Wall clock time and date at job start Tue Mar 31 2020 05:50:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30717 * 1 3 3 Si 1.86795 * 119.99962 * 2 1 4 4 H 1.48498 * 109.47517 * 274.65640 * 3 2 1 5 5 H 1.48508 * 109.47125 * 34.65163 * 3 2 1 6 6 H 1.48496 * 109.47496 * 154.64939 * 3 2 1 7 7 C 1.40151 * 120.00271 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00463 * 163.61141 * 7 2 1 9 9 C 1.40830 * 119.99740 * 343.61115 * 7 2 1 10 10 C 1.40721 * 120.31966 * 333.52666 * 9 7 2 11 11 C 1.37653 * 119.84902 * 179.97438 * 10 9 7 12 12 F 1.35100 * 119.74856 * 179.97438 * 11 10 9 13 13 C 1.39203 * 120.51407 * 0.02562 * 11 10 9 14 14 C 1.37994 * 120.66041 * 359.71550 * 13 11 10 15 15 C 1.39225 * 120.12526 * 0.56320 * 14 13 11 16 16 C 1.47699 * 120.25455 * 179.72080 * 15 14 13 17 17 C 1.40118 * 120.46742 * 309.74468 * 16 15 14 18 18 C 1.38162 * 118.36241 * 179.97438 * 17 16 15 19 19 C 1.39550 * 119.21603 * 359.97438 * 18 17 16 20 20 C 1.47966 * 119.56345 * 180.02562 * 19 18 17 21 21 N 1.34771 * 120.00090 * 179.97438 * 20 19 18 22 22 O 1.21546 * 119.99622 * 0.02562 * 20 19 18 23 23 N 1.32871 * 120.87393 * 359.97438 * 19 18 17 24 24 C 1.31263 * 121.79777 * 0.02562 * 23 19 18 25 25 H 0.96996 * 120.00246 * 359.97438 * 1 2 3 26 26 H 1.08002 * 120.07625 * 359.95664 * 10 9 7 27 27 H 1.08006 * 119.67212 * 180.02562 * 13 11 10 28 28 H 1.07997 * 119.93628 * 180.28138 * 14 13 11 29 29 H 1.08000 * 120.81715 * 359.97438 * 17 16 15 30 30 H 1.07993 * 120.39113 * 179.97438 * 18 17 16 31 31 H 0.97003 * 120.00491 * 0.02562 * 21 20 19 32 32 H 0.96999 * 120.00189 * 179.97438 * 21 20 19 33 33 H 1.07997 * 119.65507 * 180.27180 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3072 0.0000 0.0000 3 14 2.2411 1.6177 0.0000 4 1 2.3903 2.1033 -1.3954 5 1 1.4912 2.6223 0.7961 6 1 3.5844 1.4139 0.5994 7 6 2.0080 -1.2137 -0.0005 8 1 3.0550 -1.2326 -0.2644 9 6 1.3468 -2.4087 0.3431 10 6 0.2230 -2.3807 1.1896 11 6 -0.4163 -3.5545 1.5187 12 9 -1.4947 -3.5253 2.3320 13 6 0.0404 -4.7717 1.0209 14 6 1.1371 -4.8231 0.1850 15 6 1.8077 -3.6530 -0.1608 16 6 2.9856 -3.7054 -1.0503 17 6 4.0344 -4.5968 -0.7886 18 6 5.1150 -4.6098 -1.6494 19 6 5.1256 -3.7422 -2.7424 20 6 6.2788 -3.7501 -3.6695 21 7 6.2980 -2.9163 -4.7282 22 8 7.2082 -4.5093 -3.4769 23 7 4.1135 -2.9099 -2.9621 24 6 3.0689 -2.8665 -2.1684 25 1 -0.4850 0.8400 0.0004 26 1 -0.1370 -1.4404 1.5803 27 1 -0.4718 -5.6844 1.2877 28 1 1.4787 -5.7733 -0.1980 29 1 3.9991 -5.2575 0.0651 30 1 5.9416 -5.2834 -1.4785 31 1 5.5560 -2.3107 -4.8822 32 1 7.0541 -2.9212 -5.3358 33 1 2.2636 -2.1795 -2.3822 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239561223.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:51 Heat of formation + Delta-G solvation = -45.159130 kcal Electronic energy + Delta-G solvation = -21242.890879 eV Core-core repulsion = 17760.824891 eV Total energy + Delta-G solvation = -3482.065988 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 286.086 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -47.83809 -40.14420 -38.63438 -37.34391 -34.07128 -33.66343 -32.26280 -31.47027 -30.00066 -28.31631 -25.88316 -24.15353 -22.96912 -21.49520 -21.01107 -20.07009 -18.01379 -17.78943 -16.86065 -16.15529 -15.90489 -15.39530 -15.09019 -14.83410 -14.71100 -14.51615 -14.46362 -13.74294 -13.25173 -13.07623 -12.92880 -12.63901 -12.38835 -12.14819 -11.83609 -11.41668 -11.29907 -10.93268 -10.63281 -10.32300 -10.18080 -9.93753 -9.60060 -9.49893 -9.43447 -9.15957 -8.60200 -7.86096 -7.40795 -7.09002 -4.76149 0.98826 1.72736 2.37266 2.54778 2.91438 2.93410 2.99550 3.10574 3.63644 3.68379 4.21686 4.35081 4.61925 5.15679 5.26831 5.41432 5.42964 5.46118 5.57477 5.84856 6.10153 6.13644 6.23669 6.42812 6.60630 6.67433 6.74304 6.83245 6.89464 7.12171 7.20643 7.39505 7.43768 7.49719 7.60522 7.87013 8.17687 8.21046 8.43560 8.44572 8.49814 9.78365 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.014530 B = 0.005873 C = 0.004369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1926.583972 B = 4766.758599 C = 6406.603606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.771 5.771 2 C 0.077 3.923 3 Si 0.909 3.091 4 H -0.265 1.265 5 H -0.272 1.272 6 H -0.257 1.257 7 C -0.442 4.442 8 H 0.088 0.912 9 C 0.151 3.849 10 C -0.194 4.194 11 C 0.114 3.886 12 F -0.165 7.165 13 C -0.277 4.277 14 C -0.036 4.036 15 C -0.207 4.207 16 C 0.009 3.991 17 C -0.107 4.107 18 C -0.104 4.104 19 C 0.026 3.974 20 C 0.584 3.416 21 N -0.841 5.841 22 O -0.552 6.552 23 N -0.461 5.461 24 C 0.112 3.888 25 H 0.289 0.711 26 H 0.131 0.869 27 H 0.104 0.896 28 H 0.102 0.898 29 H 0.135 0.865 30 H 0.137 0.863 31 H 0.412 0.588 32 H 0.399 0.601 33 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.349 -1.371 -3.994 6.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.394 5.394 2 C -0.145 4.145 3 Si 0.732 3.268 4 H -0.189 1.189 5 H -0.197 1.197 6 H -0.181 1.181 7 C -0.470 4.470 8 H 0.106 0.894 9 C 0.148 3.852 10 C -0.214 4.214 11 C 0.095 3.905 12 F -0.144 7.144 13 C -0.297 4.297 14 C -0.055 4.055 15 C -0.209 4.209 16 C 0.006 3.994 17 C -0.132 4.132 18 C -0.125 4.125 19 C -0.110 4.110 20 C 0.370 3.630 21 N -0.403 5.403 22 O -0.430 6.430 23 N -0.173 5.173 24 C -0.049 4.049 25 H 0.100 0.900 26 H 0.149 0.851 27 H 0.122 0.878 28 H 0.120 0.880 29 H 0.153 0.847 30 H 0.155 0.845 31 H 0.242 0.758 32 H 0.229 0.771 33 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 4.687 -1.210 -4.457 6.580 hybrid contribution -0.134 0.552 0.601 0.827 sum 4.553 -0.658 -3.856 6.003 Atomic orbital electron populations 1.69737 1.07822 1.30363 1.31495 1.26037 0.94772 1.01817 0.91825 0.86251 0.80871 0.80025 0.79655 1.18935 1.19673 1.18078 1.19650 0.97949 0.90622 1.38741 0.89407 1.17219 0.89428 0.91109 0.87427 1.21248 1.00665 0.96045 1.03416 1.17797 0.85102 0.95233 0.92387 1.91353 1.53977 1.97599 1.71434 1.20216 1.03982 0.95381 1.10093 1.20394 0.94055 0.95942 0.95070 1.18416 1.00839 0.94141 1.07497 1.20003 0.93395 0.92574 0.93401 1.21746 0.92588 0.99551 0.99330 1.21856 0.98794 0.98159 0.93722 1.20739 0.95144 0.98103 0.97058 1.17954 0.85159 0.79419 0.80509 1.43644 1.25902 1.42099 1.28673 1.90779 1.37030 1.40820 1.74329 1.67409 1.00764 1.19108 1.29971 1.23144 0.94882 0.97248 0.89675 0.89981 0.85098 0.87813 0.87961 0.84690 0.84487 0.75760 0.77079 0.81265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -17.58 11.00 55.56 0.61 -16.97 16 2 C 0.08 1.69 5.15 -17.31 -0.09 1.61 16 3 Si 0.91 16.78 29.59 -169.99 -5.03 11.75 16 4 H -0.26 -4.83 7.11 56.52 0.40 -4.42 16 5 H -0.27 -4.95 7.11 56.52 0.40 -4.55 16 6 H -0.26 -4.83 7.11 56.52 0.40 -4.43 16 7 C -0.44 -10.03 7.14 -37.88 -0.27 -10.30 16 8 H 0.09 1.97 6.62 -52.49 -0.35 1.62 16 9 C 0.15 3.50 5.56 -106.57 -0.59 2.91 16 10 C -0.19 -4.59 8.64 -38.86 -0.34 -4.93 16 11 C 0.11 2.57 7.28 -39.44 -0.29 2.28 16 12 F -0.16 -3.62 17.26 2.25 0.04 -3.59 16 13 C -0.28 -5.69 10.01 -39.31 -0.39 -6.08 16 14 C -0.04 -0.71 9.52 -39.30 -0.37 -1.09 16 15 C -0.21 -4.32 5.54 -104.25 -0.58 -4.90 16 16 C 0.01 0.16 4.93 -104.66 -0.52 -0.35 16 17 C -0.11 -1.79 9.68 -38.90 -0.38 -2.16 16 18 C -0.10 -1.70 9.61 -39.12 -0.38 -2.08 16 19 C 0.03 0.44 6.75 -82.94 -0.56 -0.12 16 20 C 0.58 9.26 8.08 -12.28 -0.10 9.16 16 21 N -0.84 -9.90 8.86 30.56 0.27 -9.63 16 22 O -0.55 -10.08 17.14 5.33 0.09 -9.98 16 23 N -0.46 -7.99 9.51 -9.45 -0.09 -8.08 16 24 C 0.11 2.08 9.17 -17.12 -0.16 1.92 16 25 H 0.29 5.99 8.29 -40.82 -0.34 5.65 16 26 H 0.13 3.23 6.26 -52.49 -0.33 2.90 16 27 H 0.10 1.91 8.06 -52.48 -0.42 1.49 16 28 H 0.10 1.73 8.05 -52.49 -0.42 1.31 16 29 H 0.14 1.99 8.06 -52.49 -0.42 1.57 16 30 H 0.14 2.04 7.63 -52.49 -0.40 1.64 16 31 H 0.41 4.45 8.14 -40.82 -0.33 4.11 16 32 H 0.40 3.71 8.93 -40.82 -0.36 3.35 16 33 H 0.17 3.24 7.32 -52.49 -0.38 2.85 16 LS Contribution 299.08 15.07 4.51 4.51 Total: -1.00 -25.87 299.08 -7.16 -33.03 By element: Atomic # 1 Polarization: 15.66 SS G_CDS: -2.56 Total: 13.10 kcal Atomic # 6 Polarization: -9.13 SS G_CDS: -5.00 Total: -14.13 kcal Atomic # 7 Polarization: -35.47 SS G_CDS: 0.79 Total: -34.68 kcal Atomic # 8 Polarization: -10.08 SS G_CDS: 0.09 Total: -9.98 kcal Atomic # 9 Polarization: -3.62 SS G_CDS: 0.04 Total: -3.59 kcal Atomic # 14 Polarization: 16.78 SS G_CDS: -5.03 Total: 11.75 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -25.87 -7.16 -33.03 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239561223.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.129 kcal (2) G-P(sol) polarization free energy of solvation -25.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds