Wall clock time and date at job start Tue Mar 31 2020 05:53:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30838 * 1 3 3 Si 1.86799 * 119.99734 * 2 1 4 4 H 1.48500 * 109.47208 * 274.96161 * 3 2 1 5 5 H 1.48491 * 109.47603 * 34.96507 * 3 2 1 6 6 H 1.48503 * 109.46824 * 154.96561 * 3 2 1 7 7 C 1.39921 * 119.99896 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00136 * 162.80395 * 7 2 1 9 9 C 1.41428 * 120.00215 * 342.80268 * 7 2 1 10 10 C 1.40753 * 120.17060 * 334.76282 * 9 7 2 11 11 C 1.37916 * 119.98426 * 179.97438 * 10 9 7 12 12 F 1.35096 * 119.83171 * 180.02562 * 11 10 9 13 13 C 1.38648 * 120.33164 * 359.97438 * 11 10 9 14 14 C 1.39707 * 120.34794 * 359.97438 * 13 11 10 15 15 C 1.48292 * 119.99302 * 180.02562 * 14 13 11 16 16 C 1.39762 * 120.44188 * 359.97438 * 15 14 13 17 17 C 1.38297 * 118.38678 * 179.97438 * 16 15 14 18 18 C 1.39448 * 119.18449 * 0.02562 * 17 16 15 19 19 C 1.48026 * 119.59481 * 179.97438 * 18 17 16 20 20 N 1.34784 * 120.00038 * 179.97438 * 19 18 17 21 21 O 1.21528 * 120.00181 * 359.97438 * 19 18 17 22 22 N 1.32809 * 120.80888 * 0.25579 * 18 17 16 23 23 C 1.31339 * 121.76451 * 359.47138 * 22 18 17 24 24 C 1.38857 * 120.01209 * 0.27646 * 14 13 11 25 25 H 0.97001 * 120.00065 * 359.97438 * 1 2 3 26 26 H 1.08008 * 120.01017 * 359.97438 * 10 9 7 27 27 H 1.08000 * 119.82432 * 180.02562 * 13 11 10 28 28 H 1.07996 * 120.81062 * 359.95871 * 16 15 14 29 29 H 1.07992 * 120.40529 * 180.02562 * 17 16 15 30 30 H 0.97001 * 119.99848 * 179.97438 * 20 19 18 31 31 H 0.97005 * 119.99793 * 359.72231 * 20 19 18 32 32 H 1.07997 * 119.62846 * 180.26683 * 23 22 18 33 33 H 1.07998 * 120.16919 * 179.72124 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 2.3849 2.1070 -1.3948 5 1 1.4962 2.6201 0.8023 6 1 3.5884 1.4122 0.5925 7 6 2.0080 -1.2118 -0.0005 8 1 3.0517 -1.2326 -0.2771 9 6 1.3483 -2.4094 0.3610 10 6 0.2192 -2.3693 1.2005 11 6 -0.4215 -3.5395 1.5503 12 9 -1.5052 -3.4975 2.3558 13 6 0.0405 -4.7587 1.0785 14 6 1.1592 -4.8144 0.2436 15 6 1.6462 -6.1226 -0.2570 16 6 0.9933 -7.3054 0.1011 17 6 1.4833 -8.5016 -0.3904 18 6 2.6041 -8.4878 -1.2200 19 6 3.1365 -9.7629 -1.7508 20 7 4.2190 -9.7590 -2.5537 21 8 2.5976 -10.8133 -1.4625 22 7 3.2029 -7.3451 -1.5353 23 6 2.7640 -6.1892 -1.0923 24 6 1.8184 -3.6456 -0.1134 25 1 -0.4850 0.8400 0.0004 26 1 -0.1454 -1.4225 1.5708 27 1 -0.4678 -5.6699 1.3572 28 1 0.1274 -7.2857 0.7462 29 1 1.0038 -9.4349 -0.1348 30 1 4.5681 -10.5947 -2.9012 31 1 4.6468 -8.9202 -2.7871 32 1 3.2751 -5.2805 -1.3739 33 1 2.6861 -3.6861 -0.7550 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239567011.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:42 Heat of formation + Delta-G solvation = -58.987727 kcal Electronic energy + Delta-G solvation = -20668.664737 eV Core-core repulsion = 17185.999096 eV Total energy + Delta-G solvation = -3482.665641 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 286.086 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -49.59813 -41.66378 -40.07471 -39.00140 -35.91539 -34.86485 -33.70217 -33.00549 -31.59498 -29.95626 -27.51447 -25.89907 -24.76081 -22.94449 -22.34039 -21.77137 -19.52873 -19.22006 -18.15924 -17.88276 -17.26735 -16.81084 -16.68845 -16.29093 -16.17151 -16.14338 -15.81312 -15.74072 -14.94461 -14.68179 -14.63790 -14.22626 -13.87277 -13.52371 -13.28457 -12.97504 -12.72337 -12.61888 -12.16404 -12.05490 -11.59624 -11.50468 -11.24729 -10.92344 -10.75098 -10.65117 -10.43704 -9.45094 -8.97186 -8.70663 -6.47301 -0.69572 0.19157 0.75621 0.88768 1.41516 1.46798 1.56686 1.77869 2.19136 2.37131 2.57505 2.90959 3.17474 3.51304 3.56412 3.81251 3.87980 3.92235 4.00691 4.24501 4.49391 4.55935 4.76878 4.88783 4.94121 4.97667 5.09441 5.25174 5.49189 5.58263 5.68649 5.78290 5.81377 5.91751 6.17387 6.27000 6.52616 6.69640 6.80524 6.82355 7.22471 8.24682 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.022805 B = 0.003806 C = 0.003294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1227.504323 B = 7355.868179 C = 8498.966311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.820 5.820 2 C 0.035 3.965 3 Si 0.983 3.017 4 H -0.261 1.261 5 H -0.272 1.272 6 H -0.253 1.253 7 C -0.483 4.483 8 H 0.094 0.906 9 C 0.102 3.898 10 C -0.219 4.219 11 C 0.094 3.906 12 F -0.165 7.165 13 C -0.257 4.257 14 C -0.010 4.010 15 C -0.053 4.053 16 C -0.079 4.079 17 C -0.105 4.105 18 C 0.042 3.958 19 C 0.581 3.419 20 N -0.816 5.816 21 O -0.574 6.574 22 N -0.451 5.451 23 C 0.102 3.898 24 C -0.209 4.209 25 H 0.291 0.709 26 H 0.109 0.891 27 H 0.132 0.868 28 H 0.159 0.841 29 H 0.159 0.841 30 H 0.415 0.585 31 H 0.421 0.579 32 H 0.180 0.820 33 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.486 -8.907 -3.361 11.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.445 5.445 2 C -0.181 4.181 3 Si 0.804 3.196 4 H -0.186 1.186 5 H -0.197 1.197 6 H -0.176 1.176 7 C -0.511 4.511 8 H 0.112 0.888 9 C 0.100 3.900 10 C -0.240 4.240 11 C 0.075 3.925 12 F -0.144 7.144 13 C -0.277 4.277 14 C -0.011 4.011 15 C -0.055 4.055 16 C -0.104 4.104 17 C -0.126 4.126 18 C -0.096 4.096 19 C 0.365 3.635 20 N -0.379 5.379 21 O -0.454 6.454 22 N -0.162 5.162 23 C -0.059 4.059 24 C -0.228 4.228 25 H 0.102 0.898 26 H 0.127 0.873 27 H 0.150 0.850 28 H 0.176 0.824 29 H 0.176 0.824 30 H 0.248 0.752 31 H 0.253 0.747 32 H 0.197 0.803 33 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 6.547 -9.404 -3.636 12.021 hybrid contribution -0.789 1.156 0.594 1.521 sum 5.758 -8.247 -3.042 10.508 Atomic orbital electron populations 1.69868 1.09307 1.31036 1.34287 1.26845 0.95392 1.04931 0.90969 0.85156 0.79329 0.75678 0.79454 1.18550 1.19668 1.17644 1.19946 0.98723 0.91595 1.40838 0.88777 1.17607 0.90460 0.93609 0.88368 1.21347 1.02111 0.95876 1.04639 1.17731 0.85527 0.95512 0.93703 1.91339 1.53540 1.97601 1.71936 1.20583 1.02715 0.95509 1.08917 1.18099 0.94876 0.91254 0.96888 1.20141 0.95824 0.93180 0.96353 1.21918 0.99769 0.90558 0.98173 1.22147 0.95322 0.99839 0.95264 1.21200 0.96053 0.92554 0.99771 1.17833 0.80646 0.86718 0.78353 1.43494 1.30049 1.14689 1.49665 1.90799 1.60822 1.32721 1.61038 1.67490 1.29718 0.97780 1.21237 1.23138 0.93389 0.95928 0.93414 1.21416 1.04065 0.91226 1.06073 0.89847 0.87292 0.84999 0.82393 0.82361 0.75171 0.74746 0.80291 0.85398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -40.66 10.96 21.82 0.24 -40.42 16 2 C 0.03 1.63 5.14 85.25 0.44 2.06 16 3 Si 0.98 35.06 29.59 68.60 2.03 37.09 16 4 H -0.26 -8.93 7.11 99.48 0.71 -8.22 16 5 H -0.27 -9.51 7.11 99.48 0.71 -8.80 16 6 H -0.25 -8.72 7.11 99.48 0.71 -8.01 16 7 C -0.48 -23.32 9.05 23.46 0.21 -23.11 16 8 H 0.09 4.21 7.90 -2.91 -0.02 4.19 16 9 C 0.10 5.01 5.56 -21.32 -0.12 4.89 16 10 C -0.22 -11.11 8.66 22.81 0.20 -10.92 16 11 C 0.09 4.38 7.28 22.29 0.16 4.55 16 12 F -0.17 -7.47 17.26 44.97 0.78 -6.70 16 13 C -0.26 -10.41 9.42 22.72 0.21 -10.20 16 14 C -0.01 -0.39 5.87 -20.10 -0.12 -0.51 16 15 C -0.05 -1.66 5.90 -19.88 -0.12 -1.78 16 16 C -0.08 -2.17 9.52 22.65 0.22 -1.95 16 17 C -0.11 -2.73 9.62 22.58 0.22 -2.51 16 18 C 0.04 1.11 6.75 41.89 0.28 1.39 16 19 C 0.58 14.57 8.08 86.84 0.70 15.27 16 20 N -0.82 -13.60 8.86 -175.47 -1.56 -15.15 16 21 O -0.57 -17.67 17.14 -3.80 -0.07 -17.73 16 22 N -0.45 -11.96 9.52 -184.10 -1.75 -13.71 16 23 C 0.10 2.89 10.59 85.12 0.90 3.79 16 24 C -0.21 -8.76 9.18 22.97 0.21 -8.55 16 25 H 0.29 13.09 8.30 -92.71 -0.77 12.32 16 26 H 0.11 5.90 6.18 -2.91 -0.02 5.88 16 27 H 0.13 4.53 6.24 -2.91 -0.02 4.51 16 28 H 0.16 3.81 6.29 -2.91 -0.02 3.79 16 29 H 0.16 3.67 7.63 -2.91 -0.02 3.65 16 30 H 0.42 5.02 8.93 -92.71 -0.83 4.19 16 31 H 0.42 5.92 8.15 -92.70 -0.76 5.16 16 32 H 0.18 4.62 6.21 -2.91 -0.02 4.60 16 33 H 0.13 4.68 6.21 -2.91 -0.02 4.66 16 Total: -1.00 -58.99 297.30 2.71 -56.29 By element: Atomic # 1 Polarization: 28.27 SS G_CDS: -0.37 Total: 27.91 kcal Atomic # 6 Polarization: -30.97 SS G_CDS: 3.40 Total: -27.57 kcal Atomic # 7 Polarization: -66.22 SS G_CDS: -3.07 Total: -69.29 kcal Atomic # 8 Polarization: -17.67 SS G_CDS: -0.07 Total: -17.73 kcal Atomic # 9 Polarization: -7.47 SS G_CDS: 0.78 Total: -6.70 kcal Atomic # 14 Polarization: 35.06 SS G_CDS: 2.03 Total: 37.09 kcal Total: -58.99 2.71 -56.29 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239567011.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.701 kcal (2) G-P(sol) polarization free energy of solvation -58.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds