.97438 * 14 12 11 17 17 N 1.31503 * 120.00171 * 0.02562 * 16 14 12 18 18 Si 1.86803 * 119.99679 * 179.97438 * 16 14 12 19 19 H 1.48500 * 109.47185 * 60.00053 * 18 16 14 20 20 H 1.48503 * 109.47000 * 180.02562 * 18 16 14 21 21 H 1.48506 * 109.47330 * 299.99856 * 18 16 14 22 22 C 1.53006 * 109.47036 * 269.99755 * 12 11 10 23 23 Cl 1.80305 * 109.46895 * 65.00266 * 22 12 11 24 24 H 1.09001 * 109.47356 * 180.02562 * 1 2 3 25 25 H 1.09006 * 109.46720 * 300.00427 * 1 2 3 26 26 H 1.08998 * 109.47196 * 59.99692 * 1 2 3 27 27 H 1.09000 * 109.47097 * 239.99443 * 2 1 3 28 28 H 1.09006 * 109.47311 * 119.99958 * 2 1 3 29 29 H 1.08992 * 109.47608 * 60.00017 * 3 2 1 30 30 H 1.09004 * 109.46898 * 299.99671 * 3 2 1 31 31 H 1.07997 * 120.37830 * 0.02562 * 5 4 3 32 32 H 0.96694 * 114.00295 * 89.99648 * 8 7 6 33 33 H 0.96999 * 120.00204 * 179.97438 * 17 16 14 34 34 H 1.08992 * 109.47046 * 185.00128 * 22 12 11 35 35 H 1.08997 * 109.47395 * 305.00669 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5471 1.4425 -0.0006 5 6 4.2546 1.5454 1.1824 6 7 5.5786 1.5419 1.1469 7 6 6.2274 1.4419 -0.0020 8 8 7.5820 1.4414 0.0027 9 7 5.5868 1.3365 -1.1545 10 6 4.2596 1.3391 -1.1941 11 8 3.6071 1.2366 -2.3775 12 6 4.4107 1.1342 -3.5546 13 1 5.3508 0.6393 -3.3109 14 6 3.6755 0.3310 -4.5964 15 1 2.6929 -0.0623 -4.3809 16 6 4.2572 0.0982 -5.8246 17 7 5.4537 0.5766 -6.0868 18 14 3.3460 -0.8981 -7.1157 19 1 2.0648 -0.2246 -7.4474 20 1 4.1811 -1.0045 -8.3391 21 1 3.0683 -2.2577 -6.5868 22 6 4.6980 2.5348 -4.0995 23 17 5.7040 3.4465 -2.9131 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 1.8933 -0.5139 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 1.6768 1.9563 0.8899 30 1 1.6767 1.9563 -0.8901 31 1 3.7337 1.6269 2.1249 32 1 7.9747 0.5612 0.0803 33 1 5.8630 0.4125 -6.9507 34 1 5.2348 2.4538 -5.0446 35 1 3.7577 3.0623 -4.2596 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001228875676.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:21 Heat of formation + Delta-G solvation = -74.518648 kcal Electronic energy + Delta-G solvation = -21027.191111 eV Core-core repulsion = 17664.879455 eV Total energy + Delta-G solvation = -3362.311657 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 286.087 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.25222 -39.77719 -38.23943 -36.59081 -36.10736 -35.43339 -34.03555 -32.19404 -31.04949 -27.41188 -27.26364 -25.56519 -24.06076 -22.96721 -22.02425 -20.42132 -19.44042 -18.58240 -18.21582 -16.98295 -16.75144 -16.24716 -15.89644 -15.61521 -15.46046 -14.83775 -14.76385 -14.51753 -13.94608 -13.85797 -13.64799 -13.08116 -13.03321 -12.94294 -12.88457 -12.73648 -12.57406 -12.19827 -12.07821 -11.85857 -11.60951 -11.48117 -11.39889 -11.18930 -10.67095 -10.57829 -10.08826 -9.58264 -8.37421 -6.55184 -0.09736 0.27599 1.40382 1.42378 1.52135 1.62986 2.04465 2.24137 2.47596 2.75318 2.96660 3.31930 3.81551 3.92988 4.10703 4.28555 4.32088 4.33003 4.40388 4.45407 4.72691 4.90197 4.96021 5.01646 5.08684 5.21798 5.25689 5.39351 5.47191 5.50739 5.54010 5.75388 5.96764 6.30743 6.58021 6.68523 7.10225 7.17432 8.69088 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.013413 B = 0.007167 C = 0.005323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2086.992651 B = 3905.781163 C = 5258.797277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.116 4.116 3 C -0.052 4.052 4 C -0.225 4.225 5 C 0.191 3.809 6 N -0.561 5.561 7 C 0.505 3.495 8 O -0.470 6.470 9 N -0.580 5.580 10 C 0.371 3.629 11 O -0.299 6.299 12 C 0.223 3.777 13 H 0.034 0.966 14 C -0.549 4.549 15 H 0.071 0.929 16 C 0.025 3.975 17 N -0.909 5.909 18 Si 0.979 3.021 19 H -0.264 1.264 20 H -0.277 1.277 21 H -0.269 1.269 22 C -0.024 4.024 23 Cl -0.220 7.220 24 H 0.057 0.943 25 H 0.074 0.926 26 H 0.046 0.954 27 H 0.032 0.968 28 H 0.073 0.927 29 H 0.110 0.890 30 H 0.060 0.940 31 H 0.222 0.778 32 H 0.425 0.575 33 H 0.275 0.725 34 H 0.114 0.886 35 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.245 -0.472 11.774 13.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.154 4.154 3 C -0.090 4.090 4 C -0.231 4.231 5 C 0.029 3.971 6 N -0.291 5.291 7 C 0.200 3.800 8 O -0.275 6.275 9 N -0.321 5.321 10 C 0.185 3.815 11 O -0.203 6.203 12 C 0.167 3.833 13 H 0.051 0.949 14 C -0.586 4.586 15 H 0.089 0.911 16 C -0.176 4.176 17 N -0.546 5.546 18 Si 0.802 3.198 19 H -0.188 1.188 20 H -0.202 1.202 21 H -0.194 1.194 22 C -0.087 4.087 23 Cl -0.194 7.194 24 H 0.076 0.924 25 H 0.093 0.907 26 H 0.065 0.935 27 H 0.051 0.949 28 H 0.092 0.908 29 H 0.128 0.872 30 H 0.079 0.921 31 H 0.238 0.762 32 H 0.287 0.713 33 H 0.085 0.915 34 H 0.132 0.868 35 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -5.283 0.174 11.501 12.657 hybrid contribution -0.194 -0.744 -1.244 1.463 sum -5.477 -0.570 10.256 11.641 Atomic orbital electron populations 1.21723 0.94159 1.02049 1.02331 1.21462 0.96962 0.95566 1.01378 1.20338 0.86553 0.98155 1.03983 1.21119 1.00218 1.10670 0.91075 1.23426 0.87146 0.88062 0.98445 1.68027 1.11466 1.20801 1.28854 1.20040 0.86052 0.90907 0.83006 1.84644 1.11923 1.36140 1.94840 1.67683 1.10308 1.21875 1.32201 1.20268 0.86342 0.86856 0.88052 1.86266 1.36498 1.84317 1.13176 1.20157 0.91850 0.91811 0.79464 0.94864 1.21193 1.04646 1.34406 0.98370 0.91060 1.25769 0.95588 0.96315 0.99924 1.69922 1.15368 1.44819 1.24524 0.85279 0.78493 0.78830 0.77198 1.18831 1.20242 1.19424 1.25315 0.95201 0.93467 0.94742 1.98645 1.75617 1.79179 1.65993 0.92406 0.90678 0.93483 0.94861 0.90806 0.87179 0.92107 0.76191 0.71335 0.91540 0.86810 0.90737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.77 9.91 71.98 0.71 -2.05 16 2 C -0.12 -2.73 5.92 30.59 0.18 -2.55 16 3 C -0.05 -1.27 5.14 29.85 0.15 -1.11 16 4 C -0.23 -6.95 5.18 -19.59 -0.10 -7.05 16 5 C 0.19 5.01 10.97 84.60 0.93 5.94 16 6 N -0.56 -18.07 10.46 -313.68 -3.28 -21.35 16 7 C 0.50 18.76 8.71 180.58 1.57 20.34 16 8 O -0.47 -15.64 13.64 -87.56 -1.19 -16.83 16 9 N -0.58 -24.69 6.60 -426.36 -2.81 -27.50 16 10 C 0.37 15.14 6.63 84.83 0.56 15.70 16 11 O -0.30 -13.75 9.01 -88.21 -0.79 -14.54 16 12 C 0.22 11.35 2.26 29.85 0.07 11.41 16 13 H 0.03 1.91 7.01 -2.39 -0.02 1.89 16 14 C -0.55 -29.01 8.89 25.60 0.23 -28.78 16 15 H 0.07 3.72 7.81 -2.91 -0.02 3.69 16 16 C 0.03 1.31 5.29 84.66 0.45 1.76 16 17 N -0.91 -48.94 11.29 21.45 0.24 -48.70 16 18 Si 0.98 40.50 29.54 68.60 2.03 42.53 16 19 H -0.26 -10.50 7.11 99.48 0.71 -9.79 16 20 H -0.28 -11.16 7.11 99.48 0.71 -10.45 16 21 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 22 C -0.02 -1.17 6.17 71.98 0.44 -0.73 16 23 Cl -0.22 -10.05 25.94 -2.72 -0.07 -10.12 16 24 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 25 H 0.07 1.08 8.14 -2.38 -0.02 1.06 16 26 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 27 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 28 H 0.07 1.48 8.14 -2.38 -0.02 1.46 16 29 H 0.11 1.81 8.07 -2.39 -0.02 1.79 16 30 H 0.06 1.74 7.78 -2.38 -0.02 1.72 16 31 H 0.22 3.34 8.06 -2.91 -0.02 3.31 16 32 H 0.42 9.45 9.06 -74.06 -0.67 8.78 16 33 H 0.28 13.96 8.31 -92.71 -0.77 13.19 16 34 H 0.11 5.97 5.95 -2.39 -0.01 5.96 16 35 H 0.07 3.45 8.14 -2.39 -0.02 3.43 16 Total: -1.00 -64.62 313.76 -0.24 -64.86 By element: Atomic # 1 Polarization: 18.34 SS G_CDS: 0.45 Total: 18.79 kcal Atomic # 6 Polarization: 7.67 SS G_CDS: 5.20 Total: 12.87 kcal Atomic # 7 Polarization: -91.70 SS G_CDS: -5.85 Total: -97.55 kcal Atomic # 8 Polarization: -29.39 SS G_CDS: -1.99 Total: -31.37 kcal Atomic # 14 Polarization: 40.50 SS G_CDS: 2.03 Total: 42.53 kcal Atomic # 17 Polarization: -10.05 SS G_CDS: -0.07 Total: -10.12 kcal Total: -64.62 -0.24 -64.86 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228875676.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.661 kcal (2) G-P(sol) polarization free energy of solvation -64.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds