Wall clock time and date at job start Tue Mar 31 2020 06:44:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52994 * 109.47142 * 2 1 4 4 C 1.52999 * 109.47364 * 180.02562 * 3 2 1 5 5 N 1.46505 * 109.47467 * 180.02562 * 4 3 2 6 6 C 1.36935 * 119.99639 * 269.99922 * 5 4 3 7 7 H 1.08003 * 120.00555 * 13.65849 * 6 5 4 8 8 C 1.38820 * 119.99831 * 193.65341 * 6 5 4 9 9 N 1.31618 * 119.99988 * 315.30883 * 8 6 5 10 10 Si 1.86792 * 119.99773 * 135.30452 * 8 6 5 11 11 H 1.48502 * 109.47026 * 90.00285 * 10 8 6 12 12 H 1.48506 * 109.47266 * 210.00173 * 10 8 6 13 13 H 1.48499 * 109.47715 * 330.00218 * 10 8 6 14 14 C 1.46499 * 120.00021 * 89.99866 * 5 4 3 15 15 C 1.50701 * 109.47070 * 97.05795 * 14 5 4 16 16 C 1.38533 * 120.42104 * 102.31882 * 15 14 5 17 17 C 1.38809 * 118.43953 * 180.02562 * 16 15 14 18 18 Cl 1.73595 * 120.40205 * 179.97438 * 17 16 15 19 19 C 1.38262 * 119.19698 * 0.02562 * 17 16 15 20 20 N 1.31905 * 120.77617 * 359.97438 * 19 17 16 21 21 C 1.32046 * 121.70407 * 0.02562 * 20 19 17 22 22 F 1.35098 * 119.63780 * 179.97438 * 21 20 19 23 23 H 1.09000 * 109.47001 * 299.99295 * 1 2 3 24 24 H 1.08996 * 109.47241 * 59.99759 * 1 2 3 25 25 H 1.09001 * 109.47215 * 179.97438 * 1 2 3 26 26 H 1.09008 * 109.46709 * 240.00516 * 2 1 3 27 27 H 1.09000 * 109.47691 * 120.00402 * 2 1 3 28 28 H 1.09004 * 109.47316 * 60.00387 * 3 2 1 29 29 H 1.09004 * 109.47428 * 300.00039 * 3 2 1 30 30 H 1.09000 * 109.47146 * 60.00480 * 4 3 2 31 31 H 1.09000 * 109.47324 * 300.00313 * 4 3 2 32 32 H 0.96997 * 120.00218 * 180.02562 * 9 8 6 33 33 H 1.08998 * 109.46905 * 337.06232 * 14 5 4 34 34 H 1.08999 * 109.46948 * 217.05894 * 14 5 4 35 35 H 1.07995 * 120.78154 * 0.04504 * 16 15 14 36 36 H 1.07999 * 119.61417 * 179.72588 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5699 1.4425 -0.0006 5 7 4.0583 2.8237 0.0000 6 6 4.2861 3.4699 -1.1857 7 1 3.9051 3.0566 -2.1079 8 6 5.0066 4.6564 -1.2023 9 7 4.7555 5.5913 -0.3105 10 14 6.3323 4.9259 -2.4902 11 1 5.7337 5.5622 -3.6911 12 1 7.3885 5.8105 -1.9359 13 1 6.9288 3.6194 -2.8678 14 6 4.3030 3.5136 1.2690 15 6 5.7667 3.4227 1.6161 16 6 6.6046 4.5070 1.4124 17 6 7.9457 4.3778 1.7461 18 17 9.0410 5.7040 1.5114 19 6 8.3989 3.1798 2.2667 20 7 7.5733 2.1672 2.4476 21 6 6.2916 2.2536 2.1418 22 9 5.4834 1.1901 2.3439 23 1 -0.3633 0.5137 0.8901 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3634 -1.0277 -0.0005 26 1 1.8933 -0.5138 -0.8901 27 1 1.8934 -0.5139 0.8899 28 1 1.6767 1.9563 0.8900 29 1 1.6766 1.9563 -0.8900 30 1 3.9329 0.9289 -0.8909 31 1 3.9337 0.9285 0.8891 32 1 5.2587 6.4204 -0.3223 33 1 3.7131 3.0452 2.0568 34 1 4.0164 4.5610 1.1743 35 1 6.2232 5.4311 1.0040 36 1 9.4420 3.0705 2.5245 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001231994064.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:15 Heat of formation + Delta-G solvation = -5.475078 kcal Electronic energy + Delta-G solvation = -21084.228003 eV Core-core repulsion = 17737.283090 eV Total energy + Delta-G solvation = -3346.944913 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 286.094 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -50.05173 -41.12315 -38.26767 -37.62114 -35.85123 -33.64149 -33.40243 -31.88741 -29.49555 -27.81149 -25.69008 -24.64033 -23.75370 -22.27835 -21.60154 -19.30975 -18.86307 -18.30796 -17.26429 -17.09561 -16.71982 -16.27955 -15.63903 -15.43095 -15.14017 -14.87190 -14.69928 -14.60214 -14.23570 -13.78003 -13.61042 -13.38987 -13.18024 -12.85225 -12.74697 -12.49602 -12.42302 -12.20495 -12.03414 -11.98221 -11.77567 -11.66264 -11.28876 -10.86430 -10.81856 -10.22216 -9.68898 -8.88902 -8.04703 -5.13464 -0.25090 0.10091 0.95013 1.36657 1.49712 1.56176 2.38649 2.50869 2.57891 2.98984 3.58210 3.66083 3.83755 3.85207 4.14263 4.17588 4.29970 4.42315 4.56684 4.59074 4.71133 4.88921 4.97365 5.04273 5.06324 5.09318 5.19321 5.25661 5.39933 5.49230 5.50340 5.60466 5.66697 5.75841 6.26718 6.45575 7.07055 7.81743 8.26256 8.94412 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.016833 B = 0.006711 C = 0.005215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1663.005251 B = 4171.197413 C = 5367.751611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.118 4.118 3 C -0.126 4.126 4 C 0.141 3.859 5 N -0.596 5.596 6 C -0.274 4.274 7 H 0.072 0.928 8 C 0.001 3.999 9 N -0.868 5.868 10 Si 0.876 3.124 11 H -0.290 1.290 12 H -0.276 1.276 13 H -0.295 1.295 14 C 0.177 3.823 15 C -0.132 4.132 16 C -0.039 4.039 17 C -0.112 4.112 18 Cl -0.047 7.047 19 C 0.134 3.866 20 N -0.519 5.519 21 C 0.289 3.711 22 F -0.113 7.113 23 H 0.052 0.948 24 H 0.048 0.952 25 H 0.066 0.934 26 H 0.059 0.941 27 H 0.064 0.936 28 H 0.047 0.953 29 H 0.040 0.960 30 H 0.040 0.960 31 H 0.056 0.944 32 H 0.260 0.740 33 H 0.047 0.953 34 H 0.109 0.891 35 H 0.167 0.833 36 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.734 -4.053 5.614 7.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.156 4.156 3 C -0.166 4.166 4 C 0.016 3.984 5 N -0.315 5.315 6 C -0.402 4.402 7 H 0.089 0.911 8 C -0.198 4.198 9 N -0.514 5.514 10 Si 0.705 3.295 11 H -0.217 1.217 12 H -0.201 1.201 13 H -0.222 1.222 14 C 0.050 3.950 15 C -0.138 4.138 16 C -0.065 4.065 17 C -0.141 4.141 18 Cl -0.018 7.018 19 C -0.024 4.024 20 N -0.233 5.233 21 C 0.136 3.864 22 F -0.092 7.092 23 H 0.071 0.929 24 H 0.067 0.933 25 H 0.085 0.915 26 H 0.078 0.922 27 H 0.083 0.917 28 H 0.066 0.934 29 H 0.059 0.941 30 H 0.058 0.942 31 H 0.075 0.925 32 H 0.072 0.928 33 H 0.066 0.934 34 H 0.127 0.873 35 H 0.184 0.816 36 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges 2.104 -4.614 5.946 7.815 hybrid contribution 0.430 0.979 -1.325 1.703 sum 2.534 -3.635 4.621 6.402 Atomic orbital electron populations 1.21732 0.95096 1.01979 1.01559 1.21456 0.96484 0.95745 1.01926 1.22050 0.97175 0.96798 1.00551 1.21111 0.93014 0.84485 0.99773 1.44282 1.75717 1.09931 1.01585 1.19155 1.28825 1.05863 0.86310 0.91051 1.24745 1.01132 0.95735 0.98145 1.70230 1.38108 1.04219 1.38810 0.86649 0.84205 0.77007 0.81679 1.21740 1.20140 1.22221 1.20122 0.86797 1.01743 0.86383 1.21745 1.02754 0.91512 0.97807 1.22399 0.90541 1.01522 0.92081 1.22234 0.92664 0.92514 1.06727 1.98346 1.62003 1.45818 1.95653 1.22793 1.00108 0.85162 0.94304 1.67086 1.02968 1.32596 1.20672 1.18244 0.86373 0.83815 0.97944 1.91514 1.70282 1.54897 1.92474 0.92883 0.93299 0.91499 0.92175 0.91686 0.93379 0.94067 0.94197 0.92542 0.92846 0.93447 0.87326 0.81595 0.78043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.35 9.91 71.98 0.71 -2.63 16 2 C -0.12 -3.16 5.93 30.59 0.18 -2.98 16 3 C -0.13 -4.31 5.54 30.59 0.17 -4.15 16 4 C 0.14 5.56 5.64 86.38 0.49 6.04 16 5 N -0.60 -27.36 2.53 -706.33 -1.79 -29.14 16 6 C -0.27 -13.96 9.53 84.04 0.80 -13.16 16 7 H 0.07 3.73 8.06 -2.91 -0.02 3.70 16 8 C 0.00 0.04 3.91 84.86 0.33 0.38 16 9 N -0.87 -42.91 8.21 21.65 0.18 -42.73 16 10 Si 0.88 41.19 29.69 68.60 2.04 43.23 16 11 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 12 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 13 H -0.30 -14.48 7.11 99.48 0.71 -13.77 16 14 C 0.18 7.71 5.03 85.63 0.43 8.14 16 15 C -0.13 -5.48 5.19 -19.73 -0.10 -5.58 16 16 C -0.04 -1.57 8.38 22.48 0.19 -1.38 16 17 C -0.11 -3.86 6.34 22.41 0.14 -3.72 16 18 Cl -0.05 -1.40 28.99 -2.72 -0.08 -1.48 16 19 C 0.13 4.25 10.98 84.69 0.93 5.18 16 20 N -0.52 -19.00 10.37 -196.84 -2.04 -21.04 16 21 C 0.29 11.47 8.36 84.73 0.71 12.18 16 22 F -0.11 -4.35 14.61 44.97 0.66 -3.69 16 23 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 24 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 25 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 26 H 0.06 1.57 8.14 -2.38 -0.02 1.55 16 27 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 28 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 29 H 0.04 1.55 8.14 -2.38 -0.02 1.53 16 30 H 0.04 1.60 8.04 -2.39 -0.02 1.58 16 31 H 0.06 2.13 5.83 -2.39 -0.01 2.11 16 32 H 0.26 12.37 7.74 -92.71 -0.72 11.65 16 33 H 0.05 1.92 7.90 -2.39 -0.02 1.90 16 34 H 0.11 5.24 5.43 -2.39 -0.01 5.22 16 35 H 0.17 7.18 4.91 -2.91 -0.01 7.16 16 36 H 0.20 4.66 8.06 -2.91 -0.02 4.63 16 Total: -1.00 -52.52 313.43 5.08 -47.44 By element: Atomic # 1 Polarization: 7.96 SS G_CDS: 1.14 Total: 9.10 kcal Atomic # 6 Polarization: -6.66 SS G_CDS: 4.98 Total: -1.67 kcal Atomic # 7 Polarization: -89.26 SS G_CDS: -3.65 Total: -92.92 kcal Atomic # 9 Polarization: -4.35 SS G_CDS: 0.66 Total: -3.69 kcal Atomic # 14 Polarization: 41.19 SS G_CDS: 2.04 Total: 43.23 kcal Atomic # 17 Polarization: -1.40 SS G_CDS: -0.08 Total: -1.48 kcal Total: -52.52 5.08 -47.44 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001231994064.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.963 kcal (2) G-P(sol) polarization free energy of solvation -52.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds