Wall clock time and date at job start Tue Mar 31 2020 06:44:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52994 * 109.47350 * 2 1 4 4 C 1.52997 * 109.47521 * 180.02562 * 3 2 1 5 5 N 1.46496 * 109.47491 * 185.49873 * 4 3 2 6 6 C 1.36937 * 119.99976 * 83.62126 * 5 4 3 7 7 H 1.08007 * 120.00296 * 168.74310 * 6 5 4 8 8 C 1.38818 * 120.00175 * 348.73444 * 6 5 4 9 9 N 1.31614 * 119.99725 * 0.63951 * 8 6 5 10 10 Si 1.86798 * 120.00108 * 180.63568 * 8 6 5 11 11 H 1.48504 * 109.47016 * 90.00345 * 10 8 6 12 12 H 1.48495 * 109.47247 * 210.00254 * 10 8 6 13 13 H 1.48504 * 109.47224 * 330.00452 * 10 8 6 14 14 C 1.46497 * 120.00143 * 263.62541 * 5 4 3 15 15 C 1.50703 * 109.46754 * 263.53911 * 14 5 4 16 16 C 1.38187 * 120.41440 * 263.56015 * 15 14 5 17 17 N 1.31865 * 120.83076 * 180.02562 * 16 15 14 18 18 C 1.31893 * 121.78274 * 0.02562 * 17 16 15 19 19 C 1.38358 * 120.74125 * 0.02562 * 18 17 16 20 20 F 1.35104 * 120.44869 * 179.97438 * 19 18 17 21 21 C 1.38724 * 120.41254 * 83.61073 * 15 14 5 22 22 Cl 1.73598 * 120.81380 * 0.24741 * 21 15 14 23 23 H 1.09008 * 109.46908 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.46971 * 299.99897 * 1 2 3 25 25 H 1.08998 * 109.47172 * 60.00022 * 1 2 3 26 26 H 1.08999 * 109.47401 * 239.99466 * 2 1 3 27 27 H 1.08998 * 109.47172 * 119.99978 * 2 1 3 28 28 H 1.08999 * 109.47305 * 59.99407 * 3 2 1 29 29 H 1.09007 * 109.47038 * 299.99917 * 3 2 1 30 30 H 1.08993 * 109.47526 * 65.49571 * 4 3 2 31 31 H 1.09006 * 109.46762 * 305.49995 * 4 3 2 32 32 H 0.96998 * 120.00013 * 179.97438 * 9 8 6 33 33 H 1.08998 * 109.47711 * 143.54165 * 14 5 4 34 34 H 1.09000 * 109.47372 * 23.53798 * 14 5 4 35 35 H 1.07997 * 119.58810 * 0.02562 * 16 15 14 36 36 H 1.08002 * 119.63354 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0584 2.8173 0.1317 6 6 4.1629 3.3904 1.3709 7 1 4.6880 4.3267 1.4904 8 6 3.5940 2.7682 2.4737 9 7 2.9649 1.6211 2.3302 10 14 3.7213 3.5589 4.1613 11 1 2.5566 4.4546 4.3774 12 1 3.7327 2.5015 5.2038 13 1 4.9757 4.3494 4.2443 14 6 4.4349 3.5789 -1.0617 15 6 5.9247 3.4847 -1.2684 16 6 6.7595 4.4848 -0.8076 17 7 8.0642 4.4110 -0.9844 18 6 8.6247 3.3899 -1.6031 19 6 7.8542 2.3505 -2.0934 20 9 8.4345 1.3077 -2.7267 21 6 6.4750 2.3933 -1.9246 22 17 5.4653 1.1165 -2.5276 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 1.6766 1.9563 0.8899 29 1 1.6767 1.9563 -0.8900 30 1 3.9330 1.0164 -0.9359 31 1 3.9336 0.8455 0.8358 32 1 2.5676 1.1861 3.1008 33 1 4.1517 4.6233 -0.9306 34 1 3.9208 3.1695 -1.9313 35 1 6.3382 5.3377 -0.2962 36 1 9.6970 3.3652 -1.7292 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001235498227.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:32 Heat of formation + Delta-G solvation = 9.746334 kcal Electronic energy + Delta-G solvation = -20921.764574 eV Core-core repulsion = 17575.479710 eV Total energy + Delta-G solvation = -3346.284863 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 286.094 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -48.86649 -39.90901 -36.71912 -36.25847 -33.74067 -32.47537 -31.17145 -30.32567 -27.94464 -26.10387 -23.90095 -23.29690 -22.30676 -20.66745 -19.73485 -17.48331 -17.29499 -16.74038 -16.52200 -15.83773 -15.22074 -14.14553 -14.09826 -13.86445 -13.59562 -13.42852 -13.33695 -13.01261 -12.80318 -12.48469 -12.08858 -11.77147 -11.48450 -11.37919 -11.02410 -10.87682 -10.65047 -10.44813 -10.12502 -10.02823 -9.78986 -9.63935 -9.46803 -9.39582 -8.93022 -8.70831 -8.26394 -6.87082 -5.66805 -3.19910 1.04284 1.16722 2.15468 3.34317 3.41417 3.41929 3.74928 4.06154 4.43591 4.58566 4.83108 4.93959 5.32506 5.47680 5.53493 5.61663 5.87432 5.89120 5.95022 5.97001 6.11334 6.39095 6.45985 6.51934 6.64906 6.72380 6.83423 6.89501 7.04458 7.35828 7.44646 7.60779 7.91624 7.96006 8.24686 8.39439 9.22081 9.77817 10.20323 11.22489 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.014637 B = 0.007064 C = 0.005201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1912.467838 B = 3962.846039 C = 5381.841782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.110 4.110 3 C -0.109 4.109 4 C 0.164 3.836 5 N -0.585 5.585 6 C -0.249 4.249 7 H 0.073 0.927 8 C -0.003 4.003 9 N -0.896 5.896 10 Si 0.908 3.092 11 H -0.288 1.288 12 H -0.291 1.291 13 H -0.282 1.282 14 C 0.181 3.819 15 C -0.094 4.094 16 C 0.110 3.890 17 N -0.458 5.458 18 C 0.064 3.936 19 C 0.049 3.951 20 F -0.127 7.127 21 C -0.028 4.028 22 Cl -0.030 7.030 23 H 0.036 0.964 24 H 0.050 0.950 25 H 0.040 0.960 26 H 0.031 0.969 27 H 0.062 0.938 28 H 0.102 0.898 29 H 0.004 0.996 30 H 0.016 0.984 31 H 0.090 0.910 32 H 0.250 0.750 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.168 0.832 36 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.967 0.695 -8.492 9.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.148 4.148 3 C -0.148 4.148 4 C 0.041 3.959 5 N -0.303 5.303 6 C -0.378 4.378 7 H 0.091 0.909 8 C -0.199 4.199 9 N -0.543 5.543 10 Si 0.739 3.261 11 H -0.216 1.216 12 H -0.218 1.218 13 H -0.207 1.207 14 C 0.052 3.948 15 C -0.101 4.101 16 C -0.048 4.048 17 N -0.166 5.166 18 C -0.095 4.095 19 C 0.027 3.973 20 F -0.106 7.106 21 C -0.064 4.064 22 Cl -0.001 7.001 23 H 0.055 0.945 24 H 0.069 0.931 25 H 0.060 0.940 26 H 0.050 0.950 27 H 0.081 0.919 28 H 0.120 0.880 29 H 0.022 0.978 30 H 0.034 0.966 31 H 0.108 0.892 32 H 0.061 0.939 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.185 0.815 36 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 4.304 1.094 -8.068 9.210 hybrid contribution -0.413 -0.755 0.522 1.006 sum 3.891 0.339 -7.547 8.498 Atomic orbital electron populations 1.21731 0.97887 0.99594 1.00885 1.21332 0.93776 0.99604 1.00069 1.22314 0.98374 0.93837 1.00276 1.21247 0.92278 0.84266 0.98155 1.44226 1.73273 1.12037 1.00795 1.19297 1.29245 1.04838 0.84377 0.90911 1.24848 0.99269 0.97627 0.98152 1.70292 1.39616 1.16483 1.27867 0.86190 0.77701 0.78208 0.84024 1.21561 1.21775 1.20748 1.19815 0.85612 0.97703 0.91697 1.22327 1.03458 0.91492 0.92867 1.22747 0.87628 0.98280 0.96176 1.67652 1.13499 1.23321 1.12080 1.22704 1.00574 0.89106 0.97130 1.18641 0.90221 0.88294 1.00185 1.91511 1.84164 1.55378 1.79512 1.21340 0.89813 0.93616 1.01622 1.98380 1.67352 1.48647 1.85726 0.94456 0.93073 0.94048 0.94973 0.91878 0.87998 0.97761 0.96558 0.89174 0.93920 0.91861 0.91913 0.81511 0.81624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.42 9.91 37.16 0.37 -2.06 16 2 C -0.11 -2.13 5.93 -26.74 -0.16 -2.28 16 3 C -0.11 -2.39 4.60 -26.74 -0.12 -2.52 16 4 C 0.16 3.74 4.93 -4.05 -0.02 3.72 16 5 N -0.59 -13.26 2.54 -174.61 -0.44 -13.70 16 6 C -0.25 -6.17 9.75 -15.06 -0.15 -6.32 16 7 H 0.07 1.75 7.83 -52.48 -0.41 1.34 16 8 C 0.00 -0.06 5.24 -17.43 -0.09 -0.16 16 9 N -0.90 -23.21 7.15 55.49 0.40 -22.82 16 10 Si 0.91 20.83 29.55 -169.99 -5.02 15.80 16 11 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 12 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 13 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 14 C 0.18 3.38 5.39 -5.19 -0.03 3.35 16 15 C -0.09 -1.65 5.43 -104.46 -0.57 -2.21 16 16 C 0.11 1.80 10.83 -17.56 -0.19 1.61 16 17 N -0.46 -7.34 10.36 -13.22 -0.14 -7.48 16 18 C 0.06 0.93 11.17 -17.48 -0.20 0.73 16 19 C 0.05 0.78 7.32 -39.25 -0.29 0.49 16 20 F -0.13 -1.94 16.94 2.25 0.04 -1.90 16 21 C -0.03 -0.48 6.37 -39.11 -0.25 -0.72 16 22 Cl -0.03 -0.51 24.34 -51.86 -1.26 -1.77 16 23 H 0.04 0.55 8.14 -51.92 -0.42 0.13 16 24 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 25 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 26 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 28 H 0.10 2.57 5.85 -51.93 -0.30 2.26 16 29 H 0.00 0.08 8.14 -51.93 -0.42 -0.34 16 30 H 0.02 0.35 4.60 -51.93 -0.24 0.11 16 31 H 0.09 2.36 6.08 -51.93 -0.32 2.04 16 32 H 0.25 6.44 8.31 -40.82 -0.34 6.10 16 33 H 0.06 1.10 8.00 -51.93 -0.42 0.69 16 34 H 0.06 1.12 7.16 -51.93 -0.37 0.75 16 35 H 0.17 2.45 8.06 -52.49 -0.42 2.03 16 36 H 0.17 1.86 8.06 -52.49 -0.42 1.44 16 LS Contribution 311.89 15.07 4.70 4.70 Total: -1.00 -25.99 311.89 -7.99 -33.99 By element: Atomic # 1 Polarization: 4.12 SS G_CDS: -4.57 Total: -0.45 kcal Atomic # 6 Polarization: -4.68 SS G_CDS: -1.69 Total: -6.37 kcal Atomic # 7 Polarization: -43.81 SS G_CDS: -0.18 Total: -43.99 kcal Atomic # 9 Polarization: -1.94 SS G_CDS: 0.04 Total: -1.90 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.80 kcal Atomic # 17 Polarization: -0.51 SS G_CDS: -1.26 Total: -1.77 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -25.99 -7.99 -33.99 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235498227.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.734 kcal (2) G-P(sol) polarization free energy of solvation -25.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.987 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds