Wall clock time and date at job start Tue Mar 31 2020 05:43:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30849 * 1 3 3 Si 1.86802 * 119.99960 * 2 1 4 4 H 1.48492 * 109.47300 * 240.00413 * 3 2 1 5 5 H 1.48496 * 109.46931 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.46532 * 120.00260 * 3 2 1 7 7 C 1.39936 * 119.99877 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99294 * 197.79725 * 7 2 1 9 9 C 1.41309 * 119.99853 * 17.79140 * 7 2 1 10 10 C 1.40770 * 120.21082 * 24.66892 * 9 7 2 11 11 C 1.37644 * 120.04525 * 179.97438 * 10 9 7 12 12 C 1.38472 * 120.46035 * 0.02562 * 11 10 9 13 13 C 1.39632 * 120.41879 * 359.72156 * 12 11 10 14 14 C 1.48235 * 120.02970 * 180.30127 * 13 12 11 15 15 C 1.39789 * 120.44457 * 309.95757 * 14 13 12 16 16 C 1.38269 * 118.38718 * 179.79752 * 15 14 13 17 17 C 1.39466 * 119.18695 * 0.45665 * 16 15 14 18 18 C 1.47999 * 119.59265 * 179.76149 * 17 16 15 19 19 N 1.34772 * 120.00306 * 180.02562 * 18 17 16 20 20 O 1.21537 * 119.99932 * 0.02562 * 18 17 16 21 21 N 1.32804 * 120.81377 * 359.78371 * 17 16 15 22 22 C 1.31332 * 121.76685 * 359.97438 * 21 17 16 23 23 C 1.39195 * 119.94266 * 0.53818 * 13 12 11 24 24 F 1.35107 * 120.22469 * 179.74365 * 23 13 12 25 25 H 0.97001 * 120.00329 * 359.97438 * 1 2 3 26 26 H 1.08003 * 119.97774 * 359.96792 * 10 9 7 27 27 H 1.07997 * 119.77228 * 180.02562 * 11 10 9 28 28 H 1.08011 * 119.78902 * 180.02562 * 12 11 10 29 29 H 1.08003 * 120.80469 * 0.02562 * 15 14 13 30 30 H 1.08001 * 120.40332 * 180.21856 * 16 15 14 31 31 H 0.97004 * 119.99484 * 0.02562 * 19 18 17 32 32 H 0.96995 * 120.00361 * 179.97438 * 19 18 17 33 33 H 1.08003 * 119.62984 * 179.97438 * 22 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2425 1.6178 0.0000 4 1 3.0961 1.6965 -1.2125 5 1 1.2775 2.7464 0.0006 6 1 3.0963 1.6963 1.2126 7 6 2.0081 -1.2119 -0.0005 8 1 3.0494 -1.2343 0.2853 9 6 1.3522 -2.4062 -0.3750 10 6 0.2233 -2.3610 -1.2148 11 6 -0.4126 -3.5265 -1.5778 12 6 0.0495 -4.7497 -1.1221 13 6 1.1707 -4.8174 -0.2926 14 6 1.6620 -6.1319 0.1849 15 6 0.7817 -7.0476 0.7687 16 6 1.2848 -8.2628 1.1952 17 6 2.6450 -8.5285 1.0388 18 6 3.1940 -9.8242 1.4970 19 7 4.5072 -10.0894 1.3504 20 8 2.4606 -10.6492 2.0056 21 7 3.4536 -7.6329 0.4841 22 6 3.0122 -6.4701 0.0625 23 6 1.8237 -3.6490 0.0897 24 9 2.9060 -3.7075 0.8963 25 1 -0.4851 0.8400 0.0004 26 1 -0.1441 -1.4112 -1.5744 27 1 -1.2781 -3.4867 -2.2226 28 1 -0.4576 -5.6575 -1.4141 29 1 -0.2666 -6.8130 0.8804 30 1 0.6331 -8.9957 1.6475 31 1 5.0926 -9.4308 0.9448 32 1 4.8671 -10.9385 1.6510 33 1 3.7005 -5.7672 -0.3831 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239556479.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:38 Heat of formation + Delta-G solvation = -58.329014 kcal Electronic energy + Delta-G solvation = -21000.481767 eV Core-core repulsion = 17517.844690 eV Total energy + Delta-G solvation = -3482.637077 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 286.086 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -49.25118 -41.63787 -39.98973 -38.99638 -35.93346 -34.91442 -33.76988 -32.97274 -31.57135 -30.01612 -27.31854 -25.88808 -24.62939 -22.95058 -22.45859 -21.81338 -19.37782 -19.18615 -18.25127 -17.95531 -17.26369 -17.03311 -16.86845 -16.24781 -16.07992 -15.98366 -15.89842 -15.32817 -14.81199 -14.63956 -14.50494 -14.18075 -13.80380 -13.69317 -13.30312 -13.13503 -12.79276 -12.61004 -12.18688 -11.81757 -11.61271 -11.53172 -11.13384 -10.98207 -10.77653 -10.72778 -10.31759 -9.43197 -9.10090 -8.72232 -6.44318 -0.59863 0.15723 0.77435 0.82072 1.38026 1.47251 1.50666 1.66675 2.18139 2.34177 2.59758 2.79475 3.14164 3.45053 3.63278 3.82187 3.91022 3.96810 4.00855 4.24245 4.50742 4.63897 4.73203 4.90563 4.93223 5.03624 5.15178 5.25493 5.46377 5.56834 5.67214 5.78034 5.97303 5.98516 6.12209 6.22801 6.52263 6.65218 6.75170 6.83548 7.19457 8.23054 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.032043 B = 0.003802 C = 0.003517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 873.623842 B = 7362.193225 C = 7958.359890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.814 5.814 2 C 0.042 3.958 3 Si 0.981 3.019 4 H -0.258 1.258 5 H -0.262 1.262 6 H -0.265 1.265 7 C -0.494 4.494 8 H 0.071 0.929 9 C 0.057 3.943 10 C -0.157 4.157 11 C -0.107 4.107 12 C -0.186 4.186 13 C -0.066 4.066 14 C -0.056 4.056 15 C -0.070 4.070 16 C -0.104 4.104 17 C 0.043 3.957 18 C 0.582 3.418 19 N -0.816 5.816 20 O -0.572 6.572 21 N -0.454 5.454 22 C 0.104 3.896 23 C -0.036 4.036 24 F -0.164 7.164 25 H 0.294 0.706 26 H 0.115 0.885 27 H 0.130 0.870 28 H 0.136 0.864 29 H 0.163 0.837 30 H 0.163 0.837 31 H 0.420 0.580 32 H 0.416 0.584 33 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.041 -9.665 -1.260 10.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.439 5.439 2 C -0.175 4.175 3 Si 0.801 3.199 4 H -0.182 1.182 5 H -0.186 1.186 6 H -0.189 1.189 7 C -0.523 4.523 8 H 0.090 0.910 9 C 0.054 3.946 10 C -0.177 4.177 11 C -0.125 4.125 12 C -0.205 4.205 13 C -0.067 4.067 14 C -0.058 4.058 15 C -0.095 4.095 16 C -0.125 4.125 17 C -0.095 4.095 18 C 0.366 3.634 19 N -0.379 5.379 20 O -0.451 6.451 21 N -0.165 5.165 22 C -0.056 4.056 23 C -0.056 4.056 24 F -0.143 7.143 25 H 0.105 0.895 26 H 0.133 0.867 27 H 0.148 0.852 28 H 0.153 0.847 29 H 0.181 0.819 30 H 0.181 0.819 31 H 0.252 0.748 32 H 0.249 0.751 33 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 3.189 -10.176 -0.985 10.710 hybrid contribution 0.096 1.253 0.257 1.282 sum 3.285 -8.924 -0.728 9.537 Atomic orbital electron populations 1.69810 1.08738 1.31181 1.34173 1.26662 0.95540 1.04247 0.91007 0.85260 0.78926 0.75625 0.80055 1.18241 1.18592 1.18908 1.19661 0.98350 0.92489 1.41806 0.91046 1.17881 0.93693 0.91324 0.91679 1.21300 0.98265 0.98226 0.99861 1.21014 0.99548 0.92072 0.99876 1.20672 0.97886 0.97912 1.04033 1.18359 0.97897 0.89071 1.01400 1.20120 0.95065 0.93846 0.96754 1.21917 1.01407 0.91721 0.94456 1.22181 0.95355 0.97403 0.97571 1.21251 0.92130 0.94958 1.01152 1.17783 0.83355 0.84792 0.77501 1.43489 1.08196 1.23102 1.63114 1.90799 1.59818 1.48380 1.46107 1.67438 1.38260 1.02088 1.08666 1.22902 0.93415 0.92804 0.96448 1.18085 0.91389 0.94476 1.01689 1.91255 1.53613 1.97226 1.72212 0.89539 0.86700 0.85167 0.84660 0.81930 0.81917 0.74839 0.75091 0.82183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -39.89 10.96 21.83 0.24 -39.65 16 2 C 0.04 2.03 5.14 85.25 0.44 2.46 16 3 Si 0.98 36.70 29.60 68.60 2.03 38.73 16 4 H -0.26 -9.44 7.11 99.48 0.71 -8.73 16 5 H -0.26 -9.08 7.11 99.48 0.71 -8.38 16 6 H -0.26 -9.86 7.11 99.48 0.71 -9.15 16 7 C -0.49 -26.07 8.78 23.44 0.21 -25.86 16 8 H 0.07 3.78 7.74 -2.91 -0.02 3.76 16 9 C 0.06 2.95 5.57 -21.28 -0.12 2.83 16 10 C -0.16 -7.49 8.69 22.75 0.20 -7.29 16 11 C -0.11 -4.27 10.01 22.19 0.22 -4.05 16 12 C -0.19 -6.93 9.53 22.66 0.22 -6.71 16 13 C -0.07 -2.66 5.49 -20.05 -0.11 -2.77 16 14 C -0.06 -1.92 5.33 -19.88 -0.11 -2.02 16 15 C -0.07 -2.01 9.65 22.65 0.22 -1.79 16 16 C -0.10 -2.85 9.61 22.57 0.22 -2.63 16 17 C 0.04 1.23 6.75 41.88 0.28 1.51 16 18 C 0.58 15.38 8.08 86.83 0.70 16.08 16 19 N -0.82 -14.79 8.86 -175.50 -1.56 -16.35 16 20 O -0.57 -18.04 17.14 -3.83 -0.07 -18.10 16 21 N -0.45 -13.51 9.51 -184.09 -1.75 -15.26 16 22 C 0.10 3.46 10.04 85.13 0.85 4.31 16 23 C -0.04 -1.74 7.17 23.13 0.17 -1.57 16 24 F -0.16 -7.94 15.35 44.97 0.69 -7.25 16 25 H 0.29 12.90 8.30 -92.71 -0.77 12.14 16 26 H 0.12 5.68 6.16 -2.91 -0.02 5.67 16 27 H 0.13 4.33 8.06 -2.91 -0.02 4.30 16 28 H 0.14 4.10 8.04 -2.90 -0.02 4.07 16 29 H 0.16 4.01 8.06 -2.91 -0.02 3.98 16 30 H 0.16 3.86 7.63 -2.91 -0.02 3.84 16 31 H 0.42 6.71 8.15 -92.71 -0.76 5.95 16 32 H 0.42 5.49 8.93 -92.71 -0.83 4.66 16 33 H 0.16 5.31 7.79 -2.91 -0.02 5.29 16 Total: -1.00 -60.57 301.42 2.58 -57.99 By element: Atomic # 1 Polarization: 27.78 SS G_CDS: -0.39 Total: 27.40 kcal Atomic # 6 Polarization: -30.88 SS G_CDS: 3.38 Total: -27.50 kcal Atomic # 7 Polarization: -68.19 SS G_CDS: -3.07 Total: -71.26 kcal Atomic # 8 Polarization: -18.04 SS G_CDS: -0.07 Total: -18.10 kcal Atomic # 9 Polarization: -7.94 SS G_CDS: 0.69 Total: -7.25 kcal Atomic # 14 Polarization: 36.70 SS G_CDS: 2.03 Total: 38.73 kcal Total: -60.57 2.58 -57.99 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239556479.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.340 kcal (2) G-P(sol) polarization free energy of solvation -60.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.989 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds