Wall clock time and date at job start Tue Mar 31 2020 06:43:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53005 * 109.47003 * 2 1 4 4 C 1.52991 * 109.47514 * 179.97438 * 3 2 1 5 5 N 1.46496 * 109.47645 * 179.97438 * 4 3 2 6 6 C 1.36934 * 120.00155 * 270.00717 * 5 4 3 7 7 H 1.08003 * 120.00210 * 322.84313 * 6 5 4 8 8 C 1.38814 * 120.00156 * 142.84714 * 6 5 4 9 9 N 1.31617 * 119.99747 * 338.62385 * 8 6 5 10 10 Si 1.86798 * 120.00059 * 158.62777 * 8 6 5 11 11 H 1.48492 * 109.47384 * 59.99863 * 10 8 6 12 12 H 1.48499 * 109.47018 * 179.97438 * 10 8 6 13 13 H 1.48505 * 109.47005 * 299.99524 * 10 8 6 14 14 C 1.46508 * 119.99916 * 90.00111 * 5 4 3 15 15 C 1.50697 * 109.47133 * 84.85929 * 14 5 4 16 16 N 1.31904 * 119.62753 * 275.37972 * 15 14 5 17 17 C 1.31928 * 121.73366 * 180.02562 * 16 15 14 18 18 Cl 1.73603 * 119.60805 * 180.02562 * 17 16 15 19 19 C 1.38393 * 120.78761 * 0.02562 * 17 16 15 20 20 C 1.38546 * 119.17636 * 359.72100 * 19 17 16 21 21 C 1.38370 * 119.62918 * 95.39676 * 15 14 5 22 22 F 1.35096 * 120.42982 * 359.97438 * 21 15 14 23 23 H 1.09004 * 109.46943 * 180.02562 * 1 2 3 24 24 H 1.09006 * 109.47518 * 299.99404 * 1 2 3 25 25 H 1.09001 * 109.47702 * 60.00072 * 1 2 3 26 26 H 1.08996 * 109.47640 * 240.00604 * 2 1 3 27 27 H 1.09001 * 109.47702 * 119.99927 * 2 1 3 28 28 H 1.09006 * 109.46944 * 59.99677 * 3 2 1 29 29 H 1.08997 * 109.47159 * 300.00828 * 3 2 1 30 30 H 1.09006 * 109.47169 * 59.99950 * 4 3 2 31 31 H 1.08997 * 109.47694 * 300.00636 * 4 3 2 32 32 H 0.96998 * 119.99976 * 185.08198 * 9 8 6 33 33 H 1.08997 * 109.47068 * 324.85806 * 14 5 4 34 34 H 1.08995 * 109.46816 * 204.85986 * 14 5 4 35 35 H 1.07997 * 120.41262 * 179.97438 * 19 17 16 36 36 H 1.07995 * 120.79339 * 180.29559 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5698 1.4427 0.0006 5 7 4.0582 2.8239 0.0000 6 6 4.2868 3.4688 -1.1861 7 1 4.6945 2.9259 -2.0261 8 6 3.9946 4.8202 -1.3090 9 7 3.1378 5.3858 -0.4853 10 14 4.8172 5.8361 -2.6434 11 1 4.4770 5.2732 -3.9747 12 1 4.3384 7.2395 -2.5630 13 1 6.2897 5.8033 -2.4535 14 6 4.3018 3.5152 1.2685 15 6 5.6827 3.1767 1.7680 16 7 5.8712 2.0740 2.4668 17 6 7.0620 1.7376 2.9245 18 17 7.2474 0.2729 3.8379 19 6 8.1650 2.5384 2.6853 20 6 8.0080 3.7024 1.9505 21 6 6.7386 4.0263 1.4886 22 9 6.5383 5.1540 0.7722 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8901 25 1 -0.3634 0.5138 -0.8900 26 1 1.8933 -0.5137 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 1.6765 1.9564 0.8900 29 1 1.6765 1.9564 -0.8899 30 1 3.9336 0.9287 -0.8891 31 1 3.9329 0.9290 0.8907 32 1 2.8776 6.3110 -0.6162 33 1 3.5618 3.1980 2.0032 34 1 4.2243 4.5917 1.1163 35 1 9.1369 2.2575 3.0633 36 1 8.8518 4.3441 1.7443 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001232162640.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:59 Heat of formation + Delta-G solvation = -11.754122 kcal Electronic energy + Delta-G solvation = -20793.803951 eV Core-core repulsion = 17446.586758 eV Total energy + Delta-G solvation = -3347.217193 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 286.094 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -48.31538 -39.71847 -36.57311 -36.16147 -34.05342 -32.39088 -31.34669 -30.52362 -27.94200 -26.22089 -24.03627 -23.06434 -22.30665 -20.83486 -19.92581 -17.28767 -17.20565 -16.77198 -16.08650 -15.30757 -14.83042 -14.73126 -13.91649 -13.80532 -13.64191 -13.48295 -13.33201 -13.08323 -13.01391 -12.16159 -12.03715 -11.76990 -11.33534 -11.15647 -11.15472 -10.99162 -10.81877 -10.58175 -10.44803 -10.31419 -10.15479 -9.95302 -9.64031 -9.57540 -9.29350 -8.57054 -8.27060 -6.68865 -5.94688 -3.42775 1.15502 1.34275 2.00760 3.33195 3.39145 3.42653 3.82962 4.41073 4.48302 4.78657 4.98592 5.09265 5.26336 5.38667 5.52386 5.58160 5.71581 5.74570 5.82101 5.96824 6.12727 6.17509 6.27345 6.43308 6.49552 6.52368 6.71185 6.73019 6.79644 6.94530 7.13416 7.29381 7.40517 7.75337 8.10873 8.41668 9.05273 9.68204 10.26923 11.10381 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.010966 B = 0.007826 C = 0.004853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2552.812796 B = 3577.082770 C = 5768.058242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.123 4.123 3 C -0.130 4.130 4 C 0.147 3.853 5 N -0.566 5.566 6 C -0.268 4.268 7 H 0.061 0.939 8 C 0.026 3.974 9 N -0.880 5.880 10 Si 0.895 3.105 11 H -0.281 1.281 12 H -0.288 1.288 13 H -0.279 1.279 14 C 0.187 3.813 15 C 0.125 3.875 16 N -0.451 5.451 17 C 0.158 3.842 18 Cl -0.046 7.046 19 C -0.153 4.153 20 C -0.108 4.108 21 C 0.067 3.933 22 F -0.113 7.113 23 H 0.043 0.957 24 H 0.050 0.950 25 H 0.051 0.949 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.052 0.948 29 H 0.062 0.938 30 H 0.039 0.961 31 H 0.044 0.956 32 H 0.260 0.740 33 H 0.051 0.949 34 H 0.118 0.882 35 H 0.143 0.857 36 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.893 -5.709 6.185 10.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.161 4.161 3 C -0.170 4.170 4 C 0.021 3.979 5 N -0.284 5.284 6 C -0.397 4.397 7 H 0.079 0.921 8 C -0.176 4.176 9 N -0.521 5.521 10 Si 0.724 3.276 11 H -0.207 1.207 12 H -0.214 1.214 13 H -0.205 1.205 14 C 0.060 3.940 15 C -0.018 4.018 16 N -0.163 5.163 17 C -0.007 4.007 18 Cl -0.018 7.018 19 C -0.175 4.175 20 C -0.135 4.135 21 C 0.044 3.956 22 F -0.092 7.092 23 H 0.062 0.938 24 H 0.069 0.931 25 H 0.070 0.930 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.081 0.919 30 H 0.058 0.942 31 H 0.063 0.937 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.136 0.864 35 H 0.161 0.839 36 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 5.118 -6.143 6.410 10.248 hybrid contribution 1.217 1.104 -0.932 1.889 sum 6.334 -5.039 5.479 9.774 Atomic orbital electron populations 1.21752 0.96799 1.00353 1.01640 1.21520 0.95058 0.98603 1.00927 1.22082 0.98740 0.94006 1.02141 1.20982 0.91620 0.86500 0.98762 1.43701 1.72632 1.10756 1.01268 1.19033 1.37550 0.92319 0.90814 0.92105 1.25151 0.96284 0.98547 0.97594 1.69866 1.30242 1.13644 1.38320 0.86486 0.80132 0.79375 0.81606 1.20687 1.21369 1.20459 1.20111 0.84916 1.01840 0.87180 1.23424 1.00631 0.87308 0.90455 1.67076 1.22910 1.16585 1.09739 1.21652 0.91049 0.90376 0.97602 1.98368 1.96951 1.34574 1.71905 1.21437 0.99117 0.95012 1.01942 1.21541 0.96589 0.97501 0.97867 1.18645 0.94548 0.86220 0.96218 1.91573 1.95533 1.47243 1.74806 0.93761 0.93084 0.92990 0.92811 0.92825 0.92915 0.91878 0.94233 0.93731 0.92983 0.93057 0.86425 0.83936 0.83509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.10 9.91 37.15 0.37 -1.73 16 2 C -0.12 -1.96 5.93 -26.73 -0.16 -2.12 16 3 C -0.13 -2.57 5.54 -26.73 -0.15 -2.72 16 4 C 0.15 3.15 5.69 -4.05 -0.02 3.13 16 5 N -0.57 -13.74 2.41 -174.62 -0.42 -14.16 16 6 C -0.27 -7.08 9.46 -15.06 -0.14 -7.22 16 7 H 0.06 1.63 7.92 -52.48 -0.42 1.22 16 8 C 0.03 0.69 4.91 -17.43 -0.09 0.61 16 9 N -0.88 -24.05 11.51 55.49 0.64 -23.41 16 10 Si 0.90 21.18 29.61 -169.99 -5.03 16.15 16 11 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 12 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 13 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 14 C 0.19 4.35 5.42 -5.19 -0.03 4.33 16 15 C 0.12 2.60 6.36 -82.51 -0.53 2.07 16 16 N -0.45 -8.78 10.24 -6.57 -0.07 -8.85 16 17 C 0.16 2.61 7.27 -17.45 -0.13 2.48 16 18 Cl -0.05 -0.65 29.11 -51.86 -1.51 -2.16 16 19 C -0.15 -2.17 9.88 -39.41 -0.39 -2.56 16 20 C -0.11 -1.66 10.16 -39.22 -0.40 -2.06 16 21 C 0.07 1.30 7.27 -39.28 -0.29 1.02 16 22 F -0.11 -2.44 16.40 2.25 0.04 -2.41 16 23 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 24 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 25 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 27 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 29 H 0.06 1.39 8.14 -51.93 -0.42 0.96 16 30 H 0.04 0.85 8.04 -51.93 -0.42 0.43 16 31 H 0.04 0.93 8.06 -51.93 -0.42 0.51 16 32 H 0.26 6.91 8.32 -40.82 -0.34 6.57 16 33 H 0.05 1.17 8.11 -51.93 -0.42 0.75 16 34 H 0.12 3.02 4.89 -51.93 -0.25 2.76 16 35 H 0.14 1.51 8.06 -52.49 -0.42 1.09 16 36 H 0.15 1.77 8.06 -52.49 -0.42 1.34 16 LS Contribution 326.85 15.07 4.93 4.93 Total: -1.00 -27.41 326.85 -8.24 -35.65 By element: Atomic # 1 Polarization: 3.90 SS G_CDS: -4.87 Total: -0.97 kcal Atomic # 6 Polarization: -2.83 SS G_CDS: -1.94 Total: -4.77 kcal Atomic # 7 Polarization: -46.57 SS G_CDS: 0.15 Total: -46.42 kcal Atomic # 9 Polarization: -2.44 SS G_CDS: 0.04 Total: -2.41 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.03 Total: 16.15 kcal Atomic # 17 Polarization: -0.65 SS G_CDS: -1.51 Total: -2.16 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -27.41 -8.24 -35.65 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001232162640.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.900 kcal (2) G-P(sol) polarization free energy of solvation -27.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds