Wall clock time and date at job start Tue Mar 31 2020 06:44:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.46998 * 2 1 4 4 C 1.52996 * 109.47041 * 179.97438 * 3 2 1 5 5 N 1.46504 * 109.47294 * 180.02562 * 4 3 2 6 6 C 1.36935 * 120.00227 * 89.99566 * 5 4 3 7 7 H 1.07996 * 119.99655 * 52.06461 * 6 5 4 8 8 C 1.38808 * 119.99815 * 231.78587 * 6 5 4 9 9 N 1.31623 * 119.99569 * 205.71438 * 8 6 5 10 10 Si 1.86799 * 120.00286 * 25.71470 * 8 6 5 11 11 H 1.48502 * 109.46912 * 54.35792 * 10 8 6 12 12 H 1.48501 * 109.47238 * 174.35679 * 10 8 6 13 13 H 1.48504 * 109.47067 * 294.36103 * 10 8 6 14 14 C 1.46502 * 119.99625 * 269.99949 * 5 4 3 15 15 C 1.50700 * 109.47092 * 274.12159 * 14 5 4 16 16 C 1.38190 * 120.39020 * 96.83767 * 15 14 5 17 17 N 1.31883 * 120.83358 * 179.97438 * 16 15 14 18 18 C 1.31950 * 121.73017 * 0.02562 * 17 16 15 19 19 Cl 1.73601 * 119.65068 * 180.02562 * 18 17 16 20 20 C 1.38586 * 120.69949 * 0.02688 * 18 17 16 21 21 F 1.35099 * 120.44917 * 179.97438 * 20 18 17 22 22 C 1.38648 * 120.39093 * 276.55927 * 15 14 5 23 23 H 1.08996 * 109.47043 * 300.00432 * 1 2 3 24 24 H 1.09003 * 109.46917 * 59.99975 * 1 2 3 25 25 H 1.08997 * 109.46689 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47043 * 239.99568 * 2 1 3 27 27 H 1.09003 * 109.46917 * 120.00025 * 2 1 3 28 28 H 1.09003 * 109.47339 * 59.99576 * 3 2 1 29 29 H 1.09003 * 109.47307 * 299.99786 * 3 2 1 30 30 H 1.08996 * 109.47553 * 59.99993 * 4 3 2 31 31 H 1.09003 * 109.47185 * 299.99587 * 4 3 2 32 32 H 0.97006 * 119.99699 * 179.97438 * 9 8 6 33 33 H 1.08999 * 109.47217 * 34.12267 * 14 5 4 34 34 H 1.08996 * 109.47026 * 154.11952 * 14 5 4 35 35 H 1.07995 * 119.58332 * 359.97438 * 16 15 14 36 36 H 1.07998 * 120.78694 * 0.02562 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0584 2.8237 0.0013 6 6 4.2860 3.4690 1.1874 7 1 4.9051 3.0079 1.9427 8 6 3.7258 4.7181 1.4166 9 7 4.2974 5.5508 2.2606 10 14 2.1607 5.2173 0.5275 11 1 1.1107 4.1934 0.7610 12 1 1.6955 6.5299 1.0432 13 1 2.4316 5.3253 -0.9287 14 6 4.3031 3.5147 -1.2672 15 6 5.6936 3.1958 -1.7528 16 6 5.8967 2.1941 -2.6829 17 7 7.1097 1.9081 -3.1142 18 6 8.1721 2.5593 -2.6803 19 17 9.7439 2.1385 -3.2853 20 6 8.0464 3.5757 -1.7466 21 9 9.1376 4.2389 -1.3054 22 6 6.7835 3.9078 -1.2760 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3632 -1.0277 0.0005 26 1 1.8934 -0.5139 -0.8899 27 1 1.8934 -0.5139 0.8900 28 1 1.6766 1.9564 0.8900 29 1 1.6767 1.9563 -0.8900 30 1 3.9338 0.9286 -0.8891 31 1 3.9330 0.9289 0.8909 32 1 3.9061 6.4240 2.4205 33 1 3.5748 3.1837 -2.0076 34 1 4.2076 4.5903 -1.1194 35 1 5.0515 1.6385 -3.0613 36 1 6.6535 4.6984 -0.5519 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001237405023.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:06 Heat of formation + Delta-G solvation = -14.491642 kcal Electronic energy + Delta-G solvation = -20442.940978 eV Core-core repulsion = 17095.605077 eV Total energy + Delta-G solvation = -3347.335901 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 286.094 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -48.76295 -39.92991 -36.88643 -36.39516 -34.33812 -32.50862 -31.70981 -30.71434 -28.38280 -26.17530 -24.18053 -23.60558 -22.27983 -21.10656 -20.04999 -17.57688 -17.30957 -16.99170 -16.44761 -15.76225 -15.31481 -14.81771 -14.37158 -14.13938 -13.82325 -13.59149 -13.32960 -13.12485 -12.89651 -12.61363 -12.41448 -12.10954 -12.03305 -11.52368 -11.27511 -11.17327 -10.89809 -10.84251 -10.62370 -10.55534 -10.40906 -9.95219 -9.89232 -9.52858 -9.39143 -8.64189 -8.52046 -6.83623 -6.26495 -3.79113 0.98550 1.28727 1.87244 3.20305 3.34807 3.37588 3.70032 4.15026 4.34423 4.60486 4.83055 4.93114 5.05029 5.21798 5.29798 5.40349 5.45169 5.50138 5.70314 5.81863 5.88125 6.06822 6.10579 6.16946 6.21956 6.24824 6.38908 6.43662 6.53782 6.60630 6.73847 6.82386 6.98604 7.77404 7.86309 8.33091 8.78610 9.44929 9.93291 10.86707 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.016158 B = 0.005462 C = 0.004379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1732.474328 B = 5125.221295 C = 6393.301778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.122 4.122 3 C -0.141 4.141 4 C 0.146 3.854 5 N -0.590 5.590 6 C -0.284 4.284 7 H 0.071 0.929 8 C 0.056 3.944 9 N -0.879 5.879 10 Si 0.869 3.131 11 H -0.270 1.270 12 H -0.300 1.300 13 H -0.273 1.273 14 C 0.171 3.829 15 C -0.096 4.096 16 C 0.100 3.900 17 N -0.457 5.457 18 C 0.121 3.879 19 Cl -0.034 7.034 20 C 0.067 3.933 21 F -0.124 7.124 22 C -0.075 4.075 23 H 0.052 0.948 24 H 0.049 0.951 25 H 0.047 0.953 26 H 0.055 0.945 27 H 0.058 0.942 28 H 0.066 0.934 29 H 0.049 0.951 30 H 0.037 0.963 31 H 0.053 0.947 32 H 0.268 0.732 33 H 0.055 0.945 34 H 0.077 0.923 35 H 0.165 0.835 36 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.463 -5.972 -8.823 10.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.160 4.160 3 C -0.181 4.181 4 C 0.021 3.979 5 N -0.310 5.310 6 C -0.413 4.413 7 H 0.089 0.911 8 C -0.149 4.149 9 N -0.515 5.515 10 Si 0.697 3.303 11 H -0.195 1.195 12 H -0.227 1.227 13 H -0.200 1.200 14 C 0.045 3.955 15 C -0.101 4.101 16 C -0.058 4.058 17 N -0.167 5.167 18 C -0.045 4.045 19 Cl -0.006 7.006 20 C 0.044 3.956 21 F -0.102 7.102 22 C -0.102 4.102 23 H 0.071 0.929 24 H 0.068 0.932 25 H 0.066 0.934 26 H 0.074 0.926 27 H 0.077 0.923 28 H 0.085 0.915 29 H 0.068 0.932 30 H 0.056 0.944 31 H 0.072 0.928 32 H 0.078 0.922 33 H 0.073 0.927 34 H 0.095 0.905 35 H 0.182 0.818 36 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 0.747 -6.473 -9.322 11.373 hybrid contribution -0.616 1.096 0.307 1.294 sum 0.131 -5.376 -9.015 10.497 Atomic orbital electron populations 1.21770 0.96698 1.00691 1.01632 1.21494 0.95169 0.97995 1.01348 1.22249 0.98886 0.94980 1.01992 1.21055 0.91266 0.86305 0.99244 1.44077 1.74151 1.11495 1.01311 1.18605 1.27635 1.01268 0.93769 0.91105 1.25820 0.96905 0.96578 0.95592 1.69945 1.37815 1.07047 1.36738 0.87159 0.86288 0.77035 0.79823 1.19484 1.22668 1.19968 1.20436 0.87559 0.98741 0.88793 1.22146 1.00192 0.94400 0.93388 1.22601 0.92670 0.95791 0.94741 1.66965 0.98338 1.25963 1.25450 1.21497 0.89475 0.95940 0.97557 1.98381 1.21534 1.93249 1.87453 1.18319 0.84701 0.94537 0.98051 1.91529 1.51870 1.78901 1.87917 1.21740 0.89009 1.00849 0.98615 0.92921 0.93160 0.93430 0.92639 0.92290 0.91490 0.93242 0.94423 0.92834 0.92235 0.92687 0.90480 0.81811 0.82007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.83 9.91 37.16 0.37 -1.46 16 2 C -0.12 -1.63 5.93 -26.73 -0.16 -1.78 16 3 C -0.14 -2.34 5.54 -26.73 -0.15 -2.49 16 4 C 0.15 2.59 5.69 -4.04 -0.02 2.57 16 5 N -0.59 -12.15 1.73 -174.61 -0.30 -12.45 16 6 C -0.28 -7.07 9.70 -15.06 -0.15 -7.21 16 7 H 0.07 1.99 8.06 -52.49 -0.42 1.56 16 8 C 0.06 1.43 5.10 -17.43 -0.09 1.35 16 9 N -0.88 -24.37 13.97 55.49 0.78 -23.59 16 10 Si 0.87 19.82 26.78 -169.99 -4.55 15.27 16 11 H -0.27 -6.11 6.77 56.52 0.38 -5.73 16 12 H -0.30 -7.08 7.11 56.52 0.40 -6.68 16 13 H -0.27 -5.86 6.07 56.52 0.34 -5.51 16 14 C 0.17 3.15 4.55 -5.19 -0.02 3.12 16 15 C -0.10 -1.63 5.48 -104.49 -0.57 -2.21 16 16 C 0.10 1.55 10.83 -17.55 -0.19 1.36 16 17 N -0.46 -7.56 10.34 -10.31 -0.11 -7.67 16 18 C 0.12 2.02 7.28 -17.37 -0.13 1.89 16 19 Cl -0.03 -0.51 28.78 -51.86 -1.49 -2.00 16 20 C 0.07 1.15 7.31 -39.24 -0.29 0.86 16 21 F -0.12 -2.12 16.86 2.25 0.04 -2.08 16 22 C -0.07 -1.34 9.87 -39.22 -0.39 -1.73 16 23 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 24 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.07 1.28 7.81 -51.93 -0.41 0.88 16 29 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.04 0.59 8.07 -51.93 -0.42 0.17 16 31 H 0.05 0.99 8.04 -51.93 -0.42 0.57 16 32 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 33 H 0.05 0.88 8.01 -51.93 -0.42 0.47 16 34 H 0.08 1.56 5.32 -51.93 -0.28 1.28 16 35 H 0.16 2.06 8.06 -52.49 -0.42 1.64 16 36 H 0.16 3.07 8.06 -52.49 -0.42 2.65 16 LS Contribution 324.16 15.07 4.89 4.89 Total: -1.00 -26.36 324.16 -7.49 -33.85 By element: Atomic # 1 Polarization: 4.48 SS G_CDS: -4.95 Total: -0.47 kcal Atomic # 6 Polarization: -3.95 SS G_CDS: -1.78 Total: -5.74 kcal Atomic # 7 Polarization: -44.08 SS G_CDS: 0.37 Total: -43.72 kcal Atomic # 9 Polarization: -2.12 SS G_CDS: 0.04 Total: -2.08 kcal Atomic # 14 Polarization: 19.82 SS G_CDS: -4.55 Total: 15.27 kcal Atomic # 17 Polarization: -0.51 SS G_CDS: -1.49 Total: -2.00 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -26.36 -7.49 -33.85 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237405023.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.358 kcal (2) G-P(sol) polarization free energy of solvation -26.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds