Wall clock time and date at job start Tue Mar 31 2020 05:48:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30746 * 1 3 3 Si 1.86800 * 120.00343 * 2 1 4 4 H 1.48493 * 109.47141 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.46858 * 299.99996 * 3 2 1 6 6 H 1.48498 * 109.46714 * 59.99613 * 3 2 1 7 7 C 1.40091 * 119.99804 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00535 * 197.95122 * 7 2 1 9 9 C 1.40987 * 119.99975 * 17.96069 * 7 2 1 10 10 C 1.41007 * 120.09831 * 204.68148 * 9 7 2 11 11 C 1.36197 * 119.93215 * 179.73621 * 10 9 7 12 12 C 1.40019 * 120.13792 * 0.56255 * 11 10 9 13 13 C 1.47811 * 119.89805 * 179.71116 * 12 11 10 14 14 C 1.40059 * 120.46976 * 309.75109 * 13 12 11 15 15 C 1.38185 * 118.36680 * 179.97438 * 14 13 12 16 16 C 1.39528 * 119.20887 * 359.97438 * 15 14 13 17 17 C 1.47995 * 119.56278 * 180.02562 * 16 15 14 18 18 N 1.34771 * 119.99720 * 180.02562 * 17 16 15 19 19 O 1.21543 * 119.99575 * 359.97438 * 17 16 15 20 20 N 1.32856 * 120.87312 * 0.02562 * 16 15 14 21 21 C 1.31280 * 121.78464 * 359.97438 * 20 16 15 22 22 C 1.40210 * 120.19495 * 359.43629 * 12 11 10 23 23 F 1.35101 * 119.96456 * 180.29656 * 22 12 11 24 24 C 1.36476 * 120.06835 * 0.28100 * 22 12 11 25 25 H 0.97001 * 119.99512 * 0.02562 * 1 2 3 26 26 H 1.07995 * 120.03231 * 0.02562 * 10 9 7 27 27 H 1.07995 * 119.93085 * 180.26848 * 11 10 9 28 28 H 1.08004 * 120.81568 * 359.97438 * 14 13 12 29 29 H 1.07997 * 120.38707 * 179.97438 * 15 14 13 30 30 H 0.97002 * 120.00564 * 359.97438 * 18 17 16 31 31 H 0.97008 * 119.99698 * 179.97438 * 18 17 16 32 32 H 1.08002 * 119.64837 * 180.27577 * 21 20 16 33 33 H 1.07998 * 120.07330 * 179.97438 * 24 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2416 1.6177 0.0000 4 1 3.7015 1.3463 0.0006 5 1 1.8828 2.3963 -1.2125 6 1 1.8827 2.3964 1.2125 7 6 2.0079 -1.2133 0.0005 8 1 3.0484 -1.2360 0.2888 9 6 1.3544 -2.4046 -0.3754 10 6 1.8272 -3.6482 0.0918 11 6 1.1901 -4.7966 -0.2692 12 6 0.0738 -4.7459 -1.1128 13 6 -0.6097 -5.9960 -1.5063 14 6 0.1224 -7.0753 -2.0170 15 6 -0.5606 -8.2233 -2.3706 16 6 -1.9457 -8.2689 -2.2080 17 6 -2.6850 -9.4947 -2.5837 18 7 -4.0229 -9.5481 -2.4309 19 8 -2.0855 -10.4528 -3.0310 20 7 -2.6095 -7.2265 -1.7205 21 6 -1.9978 -6.1182 -1.3729 22 6 -0.4011 -3.5124 -1.5806 23 9 -1.4823 -3.4684 -2.3896 24 6 0.2275 -2.3561 -1.2195 25 1 -0.4849 0.8401 -0.0004 26 1 2.6908 -3.6896 0.7390 27 1 1.5497 -5.7487 0.0922 28 1 1.1945 -7.0119 -2.1315 29 1 -0.0286 -9.0750 -2.7681 30 1 -4.5013 -8.7833 -2.0743 31 1 -4.5076 -10.3514 -2.6775 32 1 -2.5711 -5.2934 -0.9760 33 1 -0.1380 -1.4060 -1.5801 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239554166.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:48 Heat of formation + Delta-G solvation = -59.845728 kcal Electronic energy + Delta-G solvation = -20864.176462 eV Core-core repulsion = 17381.473616 eV Total energy + Delta-G solvation = -3482.702847 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 286.086 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -49.62105 -41.53770 -39.95389 -39.09643 -35.94842 -34.87416 -33.68665 -32.90252 -31.06276 -30.76927 -27.67566 -25.27843 -24.53344 -23.10581 -22.48252 -21.73344 -19.59235 -19.22462 -18.16192 -17.88427 -17.31841 -17.05433 -16.64365 -16.48135 -16.10887 -16.06730 -15.92791 -15.24820 -14.85433 -14.51816 -14.44935 -14.11042 -14.01953 -13.83940 -13.44109 -12.93287 -12.75340 -12.56716 -12.10345 -11.93430 -11.59950 -11.56395 -11.24023 -10.86481 -10.75497 -10.65644 -10.21650 -9.45569 -9.18140 -8.79230 -6.48673 -0.50294 0.23873 0.71382 0.96840 1.39574 1.45364 1.55647 1.71302 2.15252 2.40012 2.54233 2.86919 3.21768 3.51042 3.72214 3.82314 3.93099 3.98964 4.08011 4.31070 4.47623 4.69343 4.82581 4.94637 4.97677 5.03508 5.15859 5.26600 5.49770 5.61062 5.71248 5.81005 5.85684 5.93507 6.18846 6.26068 6.49836 6.72687 6.74162 6.81244 7.22463 8.14194 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.044370 B = 0.003439 C = 0.003273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 630.905068 B = 8139.389905 C = 8553.479123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.803 5.803 2 C 0.034 3.966 3 Si 0.986 3.014 4 H -0.251 1.251 5 H -0.267 1.267 6 H -0.264 1.264 7 C -0.468 4.468 8 H 0.095 0.905 9 C 0.110 3.890 10 C -0.240 4.240 11 C -0.032 4.032 12 C -0.241 4.241 13 C -0.023 4.023 14 C -0.085 4.085 15 C -0.101 4.101 16 C 0.028 3.972 17 C 0.583 3.417 18 N -0.817 5.817 19 O -0.575 6.575 20 N -0.452 5.452 21 C 0.087 3.913 22 C 0.126 3.874 23 F -0.162 7.162 24 C -0.234 4.234 25 H 0.295 0.705 26 H 0.118 0.882 27 H 0.135 0.865 28 H 0.161 0.839 29 H 0.159 0.841 30 H 0.419 0.581 31 H 0.415 0.585 32 H 0.156 0.844 33 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.475 -7.704 -1.296 8.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.427 5.427 2 C -0.185 4.185 3 Si 0.806 3.194 4 H -0.174 1.174 5 H -0.191 1.191 6 H -0.189 1.189 7 C -0.495 4.495 8 H 0.113 0.887 9 C 0.107 3.893 10 C -0.260 4.260 11 C -0.050 4.050 12 C -0.244 4.244 13 C -0.025 4.025 14 C -0.111 4.111 15 C -0.122 4.122 16 C -0.110 4.110 17 C 0.367 3.633 18 N -0.380 5.380 19 O -0.454 6.454 20 N -0.163 5.163 21 C -0.073 4.073 22 C 0.107 3.893 23 F -0.141 7.141 24 C -0.254 4.254 25 H 0.106 0.894 26 H 0.136 0.864 27 H 0.153 0.847 28 H 0.178 0.822 29 H 0.177 0.823 30 H 0.251 0.749 31 H 0.248 0.752 32 H 0.173 0.827 33 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -3.154 -8.170 -1.489 8.883 hybrid contribution 0.272 1.232 -0.104 1.266 sum -2.882 -6.938 -1.593 7.680 Atomic orbital electron populations 1.69829 1.09419 1.31491 1.31947 1.26966 0.95453 1.05156 0.90876 0.85077 0.79741 0.75571 0.78994 1.17407 1.19128 1.18895 1.20090 0.99040 0.91918 1.38492 0.88741 1.17798 0.90019 0.93846 0.87624 1.20961 1.05033 0.92286 1.07680 1.20496 0.92185 0.98189 0.94156 1.17987 1.04213 0.89050 1.13107 1.19977 0.94277 0.93680 0.94615 1.21949 1.01840 0.91383 0.95892 1.22141 0.93809 0.99061 0.97146 1.21161 0.92573 0.94001 1.03258 1.17817 0.83368 0.85334 0.76830 1.43487 1.06680 1.21807 1.66060 1.90788 1.69394 1.37678 1.47580 1.67367 1.40272 0.99625 1.09052 1.22949 0.91942 0.94858 0.97586 1.17519 0.84903 0.94583 0.92336 1.91344 1.53578 1.97523 1.71681 1.20876 1.02854 0.95890 1.05795 0.89392 0.86381 0.84739 0.82174 0.82346 0.74909 0.75198 0.82662 0.87217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -38.67 10.96 21.85 0.24 -38.43 16 2 C 0.03 1.55 5.13 85.30 0.44 1.99 16 3 Si 0.99 34.12 29.60 68.60 2.03 36.15 16 4 H -0.25 -8.36 7.11 99.48 0.71 -7.65 16 5 H -0.27 -9.06 7.11 99.48 0.71 -8.35 16 6 H -0.26 -8.80 7.11 99.48 0.71 -8.09 16 7 C -0.47 -22.40 9.03 23.39 0.21 -22.19 16 8 H 0.09 4.23 7.91 -2.91 -0.02 4.21 16 9 C 0.11 5.37 5.57 -21.28 -0.12 5.25 16 10 C -0.24 -10.20 9.73 22.47 0.22 -9.98 16 11 C -0.03 -1.22 9.46 22.23 0.21 -1.01 16 12 C -0.24 -9.66 5.52 -19.83 -0.11 -9.77 16 13 C -0.02 -0.81 5.32 -19.88 -0.11 -0.91 16 14 C -0.09 -2.50 9.66 22.70 0.22 -2.28 16 15 C -0.10 -2.84 9.61 22.57 0.22 -2.62 16 16 C 0.03 0.82 6.75 41.89 0.28 1.10 16 17 C 0.58 15.97 8.08 86.83 0.70 16.67 16 18 N -0.82 -15.57 8.86 -175.50 -1.56 -17.13 16 19 O -0.57 -18.68 17.14 -3.85 -0.07 -18.75 16 20 N -0.45 -13.90 9.51 -183.84 -1.75 -15.65 16 21 C 0.09 2.95 10.03 85.20 0.85 3.81 16 22 C 0.13 5.75 7.11 22.34 0.16 5.91 16 23 F -0.16 -7.25 15.88 44.97 0.71 -6.53 16 24 C -0.23 -11.66 8.60 22.50 0.19 -11.47 16 25 H 0.30 12.75 8.29 -92.71 -0.77 11.98 16 26 H 0.12 4.54 8.06 -2.91 -0.02 4.51 16 27 H 0.13 4.16 8.04 -2.91 -0.02 4.14 16 28 H 0.16 3.97 8.06 -2.91 -0.02 3.94 16 29 H 0.16 3.92 7.63 -2.91 -0.02 3.90 16 30 H 0.42 7.10 8.14 -92.71 -0.76 6.34 16 31 H 0.42 5.83 8.93 -92.70 -0.83 5.00 16 32 H 0.16 5.29 7.80 -2.91 -0.02 5.27 16 33 H 0.11 5.83 6.16 -2.91 -0.02 5.81 16 Total: -1.00 -57.44 301.91 2.60 -54.84 By element: Atomic # 1 Polarization: 31.39 SS G_CDS: -0.39 Total: 31.00 kcal Atomic # 6 Polarization: -28.88 SS G_CDS: 3.37 Total: -25.50 kcal Atomic # 7 Polarization: -68.14 SS G_CDS: -3.06 Total: -71.21 kcal Atomic # 8 Polarization: -18.68 SS G_CDS: -0.07 Total: -18.75 kcal Atomic # 9 Polarization: -7.25 SS G_CDS: 0.71 Total: -6.53 kcal Atomic # 14 Polarization: 34.12 SS G_CDS: 2.03 Total: 36.15 kcal Total: -57.44 2.60 -54.84 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239554166.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.004 kcal (2) G-P(sol) polarization free energy of solvation -57.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds