Wall clock time and date at job start Tue Mar 31 2020 05:53:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30838 * 1 3 3 Si 1.86799 * 119.99734 * 2 1 4 4 H 1.48500 * 109.47208 * 274.96161 * 3 2 1 5 5 H 1.48491 * 109.47603 * 34.96507 * 3 2 1 6 6 H 1.48503 * 109.46824 * 154.96561 * 3 2 1 7 7 C 1.39921 * 119.99896 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00136 * 162.80395 * 7 2 1 9 9 C 1.41428 * 120.00215 * 342.80268 * 7 2 1 10 10 C 1.40753 * 120.17060 * 334.76282 * 9 7 2 11 11 C 1.37916 * 119.98426 * 179.97438 * 10 9 7 12 12 F 1.35096 * 119.83171 * 180.02562 * 11 10 9 13 13 C 1.38648 * 120.33164 * 359.97438 * 11 10 9 14 14 C 1.39707 * 120.34794 * 359.97438 * 13 11 10 15 15 C 1.48292 * 119.99302 * 180.02562 * 14 13 11 16 16 C 1.39762 * 120.44188 * 359.97438 * 15 14 13 17 17 C 1.38297 * 118.38678 * 179.97438 * 16 15 14 18 18 C 1.39448 * 119.18449 * 0.02562 * 17 16 15 19 19 C 1.48026 * 119.59481 * 179.97438 * 18 17 16 20 20 N 1.34784 * 120.00038 * 179.97438 * 19 18 17 21 21 O 1.21528 * 120.00181 * 359.97438 * 19 18 17 22 22 N 1.32809 * 120.80888 * 0.25579 * 18 17 16 23 23 C 1.31339 * 121.76451 * 359.47138 * 22 18 17 24 24 C 1.38857 * 120.01209 * 0.27646 * 14 13 11 25 25 H 0.97001 * 120.00065 * 359.97438 * 1 2 3 26 26 H 1.08008 * 120.01017 * 359.97438 * 10 9 7 27 27 H 1.08000 * 119.82432 * 180.02562 * 13 11 10 28 28 H 1.07996 * 120.81062 * 359.95871 * 16 15 14 29 29 H 1.07992 * 120.40529 * 180.02562 * 17 16 15 30 30 H 0.97001 * 119.99848 * 179.97438 * 20 19 18 31 31 H 0.97005 * 119.99793 * 359.72231 * 20 19 18 32 32 H 1.07997 * 119.62846 * 180.26683 * 23 22 18 33 33 H 1.07998 * 120.16919 * 179.72124 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 2.3849 2.1070 -1.3948 5 1 1.4962 2.6201 0.8023 6 1 3.5884 1.4122 0.5925 7 6 2.0080 -1.2118 -0.0005 8 1 3.0517 -1.2326 -0.2771 9 6 1.3483 -2.4094 0.3610 10 6 0.2192 -2.3693 1.2005 11 6 -0.4215 -3.5395 1.5503 12 9 -1.5052 -3.4975 2.3558 13 6 0.0405 -4.7587 1.0785 14 6 1.1592 -4.8144 0.2436 15 6 1.6462 -6.1226 -0.2570 16 6 0.9933 -7.3054 0.1011 17 6 1.4833 -8.5016 -0.3904 18 6 2.6041 -8.4878 -1.2200 19 6 3.1365 -9.7629 -1.7508 20 7 4.2190 -9.7590 -2.5537 21 8 2.5976 -10.8133 -1.4625 22 7 3.2029 -7.3451 -1.5353 23 6 2.7640 -6.1892 -1.0923 24 6 1.8184 -3.6456 -0.1134 25 1 -0.4850 0.8400 0.0004 26 1 -0.1454 -1.4225 1.5708 27 1 -0.4678 -5.6699 1.3572 28 1 0.1274 -7.2857 0.7462 29 1 1.0038 -9.4349 -0.1348 30 1 4.5681 -10.5947 -2.9012 31 1 4.6468 -8.9202 -2.7871 32 1 3.2751 -5.2805 -1.3739 33 1 2.6861 -3.6861 -0.7550 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239567011.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:42 Heat of formation + Delta-G solvation = -42.412649 kcal Electronic energy + Delta-G solvation = -20667.945987 eV Core-core repulsion = 17185.999096 eV Total energy + Delta-G solvation = -3481.946892 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 286.086 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -47.82120 -40.47819 -38.85690 -37.43977 -34.34282 -33.75463 -32.39409 -31.71721 -29.90118 -28.47489 -25.81540 -24.60085 -23.46477 -21.55039 -20.71901 -20.44425 -18.27891 -17.77977 -17.05443 -16.30307 -15.89217 -15.34304 -15.17397 -15.03740 -14.61286 -14.49395 -14.45019 -14.36318 -13.65008 -13.43648 -13.24185 -12.89606 -12.15955 -12.05111 -11.78364 -11.37070 -11.22463 -11.03598 -10.65154 -10.47105 -10.27396 -9.90281 -9.82351 -9.78834 -9.46699 -9.44168 -9.04729 -7.72728 -7.36783 -7.01580 -4.69012 0.56886 1.36548 2.36734 2.46344 2.90024 2.95527 2.99876 3.09583 3.38724 3.74543 4.00900 4.28336 4.37602 4.92631 4.96234 5.06126 5.13431 5.29937 5.37016 5.69340 5.81034 6.01924 6.14231 6.22066 6.34534 6.59897 6.64068 6.74038 6.79005 6.94524 7.20269 7.22409 7.38933 7.47297 7.65048 7.82315 7.93382 8.18675 8.27680 8.54468 8.56409 9.91533 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.022805 B = 0.003806 C = 0.003294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1227.504323 B = 7355.868179 C = 8498.966311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.783 5.783 2 C 0.075 3.925 3 Si 0.912 3.088 4 H -0.268 1.268 5 H -0.274 1.274 6 H -0.258 1.258 7 C -0.453 4.453 8 H 0.086 0.914 9 C 0.125 3.875 10 C -0.187 4.187 11 C 0.107 3.893 12 F -0.164 7.164 13 C -0.257 4.257 14 C -0.022 4.022 15 C -0.029 4.029 16 C -0.090 4.090 17 C -0.103 4.103 18 C 0.040 3.960 19 C 0.583 3.417 20 N -0.839 5.839 21 O -0.546 6.546 22 N -0.456 5.456 23 C 0.098 3.902 24 C -0.202 4.202 25 H 0.286 0.714 26 H 0.132 0.868 27 H 0.106 0.894 28 H 0.144 0.856 29 H 0.144 0.856 30 H 0.402 0.598 31 H 0.412 0.588 32 H 0.169 0.831 33 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.093 -7.608 -2.511 9.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.407 5.407 2 C -0.145 4.145 3 Si 0.736 3.264 4 H -0.193 1.193 5 H -0.198 1.198 6 H -0.181 1.181 7 C -0.481 4.481 8 H 0.104 0.896 9 C 0.122 3.878 10 C -0.207 4.207 11 C 0.088 3.912 12 F -0.143 7.143 13 C -0.277 4.277 14 C -0.023 4.023 15 C -0.031 4.031 16 C -0.115 4.115 17 C -0.124 4.124 18 C -0.097 4.097 19 C 0.368 3.632 20 N -0.402 5.402 21 O -0.422 6.422 22 N -0.167 5.167 23 C -0.063 4.063 24 C -0.221 4.221 25 H 0.097 0.903 26 H 0.149 0.851 27 H 0.124 0.876 28 H 0.162 0.838 29 H 0.162 0.838 30 H 0.232 0.768 31 H 0.242 0.758 32 H 0.186 0.814 33 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 5.121 -8.096 -2.762 9.970 hybrid contribution -0.389 0.981 0.383 1.122 sum 4.733 -7.115 -2.379 8.870 Atomic orbital electron populations 1.69794 1.07764 1.29974 1.33185 1.25995 0.94801 1.01790 0.91941 0.86215 0.80748 0.80122 0.79302 1.19308 1.19839 1.18143 1.19626 0.98158 0.90759 1.39581 0.89568 1.17280 0.90236 0.92180 0.88061 1.21439 1.00536 0.96122 1.02644 1.17523 0.85419 0.94942 0.93328 1.91355 1.53508 1.97545 1.71883 1.20276 1.02507 0.95494 1.09440 1.17893 0.95916 0.90140 0.98316 1.20286 0.94282 0.94147 0.94376 1.21753 0.99880 0.91035 0.98847 1.21975 0.95357 0.99514 0.95505 1.20859 0.96235 0.92128 1.00477 1.17895 0.79930 0.87544 0.77867 1.43641 1.31637 1.13407 1.51475 1.90802 1.59672 1.32068 1.59697 1.67421 1.29896 0.98048 1.21291 1.22972 0.93942 0.95221 0.94177 1.21168 1.03346 0.91654 1.05953 0.90295 0.85062 0.87624 0.83831 0.83816 0.76795 0.75758 0.81375 0.87467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -18.74 10.96 55.55 0.61 -18.14 16 2 C 0.07 1.70 5.14 -17.35 -0.09 1.61 16 3 Si 0.91 17.00 29.59 -169.99 -5.03 11.97 16 4 H -0.27 -4.94 7.11 56.52 0.40 -4.54 16 5 H -0.27 -5.05 7.11 56.52 0.40 -4.65 16 6 H -0.26 -4.75 7.11 56.52 0.40 -4.35 16 7 C -0.45 -10.72 9.05 -37.74 -0.34 -11.06 16 8 H 0.09 1.91 7.90 -52.49 -0.41 1.50 16 9 C 0.13 2.99 5.56 -106.88 -0.59 2.40 16 10 C -0.19 -4.56 8.66 -38.75 -0.34 -4.89 16 11 C 0.11 2.44 7.28 -39.55 -0.29 2.15 16 12 F -0.16 -3.64 17.26 2.25 0.04 -3.60 16 13 C -0.26 -5.30 9.42 -38.88 -0.37 -5.67 16 14 C -0.02 -0.43 5.87 -104.98 -0.62 -1.04 16 15 C -0.03 -0.48 5.90 -104.65 -0.62 -1.10 16 16 C -0.09 -1.35 9.52 -38.99 -0.37 -1.72 16 17 C -0.10 -1.48 9.62 -39.11 -0.38 -1.85 16 18 C 0.04 0.59 6.75 -82.98 -0.56 0.03 16 19 C 0.58 8.09 8.08 -12.24 -0.10 7.99 16 20 N -0.84 -8.25 8.86 30.57 0.27 -7.98 16 21 O -0.55 -9.00 17.14 5.34 0.09 -8.91 16 22 N -0.46 -6.67 9.52 -9.54 -0.09 -6.76 16 23 C 0.10 1.51 10.59 -17.22 -0.18 1.32 16 24 C -0.20 -4.26 9.18 -38.50 -0.35 -4.62 16 25 H 0.29 6.22 8.30 -40.82 -0.34 5.88 16 26 H 0.13 3.34 6.18 -52.48 -0.32 3.02 16 27 H 0.11 1.92 6.24 -52.49 -0.33 1.59 16 28 H 0.14 1.95 6.29 -52.49 -0.33 1.62 16 29 H 0.14 1.87 7.63 -52.49 -0.40 1.47 16 30 H 0.40 3.04 8.93 -40.82 -0.36 2.67 16 31 H 0.41 3.56 8.15 -40.82 -0.33 3.23 16 32 H 0.17 2.37 6.21 -52.49 -0.33 2.04 16 33 H 0.11 2.01 6.21 -52.49 -0.33 1.69 16 LS Contribution 297.30 15.07 4.48 4.48 Total: -1.00 -27.12 297.30 -7.10 -34.22 By element: Atomic # 1 Polarization: 13.44 SS G_CDS: -2.28 Total: 11.16 kcal Atomic # 6 Polarization: -11.26 SS G_CDS: -5.19 Total: -16.45 kcal Atomic # 7 Polarization: -33.66 SS G_CDS: 0.79 Total: -32.87 kcal Atomic # 8 Polarization: -9.00 SS G_CDS: 0.09 Total: -8.91 kcal Atomic # 9 Polarization: -3.64 SS G_CDS: 0.04 Total: -3.60 kcal Atomic # 14 Polarization: 17.00 SS G_CDS: -5.03 Total: 11.97 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -27.12 -7.10 -34.22 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239567011.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.195 kcal (2) G-P(sol) polarization free energy of solvation -27.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds