Wall clock time and date at job start Tue Mar 31 2020 06:44:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52994 * 109.47142 * 2 1 4 4 C 1.52999 * 109.47364 * 180.02562 * 3 2 1 5 5 N 1.46505 * 109.47467 * 180.02562 * 4 3 2 6 6 C 1.36935 * 119.99639 * 269.99922 * 5 4 3 7 7 H 1.08003 * 120.00555 * 13.65849 * 6 5 4 8 8 C 1.38820 * 119.99831 * 193.65341 * 6 5 4 9 9 N 1.31618 * 119.99988 * 315.30883 * 8 6 5 10 10 Si 1.86792 * 119.99773 * 135.30452 * 8 6 5 11 11 H 1.48502 * 109.47026 * 90.00285 * 10 8 6 12 12 H 1.48506 * 109.47266 * 210.00173 * 10 8 6 13 13 H 1.48499 * 109.47715 * 330.00218 * 10 8 6 14 14 C 1.46499 * 120.00021 * 89.99866 * 5 4 3 15 15 C 1.50701 * 109.47070 * 97.05795 * 14 5 4 16 16 C 1.38533 * 120.42104 * 102.31882 * 15 14 5 17 17 C 1.38809 * 118.43953 * 180.02562 * 16 15 14 18 18 Cl 1.73595 * 120.40205 * 179.97438 * 17 16 15 19 19 C 1.38262 * 119.19698 * 0.02562 * 17 16 15 20 20 N 1.31905 * 120.77617 * 359.97438 * 19 17 16 21 21 C 1.32046 * 121.70407 * 0.02562 * 20 19 17 22 22 F 1.35098 * 119.63780 * 179.97438 * 21 20 19 23 23 H 1.09000 * 109.47001 * 299.99295 * 1 2 3 24 24 H 1.08996 * 109.47241 * 59.99759 * 1 2 3 25 25 H 1.09001 * 109.47215 * 179.97438 * 1 2 3 26 26 H 1.09008 * 109.46709 * 240.00516 * 2 1 3 27 27 H 1.09000 * 109.47691 * 120.00402 * 2 1 3 28 28 H 1.09004 * 109.47316 * 60.00387 * 3 2 1 29 29 H 1.09004 * 109.47428 * 300.00039 * 3 2 1 30 30 H 1.09000 * 109.47146 * 60.00480 * 4 3 2 31 31 H 1.09000 * 109.47324 * 300.00313 * 4 3 2 32 32 H 0.96997 * 120.00218 * 180.02562 * 9 8 6 33 33 H 1.08998 * 109.46905 * 337.06232 * 14 5 4 34 34 H 1.08999 * 109.46948 * 217.05894 * 14 5 4 35 35 H 1.07995 * 120.78154 * 0.04504 * 16 15 14 36 36 H 1.07999 * 119.61417 * 179.72588 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5699 1.4425 -0.0006 5 7 4.0583 2.8237 0.0000 6 6 4.2861 3.4699 -1.1857 7 1 3.9051 3.0566 -2.1079 8 6 5.0066 4.6564 -1.2023 9 7 4.7555 5.5913 -0.3105 10 14 6.3323 4.9259 -2.4902 11 1 5.7337 5.5622 -3.6911 12 1 7.3885 5.8105 -1.9359 13 1 6.9288 3.6194 -2.8678 14 6 4.3030 3.5136 1.2690 15 6 5.7667 3.4227 1.6161 16 6 6.6046 4.5070 1.4124 17 6 7.9457 4.3778 1.7461 18 17 9.0410 5.7040 1.5114 19 6 8.3989 3.1798 2.2667 20 7 7.5733 2.1672 2.4476 21 6 6.2916 2.2536 2.1418 22 9 5.4834 1.1901 2.3439 23 1 -0.3633 0.5137 0.8901 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3634 -1.0277 -0.0005 26 1 1.8933 -0.5138 -0.8901 27 1 1.8934 -0.5139 0.8899 28 1 1.6767 1.9563 0.8900 29 1 1.6766 1.9563 -0.8900 30 1 3.9329 0.9289 -0.8909 31 1 3.9337 0.9285 0.8891 32 1 5.2587 6.4204 -0.3223 33 1 3.7131 3.0452 2.0568 34 1 4.0164 4.5610 1.1743 35 1 6.2232 5.4311 1.0040 36 1 9.4420 3.0705 2.5245 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001231994064.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:16 Heat of formation + Delta-G solvation = 5.282290 kcal Electronic energy + Delta-G solvation = -21083.761528 eV Core-core repulsion = 17737.283090 eV Total energy + Delta-G solvation = -3346.478439 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 286.094 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -48.50287 -39.61386 -36.64553 -36.23293 -34.45138 -32.08665 -31.64219 -30.40401 -28.05694 -26.09854 -24.11487 -23.10982 -22.26541 -20.88636 -20.05411 -17.69482 -17.22959 -16.69841 -15.74333 -15.54719 -14.96006 -14.87639 -13.99446 -13.88966 -13.58156 -13.31560 -13.27171 -13.16038 -12.68199 -12.32862 -12.18833 -11.99597 -11.49174 -11.38463 -11.07236 -10.92160 -10.84678 -10.73208 -10.56032 -10.48649 -10.19988 -10.00320 -9.82496 -9.34038 -9.20383 -8.49074 -8.11707 -7.09228 -6.15179 -3.23351 1.25548 1.62737 2.36459 3.29037 3.43775 3.50896 3.92611 4.06957 4.38793 4.90715 5.01121 5.18263 5.33213 5.35067 5.37921 5.54134 5.59419 5.77691 5.91042 6.03524 6.12395 6.23066 6.28014 6.31518 6.35646 6.52357 6.55536 6.67047 6.85900 6.88036 7.01033 7.11600 7.41283 7.70824 7.93888 8.10895 8.93632 9.64945 10.11308 10.85888 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.016833 B = 0.006711 C = 0.005215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1663.005251 B = 4171.197413 C = 5367.751611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.123 4.123 3 C -0.137 4.137 4 C 0.142 3.858 5 N -0.585 5.585 6 C -0.259 4.259 7 H 0.083 0.917 8 C 0.019 3.981 9 N -0.866 5.866 10 Si 0.845 3.155 11 H -0.287 1.287 12 H -0.280 1.280 13 H -0.281 1.281 14 C 0.170 3.830 15 C -0.117 4.117 16 C -0.028 4.028 17 C -0.111 4.111 18 Cl -0.068 7.068 19 C 0.122 3.878 20 N -0.513 5.513 21 C 0.297 3.703 22 F -0.112 7.112 23 H 0.050 0.950 24 H 0.051 0.949 25 H 0.046 0.954 26 H 0.056 0.944 27 H 0.055 0.945 28 H 0.053 0.947 29 H 0.059 0.941 30 H 0.047 0.953 31 H 0.050 0.950 32 H 0.258 0.742 33 H 0.038 0.962 34 H 0.131 0.869 35 H 0.181 0.819 36 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.914 -3.423 4.931 6.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.161 4.161 3 C -0.177 4.177 4 C 0.016 3.984 5 N -0.303 5.303 6 C -0.386 4.386 7 H 0.101 0.899 8 C -0.179 4.179 9 N -0.511 5.511 10 Si 0.672 3.328 11 H -0.214 1.214 12 H -0.205 1.205 13 H -0.207 1.207 14 C 0.043 3.957 15 C -0.123 4.123 16 C -0.054 4.054 17 C -0.141 4.141 18 Cl -0.040 7.040 19 C -0.036 4.036 20 N -0.227 5.227 21 C 0.144 3.856 22 F -0.091 7.091 23 H 0.070 0.930 24 H 0.070 0.930 25 H 0.065 0.935 26 H 0.075 0.925 27 H 0.074 0.926 28 H 0.072 0.928 29 H 0.078 0.922 30 H 0.065 0.935 31 H 0.068 0.932 32 H 0.070 0.930 33 H 0.056 0.944 34 H 0.148 0.852 35 H 0.197 0.803 36 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 1.294 -3.984 5.251 6.717 hybrid contribution 0.617 0.741 -1.129 1.485 sum 1.911 -3.243 4.122 5.582 Atomic orbital electron populations 1.21760 0.96649 1.00640 1.01599 1.21499 0.95146 0.98174 1.01302 1.22219 0.99024 0.94696 1.01801 1.21011 0.91568 0.85895 0.99917 1.44168 1.75153 1.09039 1.01948 1.19112 1.28208 1.05561 0.85677 0.89873 1.24518 1.00592 0.95597 0.97235 1.70184 1.38055 1.04243 1.38635 0.87127 0.85088 0.77993 0.82585 1.21391 1.20526 1.20731 1.20307 0.85852 1.03017 0.86529 1.21887 1.03205 0.90739 0.96484 1.22514 0.89342 1.02164 0.91368 1.22175 0.93146 0.91403 1.07331 1.98338 1.63047 1.46778 1.95802 1.22151 0.98820 0.86339 0.96315 1.66976 1.03396 1.31861 1.20494 1.18227 0.85848 0.83988 0.97563 1.91526 1.70145 1.55020 1.92457 0.93048 0.92990 0.93532 0.92541 0.92579 0.92845 0.92191 0.93455 0.93184 0.93025 0.94414 0.85215 0.80250 0.82037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.84 9.91 37.16 0.37 -1.47 16 2 C -0.12 -1.73 5.93 -26.74 -0.16 -1.89 16 3 C -0.14 -2.37 5.54 -26.73 -0.15 -2.52 16 4 C 0.14 2.79 5.64 -4.04 -0.02 2.77 16 5 N -0.58 -13.30 2.53 -174.60 -0.44 -13.74 16 6 C -0.26 -6.51 9.53 -15.06 -0.14 -6.65 16 7 H 0.08 2.12 8.06 -52.48 -0.42 1.70 16 8 C 0.02 0.47 3.91 -17.43 -0.07 0.41 16 9 N -0.87 -21.29 8.21 55.49 0.46 -20.83 16 10 Si 0.84 20.14 29.69 -169.99 -5.05 15.09 16 11 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 12 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 13 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 14 C 0.17 3.69 5.03 -5.19 -0.03 3.67 16 15 C -0.12 -2.44 5.19 -104.41 -0.54 -2.99 16 16 C -0.03 -0.56 8.38 -39.26 -0.33 -0.89 16 17 C -0.11 -2.02 6.34 -39.36 -0.25 -2.27 16 18 Cl -0.07 -1.10 28.99 -51.86 -1.50 -2.60 16 19 C 0.12 2.10 10.98 -17.51 -0.19 1.91 16 20 N -0.51 -9.92 10.37 -13.57 -0.14 -10.06 16 21 C 0.30 6.04 8.36 -17.36 -0.15 5.90 16 22 F -0.11 -2.22 14.61 2.25 0.03 -2.19 16 23 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 24 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.06 0.78 8.14 -51.92 -0.42 0.35 16 27 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 30 H 0.05 0.94 8.04 -51.93 -0.42 0.53 16 31 H 0.05 0.95 5.83 -51.93 -0.30 0.65 16 32 H 0.26 6.14 7.74 -40.82 -0.32 5.83 16 33 H 0.04 0.76 7.90 -51.93 -0.41 0.35 16 34 H 0.13 3.07 5.43 -51.93 -0.28 2.79 16 35 H 0.18 3.89 4.91 -52.49 -0.26 3.64 16 36 H 0.16 2.21 8.06 -52.49 -0.42 1.79 16 LS Contribution 313.43 15.07 4.72 4.72 Total: -1.00 -25.14 313.43 -8.17 -33.30 By element: Atomic # 1 Polarization: 4.93 SS G_CDS: -4.59 Total: 0.35 kcal Atomic # 6 Polarization: -2.38 SS G_CDS: -1.66 Total: -4.04 kcal Atomic # 7 Polarization: -44.50 SS G_CDS: -0.13 Total: -44.63 kcal Atomic # 9 Polarization: -2.22 SS G_CDS: 0.03 Total: -2.19 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -5.05 Total: 15.09 kcal Atomic # 17 Polarization: -1.10 SS G_CDS: -1.50 Total: -2.60 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -25.14 -8.17 -33.30 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001231994064.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.587 kcal (2) G-P(sol) polarization free energy of solvation -25.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.305 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds