Wall clock time and date at job start Tue Mar 31 2020 06:00:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38432 * 119.91004 * 2 1 4 4 C 1.38328 * 120.30681 * 180.02562 * 3 2 1 5 5 C 1.50702 * 119.93034 * 179.97438 * 4 3 2 6 6 C 1.38097 * 120.13143 * 0.02562 * 4 3 2 7 7 Cl 1.73605 * 120.08544 * 179.97438 * 6 4 3 8 8 C 1.39708 * 119.82130 * 359.97438 * 6 4 3 9 9 C 1.47963 * 120.14731 * 180.02562 * 8 6 4 10 10 C 1.39946 * 119.88202 * 130.00273 * 9 8 6 11 11 C 1.36249 * 120.11859 * 179.97438 * 10 9 8 12 12 C 1.40930 * 119.87900 * 359.97438 * 11 10 9 13 13 C 1.41021 * 120.11620 * 180.02562 * 12 11 10 14 14 H 1.08000 * 120.00148 * 204.68215 * 13 12 11 15 15 C 1.40007 * 119.99899 * 24.68812 * 13 12 11 16 16 N 1.30798 * 120.00168 * 17.95179 * 15 13 12 17 17 Si 1.86803 * 119.99998 * 197.95157 * 15 13 12 18 18 H 1.48496 * 109.47171 * 59.99901 * 17 15 13 19 19 H 1.48493 * 109.47001 * 180.02562 * 17 15 13 20 20 H 1.48505 * 109.46998 * 299.99913 * 17 15 13 21 21 C 1.40937 * 119.77120 * 0.02562 * 12 11 10 22 22 C 1.36244 * 119.87251 * 0.02562 * 21 12 11 23 23 C 1.37910 * 119.91544 * 180.29248 * 2 1 3 24 24 H 1.09000 * 109.47247 * 90.00664 * 1 2 3 25 25 H 1.09002 * 109.47237 * 210.00138 * 1 2 3 26 26 H 1.09001 * 109.47503 * 330.00610 * 1 2 3 27 27 H 1.08001 * 119.84554 * 0.03237 * 3 2 1 28 28 H 1.08994 * 109.47388 * 270.02145 * 5 4 3 29 29 H 1.09001 * 109.47093 * 30.02858 * 5 4 3 30 30 H 1.09005 * 109.47002 * 150.02196 * 5 4 3 31 31 H 1.07998 * 119.93960 * 0.24839 * 10 9 8 32 32 H 1.08001 * 120.05491 * 180.02562 * 11 10 9 33 33 H 0.96998 * 120.00146 * 179.97438 * 16 15 13 34 34 H 1.07998 * 120.06627 * 179.97438 * 21 12 11 35 35 H 1.08008 * 119.93568 * 179.97438 * 22 21 12 36 36 H 1.08003 * 120.06450 * 359.97438 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1973 1.1999 0.0000 4 6 3.5805 1.2095 -0.0005 5 6 4.3234 2.5207 -0.0011 6 6 4.2820 0.0200 -0.0016 7 17 6.0180 0.0334 -0.0029 8 6 3.5908 -1.1942 -0.0016 9 6 4.3352 -2.4729 -0.0022 10 6 4.0121 -3.4681 0.9272 11 6 4.6941 -4.6477 0.9307 12 6 5.7260 -4.8648 -0.0043 13 6 6.4347 -6.0840 -0.0056 14 1 7.4366 -6.1258 -0.4065 15 6 5.8393 -7.2403 0.5129 16 7 4.5420 -7.2933 0.6711 17 14 6.8978 -8.7073 0.9788 18 1 7.8698 -8.3036 2.0263 19 1 6.0328 -9.7965 1.4987 20 1 7.6322 -9.1881 -0.2191 21 6 6.0472 -3.8592 -0.9381 22 6 5.3597 -2.6830 -0.9322 23 6 2.1948 -1.1953 -0.0061 24 1 -0.3634 -0.0001 -1.0277 25 1 -0.3634 -0.8900 0.5139 26 1 -0.3634 0.8900 0.5137 27 1 1.6533 2.1329 0.0005 28 1 4.5017 2.8368 -1.0288 29 1 3.7285 3.2756 0.5132 30 1 5.2772 2.3981 0.5121 31 1 3.2180 -3.3025 1.6401 32 1 4.4437 -5.4151 1.6481 33 1 4.1295 -8.0945 1.0299 34 1 6.8374 -4.0204 -1.6564 35 1 5.6053 -1.9115 -1.6471 36 1 1.6544 -2.1305 -0.0105 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001236548785.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:25 Heat of formation + Delta-G solvation = 2.717345 kcal Electronic energy + Delta-G solvation = -19154.817474 eV Core-core repulsion = 16206.704285 eV Total energy + Delta-G solvation = -2948.113190 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 286.082 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.67101 -39.15397 -37.31022 -35.82927 -34.24669 -33.57333 -31.44393 -30.74645 -28.20960 -27.42003 -27.00641 -23.66914 -22.88908 -21.41357 -21.29302 -19.30160 -17.71111 -17.20687 -16.79186 -16.45547 -15.76304 -15.41692 -14.90227 -14.75960 -14.39006 -14.23379 -14.05772 -13.94054 -13.64189 -13.48366 -13.29294 -12.99375 -12.96270 -12.79184 -12.64526 -12.36644 -12.15530 -12.03736 -11.97899 -11.70687 -11.32356 -11.19550 -11.06575 -9.83742 -9.45923 -9.35845 -8.93943 -8.69596 -6.35523 0.15827 0.32677 1.01586 1.19463 1.37134 1.38485 1.48553 1.54243 2.18058 2.59799 2.80674 3.69146 3.86632 3.87488 4.01337 4.36698 4.39346 4.42523 4.46280 4.64895 4.69870 4.79498 4.81579 4.88318 4.98877 5.03887 5.09154 5.16945 5.26376 5.32253 5.37744 5.46996 5.49362 5.65531 5.68969 5.91266 6.06334 6.08670 6.19270 6.32270 6.63486 6.87306 6.98780 8.25866 Molecular weight = 286.08amu Principal moments of inertia in cm(-1) A = 0.025058 B = 0.004341 C = 0.003809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1117.127006 B = 6447.976235 C = 7349.995875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.074 4.074 3 C -0.128 4.128 4 C -0.075 4.075 5 C -0.113 4.113 6 C -0.068 4.068 7 Cl -0.077 7.077 8 C -0.003 4.003 9 C -0.196 4.196 10 C -0.078 4.078 11 C -0.193 4.193 12 C 0.091 3.909 13 C -0.493 4.493 14 H 0.078 0.922 15 C 0.037 3.963 16 N -0.815 5.815 17 Si 0.984 3.016 18 H -0.261 1.261 19 H -0.265 1.265 20 H -0.258 1.258 21 C -0.247 4.247 22 C -0.052 4.052 23 C -0.136 4.136 24 H 0.081 0.919 25 H 0.067 0.933 26 H 0.088 0.912 27 H 0.161 0.839 28 H 0.082 0.918 29 H 0.093 0.907 30 H 0.064 0.936 31 H 0.102 0.898 32 H 0.103 0.897 33 H 0.291 0.709 34 H 0.097 0.903 35 H 0.104 0.896 36 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.859 13.948 0.125 15.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.074 4.074 3 C -0.145 4.145 4 C -0.076 4.076 5 C -0.170 4.170 6 C -0.095 4.095 7 Cl -0.048 7.048 8 C -0.004 4.004 9 C -0.197 4.197 10 C -0.096 4.096 11 C -0.212 4.212 12 C 0.088 3.912 13 C -0.521 4.521 14 H 0.096 0.904 15 C -0.179 4.179 16 N -0.440 5.440 17 Si 0.804 3.196 18 H -0.185 1.185 19 H -0.189 1.189 20 H -0.182 1.182 21 C -0.267 4.267 22 C -0.071 4.071 23 C -0.155 4.155 24 H 0.100 0.900 25 H 0.086 0.914 26 H 0.107 0.893 27 H 0.178 0.822 28 H 0.101 0.899 29 H 0.111 0.889 30 H 0.082 0.918 31 H 0.120 0.880 32 H 0.121 0.879 33 H 0.102 0.898 34 H 0.115 0.885 35 H 0.122 0.878 36 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -5.906 13.789 0.188 15.002 hybrid contribution 0.787 -1.206 0.100 1.444 sum -5.119 12.583 0.288 13.587 Atomic orbital electron populations 1.20841 0.88557 1.03868 1.03357 1.20242 0.97882 0.92136 0.97168 1.21157 0.92018 0.98692 1.02677 1.20012 0.94496 0.94159 0.98920 1.20888 1.00135 0.92457 1.03503 1.21127 0.84095 0.94446 1.09804 1.98315 1.10866 1.98633 1.96982 1.18849 0.93358 0.91237 0.96960 1.18199 1.03186 0.94673 1.03666 1.20594 0.98294 0.93124 0.97619 1.20914 1.01648 0.97017 1.01662 1.17998 0.91234 0.92744 0.89211 1.19863 1.01879 0.93729 1.36629 0.90386 1.26818 0.96054 1.03011 0.92042 1.69854 1.11915 1.30412 1.31797 0.85230 0.78702 0.75976 0.79716 1.18503 1.18886 1.18237 1.20818 1.05933 0.96992 1.02914 1.20470 0.94103 0.95620 0.96865 1.21226 0.92035 0.98808 1.03389 0.90007 0.91444 0.89307 0.82185 0.89917 0.88852 0.91751 0.87979 0.87867 0.89786 0.88519 0.87774 0.86179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.96 10.01 71.24 0.71 -1.25 16 2 C -0.07 -1.91 5.87 -19.90 -0.12 -2.03 16 3 C -0.13 -2.97 9.35 22.34 0.21 -2.76 16 4 C -0.08 -2.03 5.88 -19.88 -0.12 -2.15 16 5 C -0.11 -2.28 9.61 71.24 0.68 -1.60 16 6 C -0.07 -2.36 6.28 22.59 0.14 -2.22 16 7 Cl -0.08 -2.68 24.31 -2.72 -0.07 -2.74 16 8 C 0.00 -0.13 5.47 -20.01 -0.11 -0.24 16 9 C -0.20 -8.97 5.14 -19.87 -0.10 -9.07 16 10 C -0.08 -3.79 9.44 22.22 0.21 -3.58 16 11 C -0.19 -10.43 8.63 22.47 0.19 -10.24 16 12 C 0.09 5.03 5.57 -21.28 -0.12 4.91 16 13 C -0.49 -26.88 9.03 23.38 0.21 -26.67 16 14 H 0.08 4.10 7.91 -2.91 -0.02 4.07 16 15 C 0.04 1.87 5.13 85.28 0.44 2.31 16 16 N -0.81 -42.46 10.96 21.84 0.24 -42.22 16 17 Si 0.98 37.94 29.60 68.60 2.03 39.97 16 18 H -0.26 -9.91 7.11 99.48 0.71 -9.20 16 19 H -0.26 -9.56 7.11 99.48 0.71 -8.86 16 20 H -0.26 -9.63 7.11 99.48 0.71 -8.92 16 21 C -0.25 -12.72 9.73 22.47 0.22 -12.50 16 22 C -0.05 -2.47 8.10 22.22 0.18 -2.29 16 23 C -0.14 -4.56 9.16 22.52 0.21 -4.35 16 24 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 25 H 0.07 1.22 8.08 -2.39 -0.02 1.20 16 26 H 0.09 1.17 8.08 -2.39 -0.02 1.15 16 27 H 0.16 2.49 8.06 -2.91 -0.02 2.47 16 28 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 29 H 0.09 1.37 8.08 -2.39 -0.02 1.35 16 30 H 0.06 1.41 6.90 -2.38 -0.02 1.39 16 31 H 0.10 4.52 8.03 -2.91 -0.02 4.50 16 32 H 0.10 5.77 6.16 -2.91 -0.02 5.75 16 33 H 0.29 13.64 8.30 -92.71 -0.77 12.87 16 34 H 0.10 4.73 8.06 -2.91 -0.02 4.70 16 35 H 0.10 4.51 7.14 -2.91 -0.02 4.49 16 36 H 0.12 4.06 8.04 -2.91 -0.02 4.04 16 Total: -1.00 -61.10 317.70 6.13 -54.97 By element: Atomic # 1 Polarization: 22.66 SS G_CDS: 1.08 Total: 23.75 kcal Atomic # 6 Polarization: -76.56 SS G_CDS: 2.84 Total: -73.72 kcal Atomic # 7 Polarization: -42.46 SS G_CDS: 0.24 Total: -42.22 kcal Atomic # 14 Polarization: 37.94 SS G_CDS: 2.03 Total: 39.97 kcal Atomic # 17 Polarization: -2.68 SS G_CDS: -0.07 Total: -2.74 kcal Total: -61.10 6.13 -54.97 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001236548785.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.685 kcal (2) G-P(sol) polarization free energy of solvation -61.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.968 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds