Wall clock time and date at job start Tue Mar 31 2020 06:43:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53005 * 109.47003 * 2 1 4 4 C 1.52991 * 109.47514 * 179.97438 * 3 2 1 5 5 N 1.46496 * 109.47645 * 179.97438 * 4 3 2 6 6 C 1.36934 * 120.00155 * 270.00717 * 5 4 3 7 7 H 1.08003 * 120.00210 * 322.84313 * 6 5 4 8 8 C 1.38814 * 120.00156 * 142.84714 * 6 5 4 9 9 N 1.31617 * 119.99747 * 338.62385 * 8 6 5 10 10 Si 1.86798 * 120.00059 * 158.62777 * 8 6 5 11 11 H 1.48492 * 109.47384 * 59.99863 * 10 8 6 12 12 H 1.48499 * 109.47018 * 179.97438 * 10 8 6 13 13 H 1.48505 * 109.47005 * 299.99524 * 10 8 6 14 14 C 1.46508 * 119.99916 * 90.00111 * 5 4 3 15 15 C 1.50697 * 109.47133 * 84.85929 * 14 5 4 16 16 N 1.31904 * 119.62753 * 275.37972 * 15 14 5 17 17 C 1.31928 * 121.73366 * 180.02562 * 16 15 14 18 18 Cl 1.73603 * 119.60805 * 180.02562 * 17 16 15 19 19 C 1.38393 * 120.78761 * 0.02562 * 17 16 15 20 20 C 1.38546 * 119.17636 * 359.72100 * 19 17 16 21 21 C 1.38370 * 119.62918 * 95.39676 * 15 14 5 22 22 F 1.35096 * 120.42982 * 359.97438 * 21 15 14 23 23 H 1.09004 * 109.46943 * 180.02562 * 1 2 3 24 24 H 1.09006 * 109.47518 * 299.99404 * 1 2 3 25 25 H 1.09001 * 109.47702 * 60.00072 * 1 2 3 26 26 H 1.08996 * 109.47640 * 240.00604 * 2 1 3 27 27 H 1.09001 * 109.47702 * 119.99927 * 2 1 3 28 28 H 1.09006 * 109.46944 * 59.99677 * 3 2 1 29 29 H 1.08997 * 109.47159 * 300.00828 * 3 2 1 30 30 H 1.09006 * 109.47169 * 59.99950 * 4 3 2 31 31 H 1.08997 * 109.47694 * 300.00636 * 4 3 2 32 32 H 0.96998 * 119.99976 * 185.08198 * 9 8 6 33 33 H 1.08997 * 109.47068 * 324.85806 * 14 5 4 34 34 H 1.08995 * 109.46816 * 204.85986 * 14 5 4 35 35 H 1.07997 * 120.41262 * 179.97438 * 19 17 16 36 36 H 1.07995 * 120.79339 * 180.29559 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5698 1.4427 0.0006 5 7 4.0582 2.8239 0.0000 6 6 4.2868 3.4688 -1.1861 7 1 4.6945 2.9259 -2.0261 8 6 3.9946 4.8202 -1.3090 9 7 3.1378 5.3858 -0.4853 10 14 4.8172 5.8361 -2.6434 11 1 4.4770 5.2732 -3.9747 12 1 4.3384 7.2395 -2.5630 13 1 6.2897 5.8033 -2.4535 14 6 4.3018 3.5152 1.2685 15 6 5.6827 3.1767 1.7680 16 7 5.8712 2.0740 2.4668 17 6 7.0620 1.7376 2.9245 18 17 7.2474 0.2729 3.8379 19 6 8.1650 2.5384 2.6853 20 6 8.0080 3.7024 1.9505 21 6 6.7386 4.0263 1.4886 22 9 6.5383 5.1540 0.7722 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8901 25 1 -0.3634 0.5138 -0.8900 26 1 1.8933 -0.5137 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 1.6765 1.9564 0.8900 29 1 1.6765 1.9564 -0.8899 30 1 3.9336 0.9287 -0.8891 31 1 3.9329 0.9290 0.8907 32 1 2.8776 6.3110 -0.6162 33 1 3.5618 3.1980 2.0032 34 1 4.2243 4.5917 1.1163 35 1 9.1369 2.2575 3.0633 36 1 8.8518 4.3441 1.7443 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001232162640.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:59 Heat of formation + Delta-G solvation = -25.449801 kcal Electronic energy + Delta-G solvation = -20794.397840 eV Core-core repulsion = 17446.586758 eV Total energy + Delta-G solvation = -3347.811082 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 286.094 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -49.86907 -41.12505 -38.13260 -37.55327 -35.58579 -33.88711 -33.09372 -32.00679 -29.49483 -27.95744 -25.72248 -24.45368 -23.78383 -22.38226 -21.58215 -18.95214 -18.72322 -18.27881 -17.53678 -16.86237 -16.73935 -16.24781 -15.62709 -15.34649 -15.17150 -14.95396 -14.84246 -14.45273 -14.30306 -13.74291 -13.52171 -13.27061 -13.07986 -12.77123 -12.64346 -12.47706 -12.36973 -12.26703 -12.09936 -11.87709 -11.83113 -11.58542 -11.26816 -10.94279 -10.73806 -10.53425 -9.69137 -8.60834 -7.93341 -5.46226 -0.21885 0.02954 0.74458 1.42909 1.47359 1.52022 2.38904 2.52297 3.08816 3.21192 3.45333 3.65680 3.78874 3.84016 4.17516 4.18222 4.29366 4.44166 4.53037 4.58768 4.69550 4.75683 4.89149 4.98333 5.05161 5.08246 5.09859 5.19075 5.35955 5.45849 5.52442 5.54323 5.61853 5.73546 6.42506 6.68160 7.09520 7.76271 8.32557 9.09940 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.010966 B = 0.007826 C = 0.004853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2552.812796 B = 3577.082770 C = 5768.058242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.115 4.115 3 C -0.118 4.118 4 C 0.150 3.850 5 N -0.582 5.582 6 C -0.277 4.277 7 H 0.051 0.949 8 C -0.010 4.010 9 N -0.908 5.908 10 Si 0.944 3.056 11 H -0.275 1.275 12 H -0.288 1.288 13 H -0.278 1.278 14 C 0.197 3.803 15 C 0.104 3.896 16 N -0.472 5.472 17 C 0.148 3.852 18 Cl -0.022 7.022 19 C -0.127 4.127 20 C -0.090 4.090 21 C 0.039 3.961 22 F -0.133 7.133 23 H 0.070 0.930 24 H 0.048 0.952 25 H 0.045 0.955 26 H 0.061 0.939 27 H 0.064 0.936 28 H 0.035 0.965 29 H 0.034 0.966 30 H 0.036 0.964 31 H 0.049 0.951 32 H 0.256 0.744 33 H 0.039 0.961 34 H 0.090 0.910 35 H 0.192 0.808 36 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.152 -7.132 7.008 12.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.154 4.154 3 C -0.158 4.158 4 C 0.025 3.975 5 N -0.301 5.301 6 C -0.407 4.407 7 H 0.069 0.931 8 C -0.209 4.209 9 N -0.550 5.550 10 Si 0.772 3.228 11 H -0.201 1.201 12 H -0.214 1.214 13 H -0.204 1.204 14 C 0.070 3.930 15 C -0.038 4.038 16 N -0.184 5.184 17 C -0.018 4.018 18 Cl 0.007 6.993 19 C -0.147 4.147 20 C -0.116 4.116 21 C 0.016 3.984 22 F -0.112 7.112 23 H 0.089 0.911 24 H 0.067 0.933 25 H 0.065 0.935 26 H 0.080 0.920 27 H 0.083 0.917 28 H 0.054 0.946 29 H 0.052 0.948 30 H 0.055 0.945 31 H 0.067 0.933 32 H 0.066 0.934 33 H 0.057 0.943 34 H 0.108 0.892 35 H 0.209 0.791 36 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges 7.391 -7.586 7.248 12.834 hybrid contribution 0.646 1.409 -1.004 1.846 sum 8.037 -6.177 6.245 11.906 Atomic orbital electron populations 1.21724 0.95225 1.01978 1.01325 1.21456 0.96422 0.95625 1.01850 1.21915 0.97689 0.96386 0.99782 1.21004 0.92462 0.85422 0.98657 1.43819 1.73908 1.11343 1.01012 1.19103 1.37313 0.92716 0.91553 0.93100 1.25654 0.96690 0.99198 0.99369 1.69979 1.31730 1.13480 1.39845 0.85718 0.79153 0.78077 0.79895 1.20114 1.21415 1.20414 1.19699 0.86669 1.00043 0.86623 1.22757 0.99611 0.88783 0.92633 1.66928 1.25018 1.16266 1.10188 1.22099 0.90875 0.91508 0.97295 1.98380 1.96739 1.33102 1.71095 1.21981 1.00280 0.93157 0.99331 1.21974 0.95705 0.97943 0.95953 1.18954 0.96142 0.85962 0.97321 1.91518 1.95815 1.48272 1.75597 0.91109 0.93265 0.93535 0.91981 0.91703 0.94625 0.94751 0.94510 0.93305 0.93441 0.94256 0.89183 0.79089 0.79513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.95 9.91 71.98 0.71 -3.23 16 2 C -0.12 -3.60 5.93 30.59 0.18 -3.42 16 3 C -0.12 -4.82 5.54 30.59 0.17 -4.65 16 4 C 0.15 6.60 5.69 86.38 0.49 7.09 16 5 N -0.58 -29.37 2.41 -706.36 -1.71 -31.08 16 6 C -0.28 -15.16 9.46 84.03 0.79 -14.37 16 7 H 0.05 2.83 7.92 -2.91 -0.02 2.80 16 8 C -0.01 -0.54 4.91 84.86 0.42 -0.13 16 9 N -0.91 -51.82 11.51 21.65 0.25 -51.57 16 10 Si 0.94 44.41 29.61 68.60 2.03 46.44 16 11 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 12 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 13 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 14 C 0.20 9.61 5.42 85.63 0.46 10.07 16 15 C 0.10 4.36 6.36 42.58 0.27 4.63 16 16 N -0.47 -18.00 10.24 -174.70 -1.79 -19.79 16 17 C 0.15 4.45 7.27 84.72 0.62 5.07 16 18 Cl -0.02 -0.54 29.11 -2.72 -0.08 -0.62 16 19 C -0.13 -3.02 9.88 22.38 0.22 -2.80 16 20 C -0.09 -2.42 10.16 22.50 0.23 -2.19 16 21 C 0.04 1.49 7.27 22.46 0.16 1.65 16 22 F -0.13 -5.84 16.40 44.97 0.74 -5.10 16 23 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 24 H 0.05 1.34 8.14 -2.38 -0.02 1.32 16 25 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 26 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 27 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 28 H 0.03 1.54 8.14 -2.38 -0.02 1.52 16 29 H 0.03 1.57 8.14 -2.39 -0.02 1.55 16 30 H 0.04 1.61 8.04 -2.38 -0.02 1.59 16 31 H 0.05 2.08 8.06 -2.39 -0.02 2.06 16 32 H 0.26 14.19 8.32 -92.71 -0.77 13.42 16 33 H 0.04 1.92 8.11 -2.39 -0.02 1.90 16 34 H 0.09 4.90 4.89 -2.39 -0.01 4.88 16 35 H 0.19 2.76 8.06 -2.91 -0.02 2.74 16 36 H 0.19 3.55 8.06 -2.91 -0.02 3.52 16 Total: -1.00 -62.31 326.85 5.25 -57.06 By element: Atomic # 1 Polarization: 5.87 SS G_CDS: 1.07 Total: 6.95 kcal Atomic # 6 Polarization: -7.01 SS G_CDS: 4.73 Total: -2.28 kcal Atomic # 7 Polarization: -99.19 SS G_CDS: -3.25 Total: -102.44 kcal Atomic # 9 Polarization: -5.84 SS G_CDS: 0.74 Total: -5.10 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.44 kcal Atomic # 17 Polarization: -0.54 SS G_CDS: -0.08 Total: -0.62 kcal Total: -62.31 5.25 -57.06 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001232162640.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.607 kcal (2) G-P(sol) polarization free energy of solvation -62.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds