Wall clock time and date at job start Tue Mar 31 2020 05:48:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30860 * 1 3 3 Si 1.86793 * 120.00289 * 2 1 4 4 H 1.48503 * 109.47352 * 240.00231 * 3 2 1 5 5 H 1.48504 * 109.46997 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47567 * 120.00093 * 3 2 1 7 7 C 1.39906 * 119.99840 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99798 * 162.95847 * 7 2 1 9 9 C 1.41349 * 119.99967 * 342.96263 * 7 2 1 10 10 C 1.40864 * 120.15104 * 334.62434 * 9 7 2 11 11 C 1.37554 * 120.03937 * 179.97438 * 10 9 7 12 12 C 1.38751 * 120.35635 * 359.97438 * 11 10 9 13 13 F 1.35102 * 119.84652 * 179.97438 * 12 11 10 14 14 C 1.40059 * 120.31029 * 0.02562 * 12 11 10 15 15 C 1.48237 * 120.02648 * 180.02562 * 14 12 11 16 16 C 1.39790 * 120.44473 * 310.01830 * 15 14 12 17 17 C 1.38269 * 118.38615 * 179.97438 * 16 15 14 18 18 C 1.39458 * 119.18852 * 0.02562 * 17 16 15 19 19 C 1.48017 * 119.59407 * 180.02562 * 18 17 16 20 20 N 1.34777 * 120.00033 * 179.97438 * 19 18 17 21 21 O 1.21534 * 119.99498 * 0.02562 * 19 18 17 22 22 N 1.32810 * 120.81738 * 359.97438 * 18 17 16 23 23 C 1.31328 * 121.76168 * 0.02562 * 22 18 17 24 24 C 1.38770 * 119.94620 * 0.27293 * 14 12 11 25 25 H 0.97000 * 119.99983 * 359.97438 * 1 2 3 26 26 H 1.07996 * 119.97874 * 359.95802 * 10 9 7 27 27 H 1.07995 * 119.81995 * 179.97438 * 11 10 9 28 28 H 1.07999 * 120.80490 * 359.96287 * 16 15 14 29 29 H 1.08004 * 120.40761 * 179.97438 * 17 16 15 30 30 H 0.96995 * 120.00138 * 0.02562 * 20 19 18 31 31 H 0.96995 * 119.99815 * 179.97438 * 20 19 18 32 32 H 1.08004 * 119.62832 * 180.27915 * 23 22 18 33 33 H 1.08006 * 120.17381 * 179.72404 * 24 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2426 1.6176 0.0000 4 1 3.0964 1.6963 -1.2125 5 1 1.2777 2.7464 -0.0006 6 1 3.0964 1.6963 1.2124 7 6 2.0081 -1.2116 0.0005 8 1 3.0525 -1.2323 -0.2736 9 6 1.3478 -2.4087 0.3597 10 6 0.2176 -2.3688 1.1996 11 6 -0.4235 -3.5351 1.5472 12 6 0.0364 -4.7558 1.0745 13 9 -0.6008 -5.8950 1.4229 14 6 1.1588 -4.8127 0.2386 15 6 1.6443 -6.1203 -0.2633 16 6 1.8523 -7.1846 0.6187 17 6 2.3054 -8.3855 0.1045 18 6 2.5385 -8.4938 -1.2662 19 6 3.0231 -9.7753 -1.8263 20 7 3.2505 -9.8892 -3.1499 21 8 3.2149 -10.7251 -1.0928 22 7 2.3301 -7.4615 -2.0754 23 6 1.9003 -6.3054 -1.6244 24 6 1.8190 -3.6445 -0.1152 25 1 -0.4850 0.8400 0.0004 26 1 -0.1456 -1.4219 1.5709 27 1 -1.2894 -3.5004 2.1917 28 1 1.6638 -7.0716 1.6761 29 1 2.4775 -9.2292 0.7565 30 1 3.0971 -9.1312 -3.7353 31 1 3.5684 -10.7289 -3.5168 32 1 1.7382 -5.4901 -2.3141 33 1 2.6875 -3.6845 -0.7559 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239561437.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:23 Heat of formation + Delta-G solvation = -42.387502 kcal Electronic energy + Delta-G solvation = -20859.832359 eV Core-core repulsion = 17377.886558 eV Total energy + Delta-G solvation = -3481.945801 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 286.086 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -47.70295 -40.40997 -38.76185 -37.43826 -34.18128 -33.72900 -32.45109 -31.72784 -29.89416 -28.65395 -25.31863 -24.51364 -23.41915 -21.41785 -21.05363 -20.43534 -18.20657 -17.61551 -17.07326 -16.43534 -15.86745 -15.52464 -15.10574 -15.03729 -14.92734 -14.67561 -14.32425 -13.91151 -13.34389 -13.25931 -12.96661 -12.88859 -12.17914 -12.07611 -11.93039 -11.49490 -11.26443 -10.99842 -10.62461 -10.40139 -10.17363 -9.89048 -9.77924 -9.73942 -9.43105 -9.36447 -8.96422 -7.78257 -7.45745 -7.00867 -4.60038 0.69125 1.40805 2.36665 2.50266 2.88475 2.95543 2.96766 3.02072 3.40149 3.76098 4.02218 4.30456 4.31179 4.98783 5.01055 5.12986 5.18341 5.32625 5.53086 5.58065 5.85298 5.97370 6.15454 6.34426 6.50794 6.62648 6.66599 6.75356 6.84864 6.96180 7.15019 7.23106 7.37859 7.60454 7.71355 7.83884 7.92228 8.20125 8.29530 8.58462 8.61168 9.94172 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.025589 B = 0.003810 C = 0.003438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1093.939725 B = 7346.423251 C = 8141.429502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.789 5.789 2 C 0.075 3.925 3 Si 0.912 3.088 4 H -0.264 1.264 5 H -0.277 1.277 6 H -0.262 1.262 7 C -0.455 4.455 8 H 0.083 0.917 9 C 0.102 3.898 10 C -0.131 4.131 11 C -0.128 4.128 12 C -0.024 4.024 13 F -0.167 7.167 14 C -0.069 4.069 15 C -0.032 4.032 16 C -0.075 4.075 17 C -0.105 4.105 18 C 0.045 3.955 19 C 0.583 3.417 20 N -0.838 5.838 21 O -0.545 6.545 22 N -0.459 5.459 23 C 0.105 3.895 24 C -0.182 4.182 25 H 0.285 0.715 26 H 0.129 0.871 27 H 0.105 0.895 28 H 0.142 0.858 29 H 0.145 0.855 30 H 0.412 0.588 31 H 0.402 0.598 32 H 0.167 0.833 33 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.028 -7.010 -3.016 8.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.413 5.413 2 C -0.144 4.144 3 Si 0.736 3.264 4 H -0.188 1.188 5 H -0.202 1.202 6 H -0.186 1.186 7 C -0.483 4.483 8 H 0.101 0.899 9 C 0.100 3.900 10 C -0.150 4.150 11 C -0.147 4.147 12 C -0.044 4.044 13 F -0.147 7.147 14 C -0.070 4.070 15 C -0.034 4.034 16 C -0.100 4.100 17 C -0.126 4.126 18 C -0.092 4.092 19 C 0.368 3.632 20 N -0.401 5.401 21 O -0.422 6.422 22 N -0.170 5.170 23 C -0.055 4.055 24 C -0.201 4.201 25 H 0.097 0.903 26 H 0.147 0.853 27 H 0.123 0.877 28 H 0.160 0.840 29 H 0.162 0.838 30 H 0.242 0.758 31 H 0.232 0.768 32 H 0.184 0.816 33 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 3.041 -7.536 -3.313 8.776 hybrid contribution -0.028 0.852 0.457 0.967 sum 3.013 -6.684 -2.857 7.869 Atomic orbital electron populations 1.69784 1.07649 1.29934 1.33943 1.25949 0.94803 1.01613 0.92016 0.86283 0.80129 0.79752 0.80200 1.18806 1.20181 1.18638 1.19566 0.98020 0.90871 1.39872 0.89920 1.17562 0.91373 0.91969 0.89121 1.21336 0.98167 0.96491 0.98996 1.20652 1.00597 0.91615 1.01877 1.17235 0.97784 0.81498 1.07916 1.91303 1.81868 1.49838 1.91649 1.18161 0.96790 0.91212 1.00880 1.20202 0.94712 0.94257 0.94253 1.21745 0.95874 0.91524 1.00895 1.21968 0.96956 0.98546 0.95151 1.20870 1.03433 0.93452 0.91448 1.17890 0.76361 0.86484 0.82496 1.43632 1.69598 1.18427 1.08479 1.90804 1.52755 1.39181 1.59414 1.67415 1.10797 0.99790 1.38950 1.22946 0.95213 0.94006 0.93373 1.20936 1.02941 0.90860 1.05395 0.90349 0.85342 0.87655 0.84047 0.83767 0.75756 0.76791 0.81572 0.87473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -18.46 10.96 55.55 0.61 -17.85 16 2 C 0.08 1.70 5.14 -17.34 -0.09 1.61 16 3 Si 0.91 16.97 29.59 -169.99 -5.03 11.94 16 4 H -0.26 -4.87 7.11 56.52 0.40 -4.46 16 5 H -0.28 -5.06 7.11 56.52 0.40 -4.65 16 6 H -0.26 -4.86 7.11 56.52 0.40 -4.46 16 7 C -0.45 -10.76 9.04 -37.77 -0.34 -11.10 16 8 H 0.08 1.87 7.90 -52.49 -0.41 1.45 16 9 C 0.10 2.43 5.56 -106.86 -0.59 1.83 16 10 C -0.13 -3.04 8.68 -38.84 -0.34 -3.38 16 11 C -0.13 -2.79 9.99 -39.64 -0.40 -3.19 16 12 C -0.02 -0.52 7.20 -38.71 -0.28 -0.80 16 13 F -0.17 -3.47 15.91 2.25 0.04 -3.44 16 14 C -0.07 -1.41 5.49 -104.91 -0.58 -1.99 16 15 C -0.03 -0.57 5.32 -104.65 -0.56 -1.13 16 16 C -0.07 -1.22 8.99 -38.99 -0.35 -1.57 16 17 C -0.11 -1.61 9.61 -39.12 -0.38 -1.98 16 18 C 0.05 0.70 6.75 -82.98 -0.56 0.14 16 19 C 0.58 8.35 8.08 -12.25 -0.10 8.25 16 20 N -0.84 -8.55 8.86 30.57 0.27 -8.27 16 21 O -0.54 -9.20 17.14 5.34 0.09 -9.11 16 22 N -0.46 -7.00 9.52 -9.53 -0.09 -7.09 16 23 C 0.10 1.71 10.68 -17.21 -0.18 1.52 16 24 C -0.18 -3.92 9.26 -38.52 -0.36 -4.27 16 25 H 0.29 6.10 8.30 -40.82 -0.34 5.76 16 26 H 0.13 3.07 6.18 -52.49 -0.32 2.74 16 27 H 0.11 2.07 8.06 -52.49 -0.42 1.65 16 28 H 0.14 2.19 7.84 -52.49 -0.41 1.78 16 29 H 0.14 1.99 7.63 -52.48 -0.40 1.59 16 30 H 0.41 3.71 8.15 -40.82 -0.33 3.38 16 31 H 0.40 3.15 8.93 -40.82 -0.36 2.79 16 32 H 0.17 2.48 8.05 -52.48 -0.42 2.06 16 33 H 0.11 2.14 8.05 -52.48 -0.42 1.72 16 LS Contribution 302.18 15.07 4.55 4.55 Total: -1.00 -26.68 302.18 -7.31 -33.99 By element: Atomic # 1 Polarization: 14.00 SS G_CDS: -2.65 Total: 11.35 kcal Atomic # 6 Polarization: -10.96 SS G_CDS: -5.10 Total: -16.06 kcal Atomic # 7 Polarization: -34.01 SS G_CDS: 0.79 Total: -33.22 kcal Atomic # 8 Polarization: -9.20 SS G_CDS: 0.09 Total: -9.11 kcal Atomic # 9 Polarization: -3.47 SS G_CDS: 0.04 Total: -3.44 kcal Atomic # 14 Polarization: 16.97 SS G_CDS: -5.03 Total: 11.94 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -26.68 -7.31 -33.99 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239561437.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.400 kcal (2) G-P(sol) polarization free energy of solvation -26.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds