Wall clock time and date at job start Tue Mar 31 2020 05:43:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30849 * 1 3 3 Si 1.86802 * 119.99960 * 2 1 4 4 H 1.48492 * 109.47300 * 240.00413 * 3 2 1 5 5 H 1.48496 * 109.46931 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.46532 * 120.00260 * 3 2 1 7 7 C 1.39936 * 119.99877 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99294 * 197.79725 * 7 2 1 9 9 C 1.41309 * 119.99853 * 17.79140 * 7 2 1 10 10 C 1.40770 * 120.21082 * 24.66892 * 9 7 2 11 11 C 1.37644 * 120.04525 * 179.97438 * 10 9 7 12 12 C 1.38472 * 120.46035 * 0.02562 * 11 10 9 13 13 C 1.39632 * 120.41879 * 359.72156 * 12 11 10 14 14 C 1.48235 * 120.02970 * 180.30127 * 13 12 11 15 15 C 1.39789 * 120.44457 * 309.95757 * 14 13 12 16 16 C 1.38269 * 118.38718 * 179.79752 * 15 14 13 17 17 C 1.39466 * 119.18695 * 0.45665 * 16 15 14 18 18 C 1.47999 * 119.59265 * 179.76149 * 17 16 15 19 19 N 1.34772 * 120.00306 * 180.02562 * 18 17 16 20 20 O 1.21537 * 119.99932 * 0.02562 * 18 17 16 21 21 N 1.32804 * 120.81377 * 359.78371 * 17 16 15 22 22 C 1.31332 * 121.76685 * 359.97438 * 21 17 16 23 23 C 1.39195 * 119.94266 * 0.53818 * 13 12 11 24 24 F 1.35107 * 120.22469 * 179.74365 * 23 13 12 25 25 H 0.97001 * 120.00329 * 359.97438 * 1 2 3 26 26 H 1.08003 * 119.97774 * 359.96792 * 10 9 7 27 27 H 1.07997 * 119.77228 * 180.02562 * 11 10 9 28 28 H 1.08011 * 119.78902 * 180.02562 * 12 11 10 29 29 H 1.08003 * 120.80469 * 0.02562 * 15 14 13 30 30 H 1.08001 * 120.40332 * 180.21856 * 16 15 14 31 31 H 0.97004 * 119.99484 * 0.02562 * 19 18 17 32 32 H 0.96995 * 120.00361 * 179.97438 * 19 18 17 33 33 H 1.08003 * 119.62984 * 179.97438 * 22 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2425 1.6178 0.0000 4 1 3.0961 1.6965 -1.2125 5 1 1.2775 2.7464 0.0006 6 1 3.0963 1.6963 1.2126 7 6 2.0081 -1.2119 -0.0005 8 1 3.0494 -1.2343 0.2853 9 6 1.3522 -2.4062 -0.3750 10 6 0.2233 -2.3610 -1.2148 11 6 -0.4126 -3.5265 -1.5778 12 6 0.0495 -4.7497 -1.1221 13 6 1.1707 -4.8174 -0.2926 14 6 1.6620 -6.1319 0.1849 15 6 0.7817 -7.0476 0.7687 16 6 1.2848 -8.2628 1.1952 17 6 2.6450 -8.5285 1.0388 18 6 3.1940 -9.8242 1.4970 19 7 4.5072 -10.0894 1.3504 20 8 2.4606 -10.6492 2.0056 21 7 3.4536 -7.6329 0.4841 22 6 3.0122 -6.4701 0.0625 23 6 1.8237 -3.6490 0.0897 24 9 2.9060 -3.7075 0.8963 25 1 -0.4851 0.8400 0.0004 26 1 -0.1441 -1.4112 -1.5744 27 1 -1.2781 -3.4867 -2.2226 28 1 -0.4576 -5.6575 -1.4141 29 1 -0.2666 -6.8130 0.8804 30 1 0.6331 -8.9957 1.6475 31 1 5.0926 -9.4308 0.9448 32 1 4.8671 -10.9385 1.6510 33 1 3.7005 -5.7672 -0.3831 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239556479.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:39 Heat of formation + Delta-G solvation = -41.325156 kcal Electronic energy + Delta-G solvation = -20999.744424 eV Core-core repulsion = 17517.844690 eV Total energy + Delta-G solvation = -3481.899734 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 286.086 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -47.45949 -40.40289 -38.74810 -37.36954 -34.30672 -33.75800 -32.41660 -31.66380 -29.84745 -28.50494 -25.55896 -24.55537 -23.32907 -21.48480 -20.82265 -20.44104 -18.19637 -17.58955 -17.08727 -16.22567 -15.93678 -15.49394 -15.29835 -14.99995 -14.80640 -14.50844 -14.17416 -13.92185 -13.36519 -13.22787 -13.08584 -12.90301 -12.19687 -12.04562 -11.71935 -11.41910 -11.20444 -11.01304 -10.65763 -10.40397 -10.11324 -9.88650 -9.77235 -9.68789 -9.47549 -9.36427 -8.96831 -7.69320 -7.44882 -6.99368 -4.60066 0.69592 1.40703 2.39070 2.50713 2.89035 2.96393 2.98778 3.05964 3.40791 3.77845 4.02944 4.31803 4.34777 4.98213 5.01881 5.12385 5.15639 5.32840 5.54201 5.65747 5.86741 6.07072 6.14680 6.30522 6.39549 6.59590 6.66455 6.78566 6.88322 6.97409 7.22620 7.25368 7.35585 7.68388 7.75805 7.84006 7.89645 8.20623 8.31908 8.54212 8.61104 9.93905 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.032043 B = 0.003802 C = 0.003517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 873.623842 B = 7362.193225 C = 7958.359890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.786 5.786 2 C 0.077 3.923 3 Si 0.914 3.086 4 H -0.261 1.261 5 H -0.276 1.276 6 H -0.263 1.263 7 C -0.452 4.452 8 H 0.085 0.915 9 C 0.085 3.915 10 C -0.136 4.136 11 C -0.111 4.111 12 C -0.197 4.197 13 C -0.075 4.075 14 C -0.031 4.031 15 C -0.081 4.081 16 C -0.106 4.106 17 C 0.045 3.955 18 C 0.584 3.416 19 N -0.838 5.838 20 O -0.545 6.545 21 N -0.458 5.458 22 C 0.110 3.890 23 C -0.007 4.007 24 F -0.156 7.156 25 H 0.286 0.714 26 H 0.128 0.872 27 H 0.099 0.901 28 H 0.100 0.900 29 H 0.144 0.856 30 H 0.145 0.855 31 H 0.412 0.588 32 H 0.402 0.598 33 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.360 -8.254 -1.064 8.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.411 5.411 2 C -0.143 4.143 3 Si 0.738 3.262 4 H -0.185 1.185 5 H -0.201 1.201 6 H -0.187 1.187 7 C -0.480 4.480 8 H 0.103 0.897 9 C 0.082 3.918 10 C -0.155 4.155 11 C -0.129 4.129 12 C -0.216 4.216 13 C -0.076 4.076 14 C -0.033 4.033 15 C -0.106 4.106 16 C -0.127 4.127 17 C -0.093 4.093 18 C 0.368 3.632 19 N -0.401 5.401 20 O -0.422 6.422 21 N -0.169 5.169 22 C -0.051 4.051 23 C -0.027 4.027 24 F -0.135 7.135 25 H 0.097 0.903 26 H 0.146 0.854 27 H 0.118 0.882 28 H 0.118 0.882 29 H 0.161 0.839 30 H 0.162 0.838 31 H 0.243 0.757 32 H 0.232 0.768 33 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 3.475 -8.748 -0.776 9.445 hybrid contribution -0.008 1.050 0.194 1.068 sum 3.467 -7.698 -0.582 8.463 Atomic orbital electron populations 1.69786 1.07681 1.29978 1.33610 1.25933 0.94794 1.01628 0.91907 0.86246 0.80135 0.79491 0.80315 1.18530 1.20110 1.18735 1.19513 0.98502 0.90879 1.39136 0.89720 1.17540 0.92717 0.90606 0.90915 1.21308 0.97785 0.97518 0.98929 1.20666 0.99220 0.92710 1.00325 1.20236 0.98647 0.96957 1.05807 1.18132 0.98444 0.88685 1.02378 1.20208 0.94227 0.94367 0.94476 1.21735 1.00816 0.92252 0.95800 1.21973 0.95249 0.97410 0.98081 1.20875 0.91629 0.94660 1.02113 1.17885 0.82409 0.85459 0.77460 1.43635 1.09464 1.22361 1.64664 1.90803 1.58942 1.47839 1.44630 1.67412 1.38386 1.02486 1.08595 1.22924 0.93598 0.92351 0.96222 1.17800 0.90672 0.93646 1.00623 1.91294 1.53170 1.97169 1.71884 0.90317 0.85441 0.88250 0.88173 0.83863 0.83752 0.75744 0.76791 0.81863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -18.81 10.96 55.55 0.61 -18.20 16 2 C 0.08 1.80 5.14 -17.33 -0.09 1.71 16 3 Si 0.91 17.58 29.60 -169.99 -5.03 12.55 16 4 H -0.26 -4.96 7.11 56.52 0.40 -4.56 16 5 H -0.28 -5.14 7.11 56.52 0.40 -4.74 16 6 H -0.26 -5.07 7.11 56.52 0.40 -4.67 16 7 C -0.45 -11.36 8.78 -37.78 -0.33 -11.70 16 8 H 0.08 2.10 7.74 -52.49 -0.41 1.70 16 9 C 0.09 2.13 5.57 -106.80 -0.60 1.53 16 10 C -0.14 -3.18 8.69 -38.84 -0.34 -3.52 16 11 C -0.11 -2.28 10.01 -39.71 -0.40 -2.68 16 12 C -0.20 -3.88 9.53 -38.97 -0.37 -4.25 16 13 C -0.07 -1.54 5.49 -104.91 -0.58 -2.12 16 14 C -0.03 -0.55 5.33 -104.65 -0.56 -1.11 16 15 C -0.08 -1.27 9.65 -38.99 -0.38 -1.64 16 16 C -0.11 -1.59 9.61 -39.11 -0.38 -1.97 16 17 C 0.04 0.69 6.75 -82.99 -0.56 0.13 16 18 C 0.58 8.39 8.08 -12.26 -0.10 8.29 16 19 N -0.84 -8.66 8.86 30.56 0.27 -8.39 16 20 O -0.55 -9.20 17.14 5.33 0.09 -9.11 16 21 N -0.46 -7.19 9.51 -9.54 -0.09 -7.28 16 22 C 0.11 1.86 10.04 -17.21 -0.17 1.69 16 23 C -0.01 -0.17 7.17 -38.25 -0.27 -0.44 16 24 F -0.16 -3.64 15.35 2.25 0.03 -3.61 16 25 H 0.29 6.19 8.30 -40.82 -0.34 5.86 16 26 H 0.13 3.05 6.16 -52.48 -0.32 2.73 16 27 H 0.10 1.78 8.06 -52.49 -0.42 1.36 16 28 H 0.10 1.72 8.04 -52.48 -0.42 1.30 16 29 H 0.14 2.01 8.06 -52.48 -0.42 1.59 16 30 H 0.14 1.94 7.63 -52.49 -0.40 1.54 16 31 H 0.41 3.81 8.15 -40.82 -0.33 3.47 16 32 H 0.40 3.19 8.93 -40.82 -0.36 2.83 16 33 H 0.16 2.69 7.79 -52.48 -0.41 2.28 16 LS Contribution 301.42 15.07 4.54 4.54 Total: -1.00 -27.56 301.42 -7.32 -34.89 By element: Atomic # 1 Polarization: 13.31 SS G_CDS: -2.64 Total: 10.68 kcal Atomic # 6 Polarization: -10.96 SS G_CDS: -5.11 Total: -16.07 kcal Atomic # 7 Polarization: -34.66 SS G_CDS: 0.79 Total: -33.87 kcal Atomic # 8 Polarization: -9.20 SS G_CDS: 0.09 Total: -9.11 kcal Atomic # 9 Polarization: -3.64 SS G_CDS: 0.03 Total: -3.61 kcal Atomic # 14 Polarization: 17.58 SS G_CDS: -5.03 Total: 12.55 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -27.56 -7.32 -34.89 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239556479.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.436 kcal (2) G-P(sol) polarization free energy of solvation -27.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds