Wall clock time and date at job start Tue Mar 31 2020 05:48:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30746 * 1 3 3 Si 1.86800 * 120.00343 * 2 1 4 4 H 1.48493 * 109.47141 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.46858 * 299.99996 * 3 2 1 6 6 H 1.48498 * 109.46714 * 59.99613 * 3 2 1 7 7 C 1.40091 * 119.99804 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00535 * 197.95122 * 7 2 1 9 9 C 1.40987 * 119.99975 * 17.96069 * 7 2 1 10 10 C 1.41007 * 120.09831 * 204.68148 * 9 7 2 11 11 C 1.36197 * 119.93215 * 179.73621 * 10 9 7 12 12 C 1.40019 * 120.13792 * 0.56255 * 11 10 9 13 13 C 1.47811 * 119.89805 * 179.71116 * 12 11 10 14 14 C 1.40059 * 120.46976 * 309.75109 * 13 12 11 15 15 C 1.38185 * 118.36680 * 179.97438 * 14 13 12 16 16 C 1.39528 * 119.20887 * 359.97438 * 15 14 13 17 17 C 1.47995 * 119.56278 * 180.02562 * 16 15 14 18 18 N 1.34771 * 119.99720 * 180.02562 * 17 16 15 19 19 O 1.21543 * 119.99575 * 359.97438 * 17 16 15 20 20 N 1.32856 * 120.87312 * 0.02562 * 16 15 14 21 21 C 1.31280 * 121.78464 * 359.97438 * 20 16 15 22 22 C 1.40210 * 120.19495 * 359.43629 * 12 11 10 23 23 F 1.35101 * 119.96456 * 180.29656 * 22 12 11 24 24 C 1.36476 * 120.06835 * 0.28100 * 22 12 11 25 25 H 0.97001 * 119.99512 * 0.02562 * 1 2 3 26 26 H 1.07995 * 120.03231 * 0.02562 * 10 9 7 27 27 H 1.07995 * 119.93085 * 180.26848 * 11 10 9 28 28 H 1.08004 * 120.81568 * 359.97438 * 14 13 12 29 29 H 1.07997 * 120.38707 * 179.97438 * 15 14 13 30 30 H 0.97002 * 120.00564 * 359.97438 * 18 17 16 31 31 H 0.97008 * 119.99698 * 179.97438 * 18 17 16 32 32 H 1.08002 * 119.64837 * 180.27577 * 21 20 16 33 33 H 1.07998 * 120.07330 * 179.97438 * 24 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2416 1.6177 0.0000 4 1 3.7015 1.3463 0.0006 5 1 1.8828 2.3963 -1.2125 6 1 1.8827 2.3964 1.2125 7 6 2.0079 -1.2133 0.0005 8 1 3.0484 -1.2360 0.2888 9 6 1.3544 -2.4046 -0.3754 10 6 1.8272 -3.6482 0.0918 11 6 1.1901 -4.7966 -0.2692 12 6 0.0738 -4.7459 -1.1128 13 6 -0.6097 -5.9960 -1.5063 14 6 0.1224 -7.0753 -2.0170 15 6 -0.5606 -8.2233 -2.3706 16 6 -1.9457 -8.2689 -2.2080 17 6 -2.6850 -9.4947 -2.5837 18 7 -4.0229 -9.5481 -2.4309 19 8 -2.0855 -10.4528 -3.0310 20 7 -2.6095 -7.2265 -1.7205 21 6 -1.9978 -6.1182 -1.3729 22 6 -0.4011 -3.5124 -1.5806 23 9 -1.4823 -3.4684 -2.3896 24 6 0.2275 -2.3561 -1.2195 25 1 -0.4849 0.8401 -0.0004 26 1 2.6908 -3.6896 0.7390 27 1 1.5497 -5.7487 0.0922 28 1 1.1945 -7.0119 -2.1315 29 1 -0.0286 -9.0750 -2.7681 30 1 -4.5013 -8.7833 -2.0743 31 1 -4.5076 -10.3514 -2.6775 32 1 -2.5711 -5.2934 -0.9760 33 1 -0.1380 -1.4060 -1.5801 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239554166.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:49 Heat of formation + Delta-G solvation = -44.092193 kcal Electronic energy + Delta-G solvation = -20863.493338 eV Core-core repulsion = 17381.473616 eV Total energy + Delta-G solvation = -3482.019722 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 286.086 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -47.87131 -40.25275 -38.64655 -37.49901 -34.35766 -33.70618 -32.30353 -31.54260 -29.37217 -29.20439 -26.12751 -23.85497 -23.17283 -21.52945 -20.94866 -20.34078 -18.10257 -17.89164 -16.97093 -16.28036 -15.81116 -15.68631 -15.05850 -14.93281 -14.76025 -14.67211 -14.40278 -13.88229 -13.35144 -13.13037 -13.00597 -12.76233 -12.51247 -12.21147 -11.85499 -11.38227 -11.24426 -10.99775 -10.60161 -10.30454 -10.26420 -9.97698 -9.72169 -9.69852 -9.48220 -9.31018 -8.79873 -7.75523 -7.52704 -7.15477 -4.75117 0.83078 1.53944 2.31225 2.69293 2.82830 2.88730 2.93750 3.03217 3.50897 3.64699 4.09446 4.27291 4.44300 5.08584 5.21776 5.23406 5.24402 5.39566 5.44311 5.75653 5.97819 6.01989 6.27032 6.40607 6.52615 6.64633 6.72293 6.73211 6.89485 6.90930 7.28025 7.30789 7.39582 7.52954 7.63567 7.88847 8.00350 8.21125 8.30050 8.44439 8.51504 9.74507 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.044370 B = 0.003439 C = 0.003273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 630.905068 B = 8139.389905 C = 8553.479123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.766 5.766 2 C 0.072 3.928 3 Si 0.915 3.085 4 H -0.256 1.256 5 H -0.268 1.268 6 H -0.270 1.270 7 C -0.434 4.434 8 H 0.089 0.911 9 C 0.136 3.864 10 C -0.233 4.233 11 C -0.035 4.035 12 C -0.254 4.254 13 C 0.001 3.999 14 C -0.100 4.100 15 C -0.101 4.101 16 C 0.028 3.972 17 C 0.584 3.416 18 N -0.840 5.840 19 O -0.549 6.549 20 N -0.455 5.455 21 C 0.093 3.907 22 C 0.140 3.860 23 F -0.161 7.161 24 C -0.209 4.209 25 H 0.289 0.711 26 H 0.103 0.897 27 H 0.101 0.899 28 H 0.139 0.861 29 H 0.141 0.859 30 H 0.412 0.588 31 H 0.400 0.600 32 H 0.160 0.840 33 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.773 -6.151 -1.254 6.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.388 5.388 2 C -0.151 4.151 3 Si 0.738 3.262 4 H -0.179 1.179 5 H -0.193 1.193 6 H -0.195 1.195 7 C -0.461 4.461 8 H 0.108 0.892 9 C 0.132 3.868 10 C -0.253 4.253 11 C -0.054 4.054 12 C -0.256 4.256 13 C -0.001 4.001 14 C -0.125 4.125 15 C -0.122 4.122 16 C -0.109 4.109 17 C 0.369 3.631 18 N -0.403 5.403 19 O -0.426 6.426 20 N -0.166 5.166 21 C -0.069 4.069 22 C 0.120 3.880 23 F -0.140 7.140 24 C -0.229 4.229 25 H 0.100 0.900 26 H 0.121 0.879 27 H 0.119 0.881 28 H 0.157 0.843 29 H 0.158 0.842 30 H 0.242 0.758 31 H 0.231 0.769 32 H 0.177 0.823 33 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -3.407 -6.609 -1.456 7.576 hybrid contribution 0.510 1.012 -0.061 1.135 sum -2.897 -5.596 -1.517 6.481 Atomic orbital electron populations 1.69776 1.07957 1.30365 1.30716 1.26142 0.94867 1.02158 0.91885 0.86123 0.81046 0.79954 0.79027 1.17946 1.19258 1.19533 1.19831 0.98559 0.91025 1.36721 0.89246 1.17480 0.89684 0.92473 0.87142 1.20717 1.04408 0.92528 1.07617 1.20161 0.92862 0.97255 0.95118 1.17768 1.04566 0.88914 1.14394 1.20041 0.93903 0.93792 0.92406 1.21748 1.00852 0.92346 0.97577 1.21922 0.93900 0.98721 0.97619 1.20763 0.91859 0.93824 1.04496 1.17916 0.82358 0.86085 0.76716 1.43639 1.07924 1.20927 1.67786 1.90790 1.68646 1.37078 1.46109 1.67338 1.40500 0.99870 1.08912 1.22966 0.92004 0.94471 0.97417 1.17324 0.84768 0.93961 0.91926 1.91361 1.53520 1.97466 1.71626 1.20948 1.01588 0.96098 1.04316 0.89963 0.87891 0.88136 0.84310 0.84154 0.75812 0.76938 0.82317 0.85134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -17.73 10.96 55.55 0.61 -17.12 16 2 C 0.07 1.59 5.13 -17.32 -0.09 1.50 16 3 Si 0.92 16.45 29.60 -169.99 -5.03 11.42 16 4 H -0.26 -4.55 7.11 56.52 0.40 -4.15 16 5 H -0.27 -4.79 7.11 56.52 0.40 -4.39 16 6 H -0.27 -4.80 7.11 56.52 0.40 -4.40 16 7 C -0.43 -10.11 9.03 -37.85 -0.34 -10.45 16 8 H 0.09 1.96 7.91 -52.49 -0.42 1.55 16 9 C 0.14 3.21 5.57 -106.81 -0.60 2.62 16 10 C -0.23 -4.99 9.73 -39.27 -0.38 -5.38 16 11 C -0.04 -0.70 9.46 -39.65 -0.38 -1.08 16 12 C -0.25 -5.19 5.52 -104.57 -0.58 -5.77 16 13 C 0.00 0.02 5.32 -104.65 -0.56 -0.54 16 14 C -0.10 -1.61 9.66 -38.92 -0.38 -1.98 16 15 C -0.10 -1.57 9.61 -39.12 -0.38 -1.94 16 16 C 0.03 0.44 6.75 -82.94 -0.56 -0.12 16 17 C 0.58 8.77 8.08 -12.26 -0.10 8.67 16 18 N -0.84 -9.17 8.86 30.56 0.27 -8.90 16 19 O -0.55 -9.59 17.14 5.33 0.09 -9.50 16 20 N -0.46 -7.45 9.51 -9.46 -0.09 -7.54 16 21 C 0.09 1.63 10.03 -17.13 -0.17 1.45 16 22 C 0.14 3.13 7.11 -39.48 -0.28 2.85 16 23 F -0.16 -3.51 15.88 2.25 0.04 -3.48 16 24 C -0.21 -5.02 8.60 -39.22 -0.34 -5.35 16 25 H 0.29 6.01 8.29 -40.82 -0.34 5.67 16 26 H 0.10 2.02 8.06 -52.49 -0.42 1.60 16 27 H 0.10 1.72 8.04 -52.49 -0.42 1.30 16 28 H 0.14 1.98 8.06 -52.48 -0.42 1.55 16 29 H 0.14 1.98 7.63 -52.49 -0.40 1.58 16 30 H 0.41 4.05 8.14 -40.82 -0.33 3.72 16 31 H 0.40 3.40 8.93 -40.82 -0.36 3.03 16 32 H 0.16 2.72 7.80 -52.49 -0.41 2.31 16 33 H 0.13 3.26 6.16 -52.49 -0.32 2.94 16 LS Contribution 301.91 15.07 4.55 4.55 Total: -1.00 -26.43 301.91 -7.33 -33.76 By element: Atomic # 1 Polarization: 14.96 SS G_CDS: -2.65 Total: 12.31 kcal Atomic # 6 Polarization: -10.40 SS G_CDS: -5.12 Total: -15.51 kcal Atomic # 7 Polarization: -34.35 SS G_CDS: 0.79 Total: -33.56 kcal Atomic # 8 Polarization: -9.59 SS G_CDS: 0.09 Total: -9.50 kcal Atomic # 9 Polarization: -3.51 SS G_CDS: 0.04 Total: -3.48 kcal Atomic # 14 Polarization: 16.45 SS G_CDS: -5.03 Total: 11.42 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -26.43 -7.33 -33.76 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239554166.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.335 kcal (2) G-P(sol) polarization free energy of solvation -26.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds