Wall clock time and date at job start Tue Mar 31 2020 05:48:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30860 * 1 3 3 Si 1.86793 * 120.00289 * 2 1 4 4 H 1.48503 * 109.47352 * 240.00231 * 3 2 1 5 5 H 1.48504 * 109.46997 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47567 * 120.00093 * 3 2 1 7 7 C 1.39906 * 119.99840 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99798 * 162.95847 * 7 2 1 9 9 C 1.41349 * 119.99967 * 342.96263 * 7 2 1 10 10 C 1.40864 * 120.15104 * 334.62434 * 9 7 2 11 11 C 1.37554 * 120.03937 * 179.97438 * 10 9 7 12 12 C 1.38751 * 120.35635 * 359.97438 * 11 10 9 13 13 F 1.35102 * 119.84652 * 179.97438 * 12 11 10 14 14 C 1.40059 * 120.31029 * 0.02562 * 12 11 10 15 15 C 1.48237 * 120.02648 * 180.02562 * 14 12 11 16 16 C 1.39790 * 120.44473 * 310.01830 * 15 14 12 17 17 C 1.38269 * 118.38615 * 179.97438 * 16 15 14 18 18 C 1.39458 * 119.18852 * 0.02562 * 17 16 15 19 19 C 1.48017 * 119.59407 * 180.02562 * 18 17 16 20 20 N 1.34777 * 120.00033 * 179.97438 * 19 18 17 21 21 O 1.21534 * 119.99498 * 0.02562 * 19 18 17 22 22 N 1.32810 * 120.81738 * 359.97438 * 18 17 16 23 23 C 1.31328 * 121.76168 * 0.02562 * 22 18 17 24 24 C 1.38770 * 119.94620 * 0.27293 * 14 12 11 25 25 H 0.97000 * 119.99983 * 359.97438 * 1 2 3 26 26 H 1.07996 * 119.97874 * 359.95802 * 10 9 7 27 27 H 1.07995 * 119.81995 * 179.97438 * 11 10 9 28 28 H 1.07999 * 120.80490 * 359.96287 * 16 15 14 29 29 H 1.08004 * 120.40761 * 179.97438 * 17 16 15 30 30 H 0.96995 * 120.00138 * 0.02562 * 20 19 18 31 31 H 0.96995 * 119.99815 * 179.97438 * 20 19 18 32 32 H 1.08004 * 119.62832 * 180.27915 * 23 22 18 33 33 H 1.08006 * 120.17381 * 179.72404 * 24 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2426 1.6176 0.0000 4 1 3.0964 1.6963 -1.2125 5 1 1.2777 2.7464 -0.0006 6 1 3.0964 1.6963 1.2124 7 6 2.0081 -1.2116 0.0005 8 1 3.0525 -1.2323 -0.2736 9 6 1.3478 -2.4087 0.3597 10 6 0.2176 -2.3688 1.1996 11 6 -0.4235 -3.5351 1.5472 12 6 0.0364 -4.7558 1.0745 13 9 -0.6008 -5.8950 1.4229 14 6 1.1588 -4.8127 0.2386 15 6 1.6443 -6.1203 -0.2633 16 6 1.8523 -7.1846 0.6187 17 6 2.3054 -8.3855 0.1045 18 6 2.5385 -8.4938 -1.2662 19 6 3.0231 -9.7753 -1.8263 20 7 3.2505 -9.8892 -3.1499 21 8 3.2149 -10.7251 -1.0928 22 7 2.3301 -7.4615 -2.0754 23 6 1.9003 -6.3054 -1.6244 24 6 1.8190 -3.6445 -0.1152 25 1 -0.4850 0.8400 0.0004 26 1 -0.1456 -1.4219 1.5709 27 1 -1.2894 -3.5004 2.1917 28 1 1.6638 -7.0716 1.6761 29 1 2.4775 -9.2292 0.7565 30 1 3.0971 -9.1312 -3.7353 31 1 3.5684 -10.7289 -3.5168 32 1 1.7382 -5.4901 -2.3141 33 1 2.6875 -3.6845 -0.7559 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239561437.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:22 Heat of formation + Delta-G solvation = -58.064960 kcal Electronic energy + Delta-G solvation = -20860.512184 eV Core-core repulsion = 17377.886558 eV Total energy + Delta-G solvation = -3482.625627 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 286.086 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -49.37930 -41.64543 -40.00962 -39.05652 -35.75003 -34.91623 -33.80394 -33.04712 -31.61918 -30.15320 -27.03833 -25.85255 -24.73517 -22.86561 -22.66398 -21.82936 -19.39462 -19.16871 -18.24224 -18.05755 -17.32563 -16.94572 -16.56119 -16.49239 -16.22255 -16.11283 -15.81449 -15.25907 -14.78850 -14.52461 -14.50242 -14.23464 -13.84478 -13.73333 -13.40941 -13.16237 -12.77799 -12.51796 -12.28802 -11.77804 -11.62218 -11.51065 -11.15749 -10.92835 -10.77383 -10.73267 -10.33930 -9.47730 -9.12742 -8.69990 -6.38512 -0.60827 0.14665 0.73228 0.83192 1.43168 1.50059 1.54740 1.66433 2.21040 2.33635 2.58636 2.78899 3.14886 3.51823 3.61877 3.79479 3.86514 3.92136 3.98749 4.21190 4.30720 4.65261 4.84128 4.90746 4.92009 5.00961 5.11692 5.26606 5.44470 5.49694 5.67730 5.78605 5.84670 5.97047 6.17332 6.24072 6.54243 6.65007 6.84245 6.86042 7.20083 8.27190 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.025589 B = 0.003810 C = 0.003438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1093.939725 B = 7346.423251 C = 8141.429502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.818 5.818 2 C 0.039 3.961 3 Si 0.981 3.019 4 H -0.259 1.259 5 H -0.270 1.270 6 H -0.261 1.261 7 C -0.484 4.484 8 H 0.086 0.914 9 C 0.079 3.921 10 C -0.153 4.153 11 C -0.129 4.129 12 C -0.036 4.036 13 F -0.163 7.163 14 C -0.057 4.057 15 C -0.057 4.057 16 C -0.071 4.071 17 C -0.106 4.106 18 C 0.046 3.954 19 C 0.582 3.418 20 N -0.814 5.814 21 O -0.573 6.573 22 N -0.451 5.451 23 C 0.107 3.893 24 C -0.187 4.187 25 H 0.292 0.708 26 H 0.116 0.884 27 H 0.121 0.879 28 H 0.147 0.853 29 H 0.159 0.841 30 H 0.421 0.579 31 H 0.416 0.584 32 H 0.178 0.822 33 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.861 -7.647 -3.894 9.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.443 5.443 2 C -0.177 4.177 3 Si 0.802 3.198 4 H -0.183 1.183 5 H -0.195 1.195 6 H -0.185 1.185 7 C -0.513 4.513 8 H 0.104 0.896 9 C 0.077 3.923 10 C -0.172 4.172 11 C -0.148 4.148 12 C -0.056 4.056 13 F -0.143 7.143 14 C -0.059 4.059 15 C -0.059 4.059 16 C -0.097 4.097 17 C -0.126 4.126 18 C -0.092 4.092 19 C 0.366 3.634 20 N -0.378 5.378 21 O -0.452 6.452 22 N -0.162 5.162 23 C -0.053 4.053 24 C -0.207 4.207 25 H 0.103 0.897 26 H 0.134 0.866 27 H 0.139 0.861 28 H 0.164 0.836 29 H 0.177 0.823 30 H 0.253 0.747 31 H 0.249 0.751 32 H 0.194 0.806 33 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 3.873 -8.187 -4.234 9.997 hybrid contribution -0.291 0.889 0.677 1.155 sum 3.582 -7.298 -3.557 8.874 Atomic orbital electron populations 1.69834 1.08963 1.31105 1.34383 1.26725 0.95440 1.04486 0.91084 0.85251 0.78792 0.75640 0.80149 1.18277 1.19474 1.18511 1.19844 0.98410 0.91822 1.41201 0.89633 1.17890 0.91859 0.93028 0.89536 1.21259 0.99128 0.96521 1.00311 1.20819 1.00847 0.91408 1.01771 1.17373 0.98243 0.81528 1.08441 1.91305 1.81822 1.49472 1.91661 1.18301 0.95814 0.92228 0.99564 1.20124 0.96939 0.93541 0.95303 1.21821 0.95367 0.91441 1.01066 1.22118 0.96502 0.98502 0.95503 1.21213 1.02351 0.93903 0.91708 1.17778 0.76528 0.85645 0.83495 1.43471 1.67704 1.19470 1.07133 1.90801 1.54300 1.39782 1.60336 1.67482 1.10678 0.99437 1.38553 1.23080 0.94642 0.94617 0.92935 1.21080 1.03357 0.90645 1.05573 0.89723 0.86587 0.86081 0.83553 0.82320 0.74739 0.75083 0.80551 0.86288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -38.86 10.96 21.82 0.24 -38.62 16 2 C 0.04 1.78 5.14 85.24 0.44 2.21 16 3 Si 0.98 34.53 29.59 68.60 2.03 36.56 16 4 H -0.26 -8.83 7.11 99.48 0.71 -8.12 16 5 H -0.27 -9.13 7.11 99.48 0.71 -8.42 16 6 H -0.26 -9.06 7.11 99.48 0.71 -8.35 16 7 C -0.48 -23.27 9.04 23.44 0.21 -23.06 16 8 H 0.09 3.91 7.90 -2.91 -0.02 3.88 16 9 C 0.08 3.84 5.56 -21.31 -0.12 3.72 16 10 C -0.15 -7.31 8.68 22.75 0.20 -7.11 16 11 C -0.13 -5.69 9.99 22.23 0.22 -5.47 16 12 C -0.04 -1.53 7.20 22.83 0.16 -1.37 16 13 F -0.16 -6.65 15.91 44.97 0.72 -5.94 16 14 C -0.06 -2.33 5.49 -20.05 -0.11 -2.44 16 15 C -0.06 -1.96 5.32 -19.88 -0.11 -2.07 16 16 C -0.07 -2.23 8.99 22.65 0.20 -2.03 16 17 C -0.11 -3.03 9.61 22.57 0.22 -2.81 16 18 C 0.05 1.31 6.75 41.89 0.28 1.60 16 19 C 0.58 15.31 8.08 86.84 0.70 16.01 16 20 N -0.81 -14.32 8.86 -175.48 -1.56 -15.87 16 21 O -0.57 -18.25 17.14 -3.82 -0.07 -18.31 16 22 N -0.45 -12.78 9.52 -184.08 -1.75 -14.53 16 23 C 0.11 3.32 10.68 85.13 0.91 4.22 16 24 C -0.19 -8.09 9.26 22.95 0.21 -7.88 16 25 H 0.29 12.58 8.30 -92.71 -0.77 11.81 16 26 H 0.12 5.76 6.18 -2.91 -0.02 5.74 16 27 H 0.12 4.77 8.06 -2.91 -0.02 4.75 16 28 H 0.15 4.36 7.84 -2.91 -0.02 4.34 16 29 H 0.16 4.08 7.63 -2.91 -0.02 4.05 16 30 H 0.42 6.31 8.15 -92.71 -0.76 5.56 16 31 H 0.42 5.32 8.93 -92.71 -0.83 4.49 16 32 H 0.18 5.01 8.05 -2.91 -0.02 4.99 16 33 H 0.12 4.74 8.05 -2.91 -0.02 4.72 16 Total: -1.00 -56.40 302.18 2.65 -53.75 By element: Atomic # 1 Polarization: 29.82 SS G_CDS: -0.39 Total: 29.44 kcal Atomic # 6 Polarization: -29.90 SS G_CDS: 3.43 Total: -26.47 kcal Atomic # 7 Polarization: -65.96 SS G_CDS: -3.07 Total: -69.03 kcal Atomic # 8 Polarization: -18.25 SS G_CDS: -0.07 Total: -18.31 kcal Atomic # 9 Polarization: -6.65 SS G_CDS: 0.72 Total: -5.94 kcal Atomic # 14 Polarization: 34.53 SS G_CDS: 2.03 Total: 36.56 kcal Total: -56.40 2.65 -53.75 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239561437.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.317 kcal (2) G-P(sol) polarization free energy of solvation -56.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds