Wall clock time and date at job start Tue Mar 31 2020 06:44:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52994 * 109.47302 * 2 1 4 4 C 1.52995 * 109.47427 * 184.74728 * 3 2 1 5 5 N 1.46500 * 109.47572 * 183.80197 * 4 3 2 6 6 C 1.36941 * 119.99966 * 84.31281 * 5 4 3 7 7 H 1.07996 * 120.00232 * 321.38837 * 6 5 4 8 8 C 1.38813 * 119.99780 * 141.37956 * 6 5 4 9 9 N 1.31617 * 119.99803 * 159.47745 * 8 6 5 10 10 Si 1.86799 * 120.00268 * 339.48004 * 8 6 5 11 11 H 1.48497 * 109.47293 * 95.26849 * 10 8 6 12 12 H 1.48498 * 109.47226 * 215.27023 * 10 8 6 13 13 H 1.48506 * 109.46848 * 335.27111 * 10 8 6 14 14 C 1.46501 * 120.00133 * 264.32213 * 5 4 3 15 15 C 1.50694 * 109.47424 * 89.99645 * 14 5 4 16 16 C 1.38897 * 120.44094 * 89.99573 * 15 14 5 17 17 F 1.35095 * 120.80966 * 0.02562 * 16 15 14 18 18 C 1.38957 * 118.38135 * 179.97438 * 16 15 14 19 19 C 1.38073 * 119.16349 * 0.02562 * 18 16 15 20 20 N 1.31926 * 120.80449 * 0.02562 * 19 18 16 21 21 C 1.32018 * 121.76897 * 359.67812 * 20 19 18 22 22 Cl 1.73606 * 119.62139 * 180.31479 * 21 20 19 23 23 H 1.08998 * 109.46899 * 180.02562 * 1 2 3 24 24 H 1.09007 * 109.46594 * 299.99314 * 1 2 3 25 25 H 1.08999 * 109.47285 * 59.99499 * 1 2 3 26 26 H 1.08998 * 109.47046 * 240.00338 * 2 1 3 27 27 H 1.08999 * 109.47285 * 120.00501 * 2 1 3 28 28 H 1.09008 * 109.47241 * 64.74527 * 3 2 1 29 29 H 1.08998 * 109.47702 * 304.75070 * 3 2 1 30 30 H 1.08998 * 109.47129 * 63.80152 * 4 3 2 31 31 H 1.09001 * 109.47546 * 303.80210 * 4 3 2 32 32 H 0.97001 * 120.00138 * 179.97438 * 9 8 6 33 33 H 1.09005 * 109.46738 * 209.99397 * 14 5 4 34 34 H 1.08997 * 109.46867 * 329.99359 * 14 5 4 35 35 H 1.08008 * 120.42128 * 180.02562 * 18 16 15 36 36 H 1.08002 * 119.60112 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5653 1.4441 -0.1194 5 7 4.0609 2.8197 -0.0282 6 6 4.2740 3.3908 1.1980 7 1 3.5892 3.1972 2.0103 8 6 5.3706 4.2185 1.3970 9 7 5.3767 5.0735 2.3976 10 14 6.8374 4.1188 0.2447 11 1 6.7053 5.1504 -0.8152 12 1 8.0867 4.3546 1.0121 13 1 6.8862 2.7719 -0.3789 14 6 4.3282 3.5845 -1.2488 15 6 3.0830 4.3277 -1.6589 16 6 2.8430 5.6122 -1.1881 17 9 3.7179 6.2192 -0.3567 18 6 1.6816 6.2582 -1.5940 19 6 0.8113 5.6062 -2.4449 20 7 1.0712 4.3851 -2.8714 21 6 2.1667 3.7419 -2.5122 22 17 2.4570 2.1393 -3.1136 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5139 0.8899 28 1 1.7478 1.9312 0.9295 29 1 1.6089 1.9803 -0.8443 30 1 3.8551 1.0164 -1.0792 31 1 3.9936 0.8495 0.6875 32 1 6.1430 5.6516 2.5369 33 1 5.1318 4.2970 -1.0625 34 1 4.6242 2.9034 -2.0467 35 1 1.4623 7.2577 -1.2483 36 1 -0.0937 6.1015 -2.7645 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001238236075.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:08 Heat of formation + Delta-G solvation = -17.224912 kcal Electronic energy + Delta-G solvation = -21587.142705 eV Core-core repulsion = 18239.688281 eV Total energy + Delta-G solvation = -3347.454424 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 286.094 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -49.98007 -41.18856 -38.41425 -37.64221 -35.69475 -34.05432 -33.01332 -32.42480 -29.86847 -27.80041 -25.73752 -24.56760 -23.75241 -22.40055 -21.79705 -19.20190 -18.88836 -18.64132 -17.36672 -16.80669 -16.49734 -16.25420 -16.11266 -15.75207 -15.21101 -15.13115 -15.02558 -14.66990 -14.52350 -14.35291 -13.74987 -13.45387 -13.09710 -12.96209 -12.70023 -12.46600 -12.35898 -12.13982 -11.93446 -11.84078 -11.77469 -11.62913 -11.23911 -10.91142 -10.62387 -10.45366 -9.99816 -8.80299 -8.20036 -5.61181 -0.23129 -0.06720 0.70655 1.25981 1.37231 1.46786 2.39330 2.43843 3.03090 3.07161 3.36737 3.46146 3.64256 3.75361 4.08909 4.14167 4.22078 4.29718 4.40550 4.49250 4.55406 4.59342 4.83125 4.85486 4.90450 4.96417 5.04634 5.05508 5.17644 5.38072 5.45453 5.47476 5.60370 5.92689 6.18773 6.58736 6.93765 7.58814 8.01446 8.98720 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.013606 B = 0.009353 C = 0.007011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2057.476211 B = 2993.009220 C = 3992.558024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.115 4.115 3 C -0.129 4.129 4 C 0.147 3.853 5 N -0.600 5.600 6 C -0.258 4.258 7 H 0.038 0.962 8 C 0.007 3.993 9 N -0.933 5.933 10 Si 0.919 3.081 11 H -0.278 1.278 12 H -0.305 1.305 13 H -0.252 1.252 14 C 0.167 3.833 15 C -0.175 4.175 16 C 0.140 3.860 17 F -0.127 7.127 18 C -0.199 4.199 19 C 0.143 3.857 20 N -0.497 5.497 21 C 0.197 3.803 22 Cl -0.012 7.012 23 H 0.069 0.931 24 H 0.043 0.957 25 H 0.049 0.951 26 H 0.069 0.931 27 H 0.059 0.941 28 H 0.026 0.974 29 H 0.055 0.945 30 H 0.062 0.938 31 H 0.045 0.955 32 H 0.262 0.738 33 H 0.046 0.954 34 H 0.083 0.917 35 H 0.179 0.821 36 H 0.220 0.780 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.911 -3.058 -12.182 15.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.153 4.153 3 C -0.169 4.169 4 C 0.023 3.977 5 N -0.321 5.321 6 C -0.387 4.387 7 H 0.056 0.944 8 C -0.191 4.191 9 N -0.575 5.575 10 Si 0.748 3.252 11 H -0.206 1.206 12 H -0.233 1.233 13 H -0.176 1.176 14 C 0.041 3.959 15 C -0.182 4.182 16 C 0.112 3.888 17 F -0.105 7.105 18 C -0.220 4.220 19 C -0.014 4.014 20 N -0.209 5.209 21 C 0.033 3.967 22 Cl 0.016 6.984 23 H 0.088 0.912 24 H 0.062 0.938 25 H 0.069 0.931 26 H 0.088 0.912 27 H 0.078 0.922 28 H 0.045 0.955 29 H 0.074 0.926 30 H 0.081 0.919 31 H 0.064 0.936 32 H 0.071 0.929 33 H 0.064 0.936 34 H 0.101 0.899 35 H 0.197 0.803 36 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges -9.304 -3.537 -12.636 16.086 hybrid contribution 1.746 0.834 0.886 2.128 sum -7.558 -2.703 -11.751 14.231 Atomic orbital electron populations 1.21713 0.95345 1.01987 1.01178 1.21419 0.96302 0.95577 1.02015 1.22094 0.97471 0.97146 1.00184 1.21127 0.92885 0.83847 0.99876 1.44182 1.77106 1.10162 1.00616 1.18428 1.05283 1.26216 0.88792 0.94404 1.25841 0.99249 0.96762 0.97274 1.69951 1.31094 1.22280 1.34173 0.86222 0.80527 0.79342 0.79111 1.20592 1.23315 1.17619 1.20242 0.91325 0.94389 0.89935 1.21580 1.02928 0.94671 0.99058 1.18248 0.89466 0.91199 0.89864 1.91612 1.67969 1.82248 1.68716 1.22617 0.93284 1.04340 1.01742 1.23208 0.99130 0.87928 0.91160 1.67134 1.17840 1.10564 1.25361 1.21129 0.91453 0.89505 0.94609 1.98366 1.94687 1.18882 1.86429 0.91229 0.93821 0.93137 0.91236 0.92201 0.95547 0.92629 0.91929 0.93612 0.92870 0.93644 0.89905 0.80333 0.76381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.53 9.91 71.98 0.71 -2.82 16 2 C -0.12 -3.17 5.93 30.59 0.18 -2.99 16 3 C -0.13 -4.58 5.24 30.59 0.16 -4.42 16 4 C 0.15 5.70 5.14 86.38 0.44 6.14 16 5 N -0.60 -27.82 2.06 -706.36 -1.46 -29.28 16 6 C -0.26 -14.35 9.92 84.03 0.83 -13.51 16 7 H 0.04 2.38 8.06 -2.91 -0.02 2.36 16 8 C 0.01 0.41 5.14 84.86 0.44 0.85 16 9 N -0.93 -57.23 13.97 21.65 0.30 -56.93 16 10 Si 0.92 45.49 24.97 68.60 1.71 47.20 16 11 H -0.28 -13.40 6.69 99.48 0.67 -12.74 16 12 H -0.30 -15.25 7.11 99.48 0.71 -14.55 16 13 H -0.25 -11.77 7.11 99.48 0.71 -11.06 16 14 C 0.17 7.14 4.12 85.63 0.35 7.49 16 15 C -0.18 -6.80 5.49 -19.71 -0.11 -6.90 16 16 C 0.14 5.41 7.33 22.60 0.17 5.58 16 17 F -0.13 -5.89 16.44 44.97 0.74 -5.15 16 18 C -0.20 -5.54 10.11 22.40 0.23 -5.31 16 19 C 0.14 3.39 11.18 84.64 0.95 4.34 16 20 N -0.50 -14.78 10.34 -186.80 -1.93 -16.72 16 21 C 0.20 6.61 6.08 84.66 0.52 7.12 16 22 Cl -0.01 -0.36 24.02 -2.72 -0.07 -0.43 16 23 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 24 H 0.04 1.11 8.14 -2.38 -0.02 1.09 16 25 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 26 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 27 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 28 H 0.03 1.08 8.14 -2.38 -0.02 1.06 16 29 H 0.06 1.97 4.89 -2.39 -0.01 1.96 16 30 H 0.06 2.14 6.94 -2.39 -0.02 2.12 16 31 H 0.05 1.83 8.09 -2.39 -0.02 1.81 16 32 H 0.26 15.38 8.31 -92.71 -0.77 14.61 16 33 H 0.05 2.15 2.84 -2.38 -0.01 2.15 16 34 H 0.08 3.13 6.62 -2.39 -0.02 3.12 16 35 H 0.18 3.75 8.06 -2.91 -0.02 3.73 16 36 H 0.22 2.87 8.06 -2.91 -0.02 2.85 16 Total: -1.00 -66.55 309.00 5.22 -61.33 By element: Atomic # 1 Polarization: 3.36 SS G_CDS: 1.05 Total: 4.41 kcal Atomic # 6 Polarization: -9.30 SS G_CDS: 4.87 Total: -4.44 kcal Atomic # 7 Polarization: -99.84 SS G_CDS: -3.08 Total: -102.92 kcal Atomic # 9 Polarization: -5.89 SS G_CDS: 0.74 Total: -5.15 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 1.71 Total: 47.20 kcal Atomic # 17 Polarization: -0.36 SS G_CDS: -0.07 Total: -0.43 kcal Total: -66.55 5.22 -61.33 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001238236075.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.109 kcal (2) G-P(sol) polarization free energy of solvation -66.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds