Wall clock time and date at job start Tue Mar 31 2020 06:44:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52994 * 109.47302 * 2 1 4 4 C 1.52995 * 109.47427 * 184.74728 * 3 2 1 5 5 N 1.46500 * 109.47572 * 183.80197 * 4 3 2 6 6 C 1.36941 * 119.99966 * 84.31281 * 5 4 3 7 7 H 1.07996 * 120.00232 * 321.38837 * 6 5 4 8 8 C 1.38813 * 119.99780 * 141.37956 * 6 5 4 9 9 N 1.31617 * 119.99803 * 159.47745 * 8 6 5 10 10 Si 1.86799 * 120.00268 * 339.48004 * 8 6 5 11 11 H 1.48497 * 109.47293 * 95.26849 * 10 8 6 12 12 H 1.48498 * 109.47226 * 215.27023 * 10 8 6 13 13 H 1.48506 * 109.46848 * 335.27111 * 10 8 6 14 14 C 1.46501 * 120.00133 * 264.32213 * 5 4 3 15 15 C 1.50694 * 109.47424 * 89.99645 * 14 5 4 16 16 C 1.38897 * 120.44094 * 89.99573 * 15 14 5 17 17 F 1.35095 * 120.80966 * 0.02562 * 16 15 14 18 18 C 1.38957 * 118.38135 * 179.97438 * 16 15 14 19 19 C 1.38073 * 119.16349 * 0.02562 * 18 16 15 20 20 N 1.31926 * 120.80449 * 0.02562 * 19 18 16 21 21 C 1.32018 * 121.76897 * 359.67812 * 20 19 18 22 22 Cl 1.73606 * 119.62139 * 180.31479 * 21 20 19 23 23 H 1.08998 * 109.46899 * 180.02562 * 1 2 3 24 24 H 1.09007 * 109.46594 * 299.99314 * 1 2 3 25 25 H 1.08999 * 109.47285 * 59.99499 * 1 2 3 26 26 H 1.08998 * 109.47046 * 240.00338 * 2 1 3 27 27 H 1.08999 * 109.47285 * 120.00501 * 2 1 3 28 28 H 1.09008 * 109.47241 * 64.74527 * 3 2 1 29 29 H 1.08998 * 109.47702 * 304.75070 * 3 2 1 30 30 H 1.08998 * 109.47129 * 63.80152 * 4 3 2 31 31 H 1.09001 * 109.47546 * 303.80210 * 4 3 2 32 32 H 0.97001 * 120.00138 * 179.97438 * 9 8 6 33 33 H 1.09005 * 109.46738 * 209.99397 * 14 5 4 34 34 H 1.08997 * 109.46867 * 329.99359 * 14 5 4 35 35 H 1.08008 * 120.42128 * 180.02562 * 18 16 15 36 36 H 1.08002 * 119.60112 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5653 1.4441 -0.1194 5 7 4.0609 2.8197 -0.0282 6 6 4.2740 3.3908 1.1980 7 1 3.5892 3.1972 2.0103 8 6 5.3706 4.2185 1.3970 9 7 5.3767 5.0735 2.3976 10 14 6.8374 4.1188 0.2447 11 1 6.7053 5.1504 -0.8152 12 1 8.0867 4.3546 1.0121 13 1 6.8862 2.7719 -0.3789 14 6 4.3282 3.5845 -1.2488 15 6 3.0830 4.3277 -1.6589 16 6 2.8430 5.6122 -1.1881 17 9 3.7179 6.2192 -0.3567 18 6 1.6816 6.2582 -1.5940 19 6 0.8113 5.6062 -2.4449 20 7 1.0712 4.3851 -2.8714 21 6 2.1667 3.7419 -2.5122 22 17 2.4570 2.1393 -3.1136 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5139 0.8899 28 1 1.7478 1.9312 0.9295 29 1 1.6089 1.9803 -0.8443 30 1 3.8551 1.0164 -1.0792 31 1 3.9936 0.8495 0.6875 32 1 6.1430 5.6516 2.5369 33 1 5.1318 4.2970 -1.0625 34 1 4.6242 2.9034 -2.0467 35 1 1.4623 7.2577 -1.2483 36 1 -0.0937 6.1015 -2.7645 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001238236075.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:09 Heat of formation + Delta-G solvation = -0.127595 kcal Electronic energy + Delta-G solvation = -21586.401310 eV Core-core repulsion = 18239.688281 eV Total energy + Delta-G solvation = -3346.713029 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 286.094 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -48.37993 -39.82970 -36.81149 -36.27024 -34.28701 -32.22699 -31.46553 -31.01212 -28.40173 -26.10932 -24.10796 -23.17768 -22.34861 -20.86336 -20.26899 -17.73260 -17.30422 -16.92768 -15.65755 -15.16243 -15.00307 -14.82098 -14.66176 -14.07541 -13.89046 -13.69297 -13.61175 -13.20158 -12.89971 -12.50164 -12.24727 -11.96291 -11.51468 -11.42325 -11.37153 -11.05415 -10.63952 -10.63166 -10.50506 -10.40938 -10.09964 -9.83502 -9.70807 -9.51915 -9.04609 -8.64687 -8.54909 -6.92674 -6.07842 -3.50424 1.08547 1.32892 2.04137 3.24618 3.40958 3.45249 3.76132 4.41745 4.44836 4.65725 4.91908 5.00933 5.12000 5.27676 5.39422 5.45816 5.49934 5.59229 5.67350 5.91113 5.96519 6.05250 6.15443 6.23800 6.28943 6.30503 6.36383 6.41099 6.53990 6.61497 6.80675 6.89786 7.08871 7.88412 7.95354 8.32094 8.87338 9.61394 10.00490 11.06615 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.013606 B = 0.009353 C = 0.007011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2057.476211 B = 2993.009220 C = 3992.558024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.119 4.119 3 C -0.142 4.142 4 C 0.150 3.850 5 N -0.588 5.588 6 C -0.273 4.273 7 H 0.079 0.921 8 C 0.051 3.949 9 N -0.885 5.885 10 Si 0.868 3.132 11 H -0.283 1.283 12 H -0.298 1.298 13 H -0.265 1.265 14 C 0.166 3.834 15 C -0.153 4.153 16 C 0.174 3.826 17 F -0.099 7.099 18 C -0.212 4.212 19 C 0.122 3.878 20 N -0.492 5.492 21 C 0.197 3.803 22 Cl -0.026 7.026 23 H 0.046 0.954 24 H 0.050 0.950 25 H 0.050 0.950 26 H 0.053 0.947 27 H 0.056 0.944 28 H 0.058 0.942 29 H 0.057 0.943 30 H 0.041 0.959 31 H 0.054 0.946 32 H 0.265 0.735 33 H 0.069 0.931 34 H 0.064 0.936 35 H 0.147 0.853 36 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.159 -2.454 -9.597 12.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.157 4.157 3 C -0.182 4.182 4 C 0.025 3.975 5 N -0.307 5.307 6 C -0.402 4.402 7 H 0.097 0.903 8 C -0.152 4.152 9 N -0.524 5.524 10 Si 0.697 3.303 11 H -0.211 1.211 12 H -0.226 1.226 13 H -0.190 1.190 14 C 0.039 3.961 15 C -0.161 4.161 16 C 0.146 3.854 17 F -0.077 7.077 18 C -0.233 4.233 19 C -0.035 4.035 20 N -0.204 5.204 21 C 0.033 3.967 22 Cl 0.002 6.998 23 H 0.065 0.935 24 H 0.069 0.931 25 H 0.070 0.930 26 H 0.072 0.928 27 H 0.075 0.925 28 H 0.077 0.923 29 H 0.075 0.925 30 H 0.059 0.941 31 H 0.073 0.927 32 H 0.075 0.925 33 H 0.086 0.914 34 H 0.082 0.918 35 H 0.165 0.835 36 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -7.529 -2.905 -10.002 12.851 hybrid contribution 1.389 0.622 0.192 1.534 sum -6.140 -2.283 -9.810 11.796 Atomic orbital electron populations 1.21747 0.96653 1.00585 1.01587 1.21444 0.95175 0.97993 1.01118 1.22262 0.98740 0.95097 1.02085 1.20993 0.91930 0.85460 0.99152 1.44157 1.76423 1.08684 1.01447 1.18719 1.06564 1.26966 0.87918 0.90310 1.25404 0.97185 0.96732 0.95860 1.69841 1.30414 1.20466 1.31661 0.87068 0.83766 0.78744 0.80692 1.21098 1.22555 1.18993 1.20376 0.90904 0.94477 0.90318 1.21762 1.03340 0.93935 0.97069 1.17675 0.88105 0.90404 0.89235 1.91680 1.66742 1.81788 1.67531 1.22214 0.95195 1.03154 1.02703 1.22280 0.98515 0.89113 0.93588 1.66954 1.18633 1.09545 1.25291 1.21089 0.91622 0.88908 0.95093 1.98368 1.94704 1.19913 1.86794 0.93527 0.93080 0.93046 0.92773 0.92478 0.92291 0.92459 0.94086 0.92715 0.92533 0.91371 0.91765 0.83530 0.81639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.98 9.91 37.16 0.37 -1.61 16 2 C -0.12 -1.75 5.93 -26.73 -0.16 -1.91 16 3 C -0.14 -2.55 5.24 -26.74 -0.14 -2.69 16 4 C 0.15 2.94 5.14 -4.04 -0.02 2.92 16 5 N -0.59 -13.50 2.06 -174.62 -0.36 -13.86 16 6 C -0.27 -7.33 9.92 -15.06 -0.15 -7.47 16 7 H 0.08 2.32 8.06 -52.49 -0.42 1.90 16 8 C 0.05 1.40 5.14 -17.43 -0.09 1.31 16 9 N -0.88 -25.97 13.97 55.49 0.78 -25.20 16 10 Si 0.87 21.53 24.97 -169.99 -4.24 17.29 16 11 H -0.28 -6.88 6.69 56.52 0.38 -6.50 16 12 H -0.30 -7.50 7.11 56.52 0.40 -7.10 16 13 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 14 C 0.17 3.57 4.12 -5.20 -0.02 3.55 16 15 C -0.15 -3.04 5.49 -104.38 -0.57 -3.61 16 16 C 0.17 3.42 7.33 -39.07 -0.29 3.13 16 17 F -0.10 -2.25 16.44 2.25 0.04 -2.22 16 18 C -0.21 -3.25 10.11 -39.38 -0.40 -3.64 16 19 C 0.12 1.73 11.18 -17.57 -0.20 1.53 16 20 N -0.49 -8.18 10.34 -10.40 -0.11 -8.28 16 21 C 0.20 3.53 6.08 -17.47 -0.11 3.42 16 22 Cl -0.03 -0.42 24.02 -51.86 -1.25 -1.67 16 23 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 24 H 0.05 0.69 8.14 -51.92 -0.42 0.26 16 25 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 28 H 0.06 1.19 8.14 -51.92 -0.42 0.77 16 29 H 0.06 1.05 4.89 -51.93 -0.25 0.80 16 30 H 0.04 0.74 6.94 -51.93 -0.36 0.38 16 31 H 0.05 1.09 8.09 -51.93 -0.42 0.67 16 32 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 33 H 0.07 1.61 2.84 -51.93 -0.15 1.46 16 34 H 0.06 1.26 6.62 -51.93 -0.34 0.91 16 35 H 0.15 1.81 8.06 -52.48 -0.42 1.39 16 36 H 0.17 1.63 8.06 -52.49 -0.42 1.21 16 LS Contribution 309.00 15.07 4.66 4.66 Total: -1.00 -29.27 309.00 -6.75 -36.02 By element: Atomic # 1 Polarization: 2.83 SS G_CDS: -4.49 Total: -1.66 kcal Atomic # 6 Polarization: -3.31 SS G_CDS: -1.77 Total: -5.08 kcal Atomic # 7 Polarization: -47.65 SS G_CDS: 0.31 Total: -47.35 kcal Atomic # 9 Polarization: -2.25 SS G_CDS: 0.04 Total: -2.22 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -4.24 Total: 17.29 kcal Atomic # 17 Polarization: -0.42 SS G_CDS: -1.25 Total: -1.67 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -29.27 -6.75 -36.02 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001238236075.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.892 kcal (2) G-P(sol) polarization free energy of solvation -29.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds