Wall clock time and date at job start Tue Mar 31 2020 05:49:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30821 * 1 3 3 Si 1.86804 * 119.99643 * 2 1 4 4 H 1.48499 * 109.46869 * 270.00174 * 3 2 1 5 5 H 1.48496 * 109.47072 * 30.00078 * 3 2 1 6 6 H 1.48495 * 109.47102 * 150.00287 * 3 2 1 7 7 C 1.39943 * 120.00399 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99854 * 190.73952 * 7 2 1 9 9 C 1.41397 * 119.99646 * 10.73788 * 7 2 1 10 10 C 1.40728 * 120.24942 * 30.40563 * 9 7 2 11 11 C 1.37590 * 119.74879 * 179.97438 * 10 9 7 12 12 C 1.38655 * 120.25032 * 359.97438 * 11 10 9 13 13 C 1.38621 * 120.49878 * 0.02562 * 12 11 10 14 14 C 1.37635 * 120.24639 * 0.02562 * 13 12 11 15 15 C 1.50697 * 120.12447 * 179.97438 * 14 13 12 16 16 N 1.46894 * 109.47634 * 264.21849 * 15 14 13 17 17 C 1.47877 * 111.00153 * 277.16903 * 16 15 14 18 18 C 1.52445 * 105.62813 * 213.35337 * 17 16 15 19 19 N 1.33168 * 138.69281 * 197.73898 * 18 17 16 20 20 C 1.28481 * 117.77914 * 180.20077 * 19 18 17 21 21 S 1.70812 * 110.20244 * 359.97324 * 20 19 18 22 22 C 1.34126 * 108.08544 * 17.84680 * 18 17 16 23 23 C 1.47995 * 111.00442 * 163.02869 * 16 15 14 24 24 H 0.97005 * 120.00429 * 359.97438 * 1 2 3 25 25 H 1.08000 * 120.12405 * 0.25461 * 10 9 7 26 26 H 1.08006 * 119.87711 * 179.97438 * 11 10 9 27 27 H 1.08001 * 119.75364 * 179.97438 * 12 11 10 28 28 H 1.08001 * 119.87266 * 180.02562 * 13 12 11 29 29 H 1.09006 * 109.47398 * 24.22104 * 15 14 13 30 30 H 1.09001 * 109.47104 * 144.22022 * 15 14 13 31 31 H 1.08999 * 110.21846 * 332.39018 * 17 16 15 32 32 H 1.08997 * 110.21926 * 94.31587 * 17 16 15 33 33 H 1.07997 * 124.89395 * 179.97438 * 20 19 18 34 34 H 1.09004 * 110.27459 * 265.41649 * 23 16 15 35 35 H 1.09001 * 110.27333 * 27.39920 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2421 1.6178 0.0000 4 1 2.4895 2.0465 -1.4001 5 1 1.4395 2.6527 0.7000 6 1 3.5397 1.4403 0.7000 7 6 2.0080 -1.2119 -0.0005 8 1 3.0738 -1.2201 0.1737 9 6 1.3196 -2.4256 -0.2292 10 6 0.1737 -2.4477 -1.0458 11 6 -0.4879 -3.6346 -1.2618 12 6 -0.0293 -4.8061 -0.6789 13 6 1.0983 -4.7962 0.1272 14 6 1.7753 -3.6203 0.3579 15 6 3.0006 -3.6126 1.2352 16 7 2.6214 -3.2337 2.6029 17 6 2.5315 -1.7640 2.7400 18 6 2.9754 -1.4567 4.1657 19 7 2.8923 -0.4616 5.0467 20 6 3.4405 -0.6321 6.1961 21 16 4.1648 -2.1767 6.2809 22 6 3.6416 -2.5228 4.6333 23 6 3.6825 -3.5983 3.5679 24 1 -0.4851 0.8401 0.0004 25 1 -0.1824 -1.5372 -1.5048 26 1 -1.3679 -3.6538 -1.8878 27 1 -0.5551 -5.7331 -0.8536 28 1 1.4469 -5.7147 0.5758 29 1 3.4473 -4.6069 1.2443 30 1 3.7217 -2.8939 0.8459 31 1 3.1958 -1.2777 2.0257 32 1 1.5044 -1.4334 2.5858 33 1 3.4429 0.0961 6.9936 34 1 3.4742 -4.5737 4.0077 35 1 4.6547 -3.6068 3.0749 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001235525562.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:47 Heat of formation + Delta-G solvation = 95.738472 kcal Electronic energy + Delta-G solvation = -20030.853443 eV Core-core repulsion = 17121.110409 eV Total energy + Delta-G solvation = -2909.743033 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 286.083 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.28038 -38.01887 -36.54157 -33.63960 -31.85409 -29.57399 -28.93638 -28.07246 -25.79902 -24.52726 -23.93004 -21.58290 -20.93151 -19.49259 -18.96863 -17.83101 -17.12006 -15.84564 -15.11160 -14.94073 -14.61496 -14.26146 -14.23984 -13.76443 -13.34041 -13.08844 -12.70138 -12.58195 -12.37810 -11.87493 -11.65121 -11.50966 -11.14246 -10.95989 -10.91431 -10.76514 -10.54944 -10.40532 -9.50438 -9.47044 -9.40023 -9.18352 -9.14958 -8.72236 -7.76524 -7.36436 -7.28993 -6.70092 -4.37206 0.88067 1.33421 1.88389 2.78429 2.96088 2.98702 3.10187 3.11312 3.24373 3.94809 3.96979 4.63107 4.75396 4.82120 5.07394 5.52716 5.57915 5.69128 5.80247 5.98399 6.08591 6.24032 6.24412 6.31383 6.34837 6.51217 6.69277 6.81742 7.09041 7.21560 7.26109 7.40610 7.51529 7.62720 7.88796 7.90893 8.01096 8.09103 8.29726 8.61197 8.88763 8.96221 10.24391 Molecular weight = 286.08amu Principal moments of inertia in cm(-1) A = 0.015066 B = 0.006744 C = 0.005011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1858.028663 B = 4150.608941 C = 5585.856982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.797 5.797 2 C 0.080 3.920 3 Si 0.897 3.103 4 H -0.269 1.269 5 H -0.276 1.276 6 H -0.263 1.263 7 C -0.467 4.467 8 H 0.076 0.924 9 C 0.124 3.876 10 C -0.154 4.154 11 C -0.108 4.108 12 C -0.236 4.236 13 C -0.077 4.077 14 C -0.185 4.185 15 C 0.112 3.888 16 N -0.484 5.484 17 C 0.127 3.873 18 C 0.049 3.951 19 N -0.454 5.454 20 C 0.021 3.979 21 S 0.125 5.875 22 C -0.258 4.258 23 C 0.115 3.885 24 H 0.279 0.721 25 H 0.116 0.884 26 H 0.086 0.914 27 H 0.086 0.914 28 H 0.087 0.913 29 H 0.062 0.938 30 H 0.046 0.954 31 H 0.085 0.915 32 H 0.108 0.892 33 H 0.200 0.800 34 H 0.087 0.913 35 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.513 -2.377 8.378 11.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.422 5.422 2 C -0.137 4.137 3 Si 0.722 3.278 4 H -0.195 1.195 5 H -0.201 1.201 6 H -0.187 1.187 7 C -0.497 4.497 8 H 0.093 0.907 9 C 0.121 3.879 10 C -0.174 4.174 11 C -0.126 4.126 12 C -0.255 4.255 13 C -0.096 4.096 14 C -0.187 4.187 15 C -0.014 4.014 16 N -0.209 5.209 17 C -0.003 4.003 18 C -0.082 4.082 19 N -0.166 5.166 20 C -0.278 4.278 21 S 0.377 5.623 22 C -0.379 4.379 23 C -0.015 4.015 24 H 0.090 0.910 25 H 0.134 0.866 26 H 0.104 0.896 27 H 0.104 0.896 28 H 0.105 0.895 29 H 0.081 0.919 30 H 0.064 0.936 31 H 0.102 0.898 32 H 0.127 0.873 33 H 0.216 0.784 34 H 0.105 0.895 35 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 7.090 -2.477 9.189 11.868 hybrid contribution 0.585 1.407 -0.736 1.692 sum 7.675 -1.070 8.453 11.467 Atomic orbital electron populations 1.69775 1.07241 1.28968 1.36264 1.25739 0.94713 1.00656 0.92569 0.86477 0.80682 0.81587 0.79085 1.19457 1.20131 1.18716 1.19443 0.95404 0.90430 1.44410 0.90654 1.17400 0.91199 0.91337 0.87943 1.21304 0.98857 0.96314 1.00912 1.20715 0.98501 0.93663 0.99763 1.20383 1.00879 0.96723 1.07557 1.20341 0.95434 0.95985 0.97803 1.19344 1.00869 0.94472 1.04043 1.20938 0.95755 0.98884 0.85826 1.65724 1.38201 1.11006 1.05938 1.21851 1.04585 0.88391 0.85462 1.22300 0.99059 0.87912 0.98901 1.65278 1.18961 1.31126 1.01282 1.28286 1.01246 0.99873 0.98394 1.83397 1.54317 1.14839 1.09775 1.27157 1.07956 1.04260 0.98515 1.21254 0.95249 0.95315 0.89673 0.90953 0.86563 0.89583 0.89621 0.89457 0.91916 0.93620 0.89770 0.87349 0.78353 0.89493 0.92289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.18 10.96 55.55 0.61 -19.57 16 2 C 0.08 1.95 5.24 -17.34 -0.09 1.86 16 3 Si 0.90 18.79 29.57 -169.99 -5.03 13.76 16 4 H -0.27 -5.57 7.11 56.52 0.40 -5.16 16 5 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 6 H -0.26 -5.50 7.11 56.52 0.40 -5.10 16 7 C -0.47 -11.39 5.57 -37.74 -0.21 -11.60 16 8 H 0.08 1.78 5.35 -52.49 -0.28 1.50 16 9 C 0.12 3.09 5.46 -106.83 -0.58 2.51 16 10 C -0.15 -3.90 8.64 -38.88 -0.34 -4.24 16 11 C -0.11 -2.50 10.02 -39.66 -0.40 -2.90 16 12 C -0.24 -5.22 10.05 -39.29 -0.39 -5.61 16 13 C -0.08 -1.68 9.66 -39.66 -0.38 -2.06 16 14 C -0.19 -4.21 5.41 -103.91 -0.56 -4.77 16 15 C 0.11 2.17 4.72 -4.98 -0.02 2.15 16 16 N -0.48 -9.34 5.42 -235.62 -1.28 -10.62 16 17 C 0.13 2.63 4.93 -3.57 -0.02 2.61 16 18 C 0.05 0.94 7.83 -82.59 -0.65 0.29 16 19 N -0.45 -8.24 10.53 -11.10 -0.12 -8.36 16 20 C 0.02 0.29 12.21 51.36 0.63 0.92 16 21 S 0.12 1.55 23.22 -107.50 -2.50 -0.94 16 22 C -0.26 -4.21 7.55 -35.39 -0.27 -4.47 16 23 C 0.12 1.82 6.54 -4.01 -0.03 1.79 16 24 H 0.28 6.59 8.30 -40.82 -0.34 6.25 16 25 H 0.12 3.05 6.36 -52.49 -0.33 2.71 16 26 H 0.09 1.80 8.06 -52.48 -0.42 1.38 16 27 H 0.09 1.69 8.06 -52.49 -0.42 1.26 16 28 H 0.09 1.69 8.06 -52.49 -0.42 1.27 16 29 H 0.06 1.06 7.89 -51.93 -0.41 0.65 16 30 H 0.05 0.89 6.01 -51.93 -0.31 0.58 16 31 H 0.08 1.80 5.31 -51.93 -0.28 1.52 16 32 H 0.11 2.61 7.74 -51.93 -0.40 2.21 16 33 H 0.20 1.83 8.06 -52.49 -0.42 1.41 16 34 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 35 H 0.06 0.84 7.81 -51.93 -0.41 0.44 16 LS Contribution 300.02 15.07 4.52 4.52 Total: -1.00 -27.65 300.02 -10.77 -38.42 By element: Atomic # 1 Polarization: 9.99 SS G_CDS: -3.67 Total: 6.32 kcal Atomic # 6 Polarization: -20.22 SS G_CDS: -3.31 Total: -23.54 kcal Atomic # 7 Polarization: -37.76 SS G_CDS: -0.79 Total: -38.54 kcal Atomic # 14 Polarization: 18.79 SS G_CDS: -5.03 Total: 13.76 kcal Atomic # 16 Polarization: 1.55 SS G_CDS: -2.50 Total: -0.94 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -27.65 -10.77 -38.42 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235525562.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.157 kcal (2) G-P(sol) polarization free energy of solvation -27.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.419 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds