Wall clock time and date at job start Tue Mar 31 2020 06:44:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.46998 * 2 1 4 4 C 1.52996 * 109.47041 * 179.97438 * 3 2 1 5 5 N 1.46504 * 109.47294 * 180.02562 * 4 3 2 6 6 C 1.36935 * 120.00227 * 89.99566 * 5 4 3 7 7 H 1.07996 * 119.99655 * 52.06461 * 6 5 4 8 8 C 1.38808 * 119.99815 * 231.78587 * 6 5 4 9 9 N 1.31623 * 119.99569 * 205.71438 * 8 6 5 10 10 Si 1.86799 * 120.00286 * 25.71470 * 8 6 5 11 11 H 1.48502 * 109.46912 * 54.35792 * 10 8 6 12 12 H 1.48501 * 109.47238 * 174.35679 * 10 8 6 13 13 H 1.48504 * 109.47067 * 294.36103 * 10 8 6 14 14 C 1.46502 * 119.99625 * 269.99949 * 5 4 3 15 15 C 1.50700 * 109.47092 * 274.12159 * 14 5 4 16 16 C 1.38190 * 120.39020 * 96.83767 * 15 14 5 17 17 N 1.31883 * 120.83358 * 179.97438 * 16 15 14 18 18 C 1.31950 * 121.73017 * 0.02562 * 17 16 15 19 19 Cl 1.73601 * 119.65068 * 180.02562 * 18 17 16 20 20 C 1.38586 * 120.69949 * 0.02688 * 18 17 16 21 21 F 1.35099 * 120.44917 * 179.97438 * 20 18 17 22 22 C 1.38648 * 120.39093 * 276.55927 * 15 14 5 23 23 H 1.08996 * 109.47043 * 300.00432 * 1 2 3 24 24 H 1.09003 * 109.46917 * 59.99975 * 1 2 3 25 25 H 1.08997 * 109.46689 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47043 * 239.99568 * 2 1 3 27 27 H 1.09003 * 109.46917 * 120.00025 * 2 1 3 28 28 H 1.09003 * 109.47339 * 59.99576 * 3 2 1 29 29 H 1.09003 * 109.47307 * 299.99786 * 3 2 1 30 30 H 1.08996 * 109.47553 * 59.99993 * 4 3 2 31 31 H 1.09003 * 109.47185 * 299.99587 * 4 3 2 32 32 H 0.97006 * 119.99699 * 179.97438 * 9 8 6 33 33 H 1.08999 * 109.47217 * 34.12267 * 14 5 4 34 34 H 1.08996 * 109.47026 * 154.11952 * 14 5 4 35 35 H 1.07995 * 119.58332 * 359.97438 * 16 15 14 36 36 H 1.07998 * 120.78694 * 0.02562 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0584 2.8237 0.0013 6 6 4.2860 3.4690 1.1874 7 1 4.9051 3.0079 1.9427 8 6 3.7258 4.7181 1.4166 9 7 4.2974 5.5508 2.2606 10 14 2.1607 5.2173 0.5275 11 1 1.1107 4.1934 0.7610 12 1 1.6955 6.5299 1.0432 13 1 2.4316 5.3253 -0.9287 14 6 4.3031 3.5147 -1.2672 15 6 5.6936 3.1958 -1.7528 16 6 5.8967 2.1941 -2.6829 17 7 7.1097 1.9081 -3.1142 18 6 8.1721 2.5593 -2.6803 19 17 9.7439 2.1385 -3.2853 20 6 8.0464 3.5757 -1.7466 21 9 9.1376 4.2389 -1.3054 22 6 6.7835 3.9078 -1.2760 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3632 -1.0277 0.0005 26 1 1.8934 -0.5139 -0.8899 27 1 1.8934 -0.5139 0.8900 28 1 1.6766 1.9564 0.8900 29 1 1.6767 1.9563 -0.8900 30 1 3.9338 0.9286 -0.8891 31 1 3.9330 0.9289 0.8909 32 1 3.9061 6.4240 2.4205 33 1 3.5748 3.1837 -2.0076 34 1 4.2076 4.5903 -1.1194 35 1 5.0515 1.6385 -3.0613 36 1 6.6535 4.6984 -0.5519 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001237405023.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:05 Heat of formation + Delta-G solvation = -27.313844 kcal Electronic energy + Delta-G solvation = -20443.496990 eV Core-core repulsion = 17095.605077 eV Total energy + Delta-G solvation = -3347.891913 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 286.094 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -50.13174 -41.27044 -38.33703 -37.70648 -35.60320 -34.18072 -33.26978 -32.08608 -29.71315 -27.75661 -25.66429 -24.97656 -23.65175 -22.39422 -21.48061 -19.19240 -18.68193 -18.41166 -17.89825 -17.16966 -16.96274 -16.16640 -15.81596 -15.52264 -15.25398 -14.98779 -14.71476 -14.49755 -14.32042 -14.25666 -13.76250 -13.44534 -13.27891 -12.81896 -12.71377 -12.53563 -12.49169 -12.20837 -12.12053 -11.85043 -11.68942 -11.64301 -11.24214 -10.89923 -10.80303 -10.54594 -9.85414 -8.55279 -8.24822 -5.76532 -0.34473 -0.08002 0.58875 1.38450 1.48738 1.54667 2.35554 2.44295 2.80185 3.05869 3.32799 3.46290 3.52688 3.89068 4.02232 4.20615 4.30382 4.34178 4.44417 4.50301 4.60213 4.79301 4.89917 4.91454 5.05587 5.10132 5.12593 5.20763 5.23895 5.38819 5.43104 5.54951 5.66337 5.94395 6.30822 6.46591 7.05273 7.56933 8.07314 8.92507 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.016158 B = 0.005462 C = 0.004379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1732.474328 B = 5125.221295 C = 6393.301778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.117 4.117 3 C -0.135 4.135 4 C 0.145 3.855 5 N -0.600 5.600 6 C -0.269 4.269 7 H 0.023 0.977 8 C 0.009 3.991 9 N -0.932 5.932 10 Si 0.925 3.075 11 H -0.265 1.265 12 H -0.314 1.314 13 H -0.245 1.245 14 C 0.171 3.829 15 C -0.100 4.100 16 C 0.119 3.881 17 N -0.461 5.461 18 C 0.122 3.878 19 Cl -0.016 7.016 20 C 0.056 3.944 21 F -0.127 7.127 22 C -0.086 4.086 23 H 0.039 0.961 24 H 0.055 0.945 25 H 0.066 0.934 26 H 0.077 0.923 27 H 0.056 0.944 28 H 0.032 0.968 29 H 0.056 0.944 30 H 0.070 0.930 31 H 0.036 0.964 32 H 0.265 0.735 33 H 0.093 0.907 34 H 0.056 0.944 35 H 0.205 0.795 36 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.643 -7.894 -11.797 14.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.155 4.155 3 C -0.174 4.174 4 C 0.021 3.979 5 N -0.321 5.321 6 C -0.399 4.399 7 H 0.041 0.959 8 C -0.191 4.191 9 N -0.572 5.572 10 Si 0.751 3.249 11 H -0.190 1.190 12 H -0.242 1.242 13 H -0.170 1.170 14 C 0.046 3.954 15 C -0.105 4.105 16 C -0.039 4.039 17 N -0.171 5.171 18 C -0.043 4.043 19 Cl 0.012 6.988 20 C 0.034 3.966 21 F -0.106 7.106 22 C -0.113 4.113 23 H 0.058 0.942 24 H 0.074 0.926 25 H 0.085 0.915 26 H 0.096 0.904 27 H 0.075 0.925 28 H 0.051 0.949 29 H 0.075 0.925 30 H 0.089 0.911 31 H 0.054 0.946 32 H 0.074 0.926 33 H 0.111 0.889 34 H 0.074 0.926 35 H 0.221 0.779 36 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -0.350 -8.428 -12.338 14.946 hybrid contribution -0.125 1.602 1.194 2.002 sum -0.475 -6.825 -11.145 13.077 Atomic orbital electron populations 1.21766 0.95765 1.01903 1.01325 1.21455 0.95969 0.95754 1.02322 1.22137 0.97691 0.96975 1.00612 1.21151 0.92199 0.84604 0.99991 1.44128 1.74893 1.12403 1.00657 1.18292 1.25879 1.00938 0.94758 0.95901 1.26342 0.99345 0.96719 0.96735 1.70067 1.39598 1.07674 1.39871 0.86226 0.82462 0.75849 0.80341 1.19026 1.24180 1.16975 1.20431 0.89164 0.97499 0.88350 1.22040 0.99023 0.95076 0.94403 1.23124 0.93375 0.94410 0.92968 1.67137 0.98561 1.25911 1.25480 1.21664 0.90426 0.95313 0.96906 1.98389 1.20301 1.93008 1.87069 1.18325 0.84371 0.95217 0.98714 1.91516 1.51916 1.79069 1.88060 1.21674 0.90119 1.00882 0.98623 0.94155 0.92596 0.91492 0.90429 0.92549 0.94930 0.92495 0.91131 0.94567 0.92628 0.88923 0.92590 0.77889 0.84236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.21 9.91 71.98 0.71 -2.50 16 2 C -0.12 -2.75 5.93 30.60 0.18 -2.57 16 3 C -0.13 -4.13 5.54 30.59 0.17 -3.96 16 4 C 0.14 4.82 5.69 86.38 0.49 5.31 16 5 N -0.60 -24.12 1.73 -706.35 -1.23 -25.34 16 6 C -0.27 -13.80 9.70 84.03 0.82 -12.99 16 7 H 0.02 1.39 8.06 -2.91 -0.02 1.37 16 8 C 0.01 0.45 5.10 84.86 0.43 0.88 16 9 N -0.93 -54.28 13.97 21.65 0.30 -53.98 16 10 Si 0.92 41.12 26.78 68.60 1.84 42.95 16 11 H -0.27 -11.52 6.77 99.48 0.67 -10.85 16 12 H -0.31 -14.62 7.11 99.48 0.71 -13.91 16 13 H -0.25 -9.68 6.07 99.48 0.60 -9.08 16 14 C 0.17 5.89 4.55 85.63 0.39 6.28 16 15 C -0.10 -3.21 5.48 -19.78 -0.11 -3.32 16 16 C 0.12 3.21 10.83 84.67 0.92 4.12 16 17 N -0.46 -13.72 10.34 -186.53 -1.93 -15.65 16 18 C 0.12 3.82 7.28 84.76 0.62 4.44 16 19 Cl -0.02 -0.44 28.78 -2.72 -0.08 -0.52 16 20 C 0.06 1.91 7.31 22.49 0.16 2.07 16 21 F -0.13 -4.35 16.86 44.97 0.76 -3.59 16 22 C -0.09 -3.06 9.87 22.50 0.22 -2.83 16 23 H 0.04 0.94 8.14 -2.39 -0.02 0.93 16 24 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 25 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 26 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 27 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 28 H 0.03 1.21 7.81 -2.39 -0.02 1.19 16 29 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 30 H 0.07 1.89 8.07 -2.39 -0.02 1.87 16 31 H 0.04 1.32 8.04 -2.39 -0.02 1.30 16 32 H 0.26 14.74 8.31 -92.70 -0.77 13.97 16 33 H 0.09 2.51 8.01 -2.39 -0.02 2.50 16 34 H 0.06 2.18 5.32 -2.39 -0.01 2.16 16 35 H 0.20 3.83 8.06 -2.91 -0.02 3.81 16 36 H 0.14 5.58 8.06 -2.91 -0.02 5.55 16 Total: -1.00 -59.24 324.16 5.61 -53.63 By element: Atomic # 1 Polarization: 6.61 SS G_CDS: 0.94 Total: 7.55 kcal Atomic # 6 Polarization: -10.06 SS G_CDS: 5.01 Total: -5.05 kcal Atomic # 7 Polarization: -92.12 SS G_CDS: -2.85 Total: -94.97 kcal Atomic # 9 Polarization: -4.35 SS G_CDS: 0.76 Total: -3.59 kcal Atomic # 14 Polarization: 41.12 SS G_CDS: 1.84 Total: 42.95 kcal Atomic # 17 Polarization: -0.44 SS G_CDS: -0.08 Total: -0.52 kcal Total: -59.24 5.61 -53.63 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237405023.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.315 kcal (2) G-P(sol) polarization free energy of solvation -59.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.629 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds