Wall clock time and date at job start Tue Mar 31 2020 06:44:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52994 * 109.47350 * 2 1 4 4 C 1.52997 * 109.47521 * 180.02562 * 3 2 1 5 5 N 1.46496 * 109.47491 * 185.49873 * 4 3 2 6 6 C 1.36937 * 119.99976 * 83.62126 * 5 4 3 7 7 H 1.08007 * 120.00296 * 168.74310 * 6 5 4 8 8 C 1.38818 * 120.00175 * 348.73444 * 6 5 4 9 9 N 1.31614 * 119.99725 * 0.63951 * 8 6 5 10 10 Si 1.86798 * 120.00108 * 180.63568 * 8 6 5 11 11 H 1.48504 * 109.47016 * 90.00345 * 10 8 6 12 12 H 1.48495 * 109.47247 * 210.00254 * 10 8 6 13 13 H 1.48504 * 109.47224 * 330.00452 * 10 8 6 14 14 C 1.46497 * 120.00143 * 263.62541 * 5 4 3 15 15 C 1.50703 * 109.46754 * 263.53911 * 14 5 4 16 16 C 1.38187 * 120.41440 * 263.56015 * 15 14 5 17 17 N 1.31865 * 120.83076 * 180.02562 * 16 15 14 18 18 C 1.31893 * 121.78274 * 0.02562 * 17 16 15 19 19 C 1.38358 * 120.74125 * 0.02562 * 18 17 16 20 20 F 1.35104 * 120.44869 * 179.97438 * 19 18 17 21 21 C 1.38724 * 120.41254 * 83.61073 * 15 14 5 22 22 Cl 1.73598 * 120.81380 * 0.24741 * 21 15 14 23 23 H 1.09008 * 109.46908 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.46971 * 299.99897 * 1 2 3 25 25 H 1.08998 * 109.47172 * 60.00022 * 1 2 3 26 26 H 1.08999 * 109.47401 * 239.99466 * 2 1 3 27 27 H 1.08998 * 109.47172 * 119.99978 * 2 1 3 28 28 H 1.08999 * 109.47305 * 59.99407 * 3 2 1 29 29 H 1.09007 * 109.47038 * 299.99917 * 3 2 1 30 30 H 1.08993 * 109.47526 * 65.49571 * 4 3 2 31 31 H 1.09006 * 109.46762 * 305.49995 * 4 3 2 32 32 H 0.96998 * 120.00013 * 179.97438 * 9 8 6 33 33 H 1.08998 * 109.47711 * 143.54165 * 14 5 4 34 34 H 1.09000 * 109.47372 * 23.53798 * 14 5 4 35 35 H 1.07997 * 119.58810 * 0.02562 * 16 15 14 36 36 H 1.08002 * 119.63354 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0584 2.8173 0.1317 6 6 4.1629 3.3904 1.3709 7 1 4.6880 4.3267 1.4904 8 6 3.5940 2.7682 2.4737 9 7 2.9649 1.6211 2.3302 10 14 3.7213 3.5589 4.1613 11 1 2.5566 4.4546 4.3774 12 1 3.7327 2.5015 5.2038 13 1 4.9757 4.3494 4.2443 14 6 4.4349 3.5789 -1.0617 15 6 5.9247 3.4847 -1.2684 16 6 6.7595 4.4848 -0.8076 17 7 8.0642 4.4110 -0.9844 18 6 8.6247 3.3899 -1.6031 19 6 7.8542 2.3505 -2.0934 20 9 8.4345 1.3077 -2.7267 21 6 6.4750 2.3933 -1.9246 22 17 5.4653 1.1165 -2.5276 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 1.6766 1.9563 0.8899 29 1 1.6767 1.9563 -0.8900 30 1 3.9330 1.0164 -0.9359 31 1 3.9336 0.8455 0.8358 32 1 2.5676 1.1861 3.1008 33 1 4.1517 4.6233 -0.9306 34 1 3.9208 3.1695 -1.9313 35 1 6.3382 5.3377 -0.2962 36 1 9.6970 3.3652 -1.7292 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001235498227.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:32 Heat of formation + Delta-G solvation = -1.902504 kcal Electronic energy + Delta-G solvation = -20922.269705 eV Core-core repulsion = 17575.479710 eV Total energy + Delta-G solvation = -3346.789995 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 286.094 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -50.09285 -41.19749 -38.28043 -37.72643 -35.26603 -34.08093 -32.58942 -31.84632 -29.54868 -27.69099 -25.48470 -24.65221 -23.75431 -22.26435 -21.43438 -18.92820 -18.56726 -18.19095 -17.97583 -17.21802 -16.87260 -15.82100 -15.42784 -15.37450 -15.19173 -14.98102 -14.60648 -14.41921 -14.21068 -13.86492 -13.52108 -13.33507 -13.08954 -12.91080 -12.78982 -12.48363 -12.27126 -12.09711 -11.84335 -11.75990 -11.40807 -11.26301 -11.08236 -10.82416 -10.35737 -10.10759 -9.97263 -8.66796 -7.56491 -5.09700 -0.23619 -0.11285 0.83213 1.51044 1.53815 1.58988 2.44795 2.60900 2.80968 3.37300 3.44291 3.59850 3.68090 3.84323 4.15496 4.37139 4.40942 4.47479 4.54284 4.65257 4.74249 4.90482 4.96074 5.04819 5.14455 5.20241 5.34607 5.40185 5.47176 5.63538 5.70238 5.75471 6.05162 6.41605 6.52325 6.70706 7.32981 7.98138 8.36894 9.30373 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.014637 B = 0.007064 C = 0.005201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1912.467838 B = 3962.846039 C = 5381.841782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.105 4.105 3 C -0.100 4.100 4 C 0.173 3.827 5 N -0.601 5.601 6 C -0.249 4.249 7 H 0.078 0.922 8 C -0.051 4.051 9 N -0.909 5.909 10 Si 0.958 3.042 11 H -0.291 1.291 12 H -0.303 1.303 13 H -0.277 1.277 14 C 0.183 3.817 15 C -0.108 4.108 16 C 0.111 3.889 17 N -0.466 5.466 18 C 0.079 3.921 19 C 0.044 3.956 20 F -0.123 7.123 21 C -0.038 4.038 22 Cl -0.033 7.033 23 H 0.059 0.941 24 H 0.039 0.961 25 H 0.052 0.948 26 H 0.044 0.956 27 H 0.043 0.957 28 H 0.070 0.930 29 H 0.006 0.994 30 H 0.032 0.968 31 H 0.053 0.947 32 H 0.239 0.761 33 H 0.075 0.925 34 H 0.068 0.932 35 H 0.181 0.819 36 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.926 1.215 -9.515 10.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.143 4.143 3 C -0.139 4.139 4 C 0.049 3.951 5 N -0.320 5.320 6 C -0.378 4.378 7 H 0.096 0.904 8 C -0.245 4.245 9 N -0.557 5.557 10 Si 0.789 3.211 11 H -0.218 1.218 12 H -0.231 1.231 13 H -0.203 1.203 14 C 0.055 3.945 15 C -0.114 4.114 16 C -0.047 4.047 17 N -0.174 5.174 18 C -0.080 4.080 19 C 0.022 3.978 20 F -0.102 7.102 21 C -0.074 4.074 22 Cl -0.003 7.003 23 H 0.078 0.922 24 H 0.058 0.942 25 H 0.071 0.929 26 H 0.063 0.937 27 H 0.062 0.938 28 H 0.088 0.912 29 H 0.025 0.975 30 H 0.050 0.950 31 H 0.072 0.928 32 H 0.050 0.950 33 H 0.093 0.907 34 H 0.086 0.914 35 H 0.198 0.802 36 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges 5.286 1.641 -9.124 10.671 hybrid contribution -0.595 -0.888 0.721 1.289 sum 4.691 0.753 -8.403 9.653 Atomic orbital electron populations 1.21657 0.95796 1.01107 1.00866 1.21254 0.95639 0.97777 0.99663 1.22139 0.97991 0.95128 0.98635 1.21035 0.92607 0.84267 0.97203 1.44312 1.74265 1.12106 1.01352 1.19532 1.28220 1.04801 0.85272 0.90414 1.25414 1.00167 0.98437 1.00504 1.70493 1.40562 1.17206 1.27482 0.85396 0.77471 0.77019 0.81191 1.21849 1.23071 1.20259 1.19869 0.86474 0.97804 0.90365 1.22109 1.02484 0.92373 0.94440 1.22979 0.87839 0.98342 0.95497 1.67756 1.13173 1.23856 1.12599 1.23312 1.02121 0.87682 0.94840 1.18735 0.89790 0.88822 1.00497 1.91523 1.83966 1.55287 1.79435 1.21561 0.90609 0.93429 1.01827 1.98372 1.67591 1.48748 1.85636 0.92189 0.94220 0.92904 0.93709 0.93838 0.91163 0.97510 0.95027 0.92837 0.95037 0.90685 0.91406 0.80215 0.77959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.46 9.91 71.98 0.71 -3.75 16 2 C -0.11 -4.05 5.93 30.59 0.18 -3.87 16 3 C -0.10 -4.41 4.60 30.59 0.14 -4.27 16 4 C 0.17 7.94 4.93 86.38 0.43 8.36 16 5 N -0.60 -27.11 2.54 -706.35 -1.80 -28.91 16 6 C -0.25 -12.30 9.75 84.03 0.82 -11.48 16 7 H 0.08 3.68 7.83 -2.91 -0.02 3.66 16 8 C -0.05 -2.63 5.24 84.86 0.44 -2.19 16 9 N -0.91 -48.43 7.15 21.65 0.15 -48.27 16 10 Si 0.96 43.34 29.55 68.60 2.03 45.37 16 11 H -0.29 -13.15 7.11 99.48 0.71 -12.44 16 12 H -0.30 -14.19 7.11 99.48 0.71 -13.49 16 13 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 14 C 0.18 6.63 5.39 85.63 0.46 7.09 16 15 C -0.11 -3.60 5.43 -19.76 -0.11 -3.71 16 16 C 0.11 3.40 10.83 84.68 0.92 4.32 16 17 N -0.47 -13.68 10.36 -195.72 -2.03 -15.70 16 18 C 0.08 2.06 11.17 84.71 0.95 3.01 16 19 C 0.04 1.29 7.32 22.49 0.16 1.45 16 20 F -0.12 -3.50 16.94 44.97 0.76 -2.74 16 21 C -0.04 -1.25 6.37 22.57 0.14 -1.11 16 22 Cl -0.03 -1.06 24.34 -2.72 -0.07 -1.13 16 23 H 0.06 1.67 8.14 -2.38 -0.02 1.65 16 24 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 25 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 26 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 27 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 28 H 0.07 3.62 5.85 -2.39 -0.01 3.60 16 29 H 0.01 0.27 8.14 -2.38 -0.02 0.25 16 30 H 0.03 1.33 4.60 -2.39 -0.01 1.32 16 31 H 0.05 2.87 6.08 -2.38 -0.01 2.85 16 32 H 0.24 12.79 8.31 -92.71 -0.77 12.02 16 33 H 0.07 2.52 8.00 -2.39 -0.02 2.50 16 34 H 0.07 2.36 7.16 -2.39 -0.02 2.34 16 35 H 0.18 4.92 8.06 -2.91 -0.02 4.89 16 36 H 0.20 3.68 8.06 -2.91 -0.02 3.65 16 Total: -1.00 -55.27 311.89 5.39 -49.88 By element: Atomic # 1 Polarization: 6.56 SS G_CDS: 1.09 Total: 7.65 kcal Atomic # 6 Polarization: -11.40 SS G_CDS: 5.25 Total: -6.14 kcal Atomic # 7 Polarization: -89.21 SS G_CDS: -3.67 Total: -92.88 kcal Atomic # 9 Polarization: -3.50 SS G_CDS: 0.76 Total: -2.74 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 2.03 Total: 45.37 kcal Atomic # 17 Polarization: -1.06 SS G_CDS: -0.07 Total: -1.13 kcal Total: -55.27 5.39 -49.88 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235498227.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.975 kcal (2) G-P(sol) polarization free energy of solvation -55.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds