Wall clock time and date at job start Tue Mar 31 2020 06:02:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38355 * 119.86693 * 2 1 4 4 C 1.38001 * 120.14425 * 179.72092 * 3 2 1 5 5 C 1.39346 * 119.89435 * 0.27970 * 4 3 2 6 6 C 1.48369 * 120.13064 * 180.02562 * 5 4 3 7 7 C 1.39351 * 120.11836 * 309.72128 * 6 5 4 8 8 C 1.38017 * 119.87532 * 179.74538 * 7 6 5 9 9 C 1.38326 * 120.12099 * 0.55653 * 8 7 6 10 10 C 1.50700 * 119.87615 * 179.71861 * 9 8 7 11 11 C 1.50701 * 109.47011 * 269.97494 * 10 9 8 12 12 H 1.07993 * 120.00268 * 0.02562 * 11 10 9 13 13 C 1.37879 * 119.99351 * 180.02562 * 11 10 9 14 14 N 1.31517 * 119.99267 * 180.02562 * 13 11 10 15 15 Si 1.86791 * 120.00504 * 0.02562 * 13 11 10 16 16 H 1.48495 * 109.47354 * 90.00101 * 15 13 11 17 17 H 1.48504 * 109.47061 * 209.99903 * 15 13 11 18 18 H 1.48502 * 109.47362 * 329.99968 * 15 13 11 19 19 C 1.38325 * 120.24336 * 359.69379 * 9 8 7 20 20 C 1.38016 * 120.12197 * 0.02621 * 19 9 8 21 21 C 1.39425 * 119.74085 * 359.97438 * 5 4 3 22 22 Cl 1.73598 * 120.07303 * 179.97438 * 21 5 4 23 23 C 1.38168 * 119.85451 * 359.97438 * 21 5 4 24 24 H 1.08999 * 109.46933 * 90.00124 * 1 2 3 25 25 H 1.09002 * 109.46618 * 210.00280 * 1 2 3 26 26 H 1.08999 * 109.47113 * 329.99880 * 1 2 3 27 27 H 1.08002 * 119.93064 * 0.02562 * 3 2 1 28 28 H 1.08002 * 120.04933 * 180.29828 * 4 3 2 29 29 H 1.07999 * 120.05904 * 0.02562 * 7 6 5 30 30 H 1.08001 * 119.93860 * 180.27181 * 8 7 6 31 31 H 1.08996 * 109.46953 * 29.97999 * 10 9 8 32 32 H 1.08999 * 109.46837 * 149.97694 * 10 9 8 33 33 H 0.97004 * 119.99826 * 179.97438 * 14 13 11 34 34 H 1.08000 * 119.93277 * 179.97438 * 19 9 8 35 35 H 1.08004 * 120.05798 * 180.02562 * 20 19 9 36 36 H 1.07995 * 119.94973 * 179.97438 * 23 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1960 1.1998 0.0000 4 6 3.5760 1.2065 0.0058 5 6 4.2764 0.0018 0.0058 6 6 5.7600 0.0029 0.0126 7 6 6.4630 0.7762 -0.9092 8 6 7.8431 0.7775 -0.8950 9 6 8.5285 0.0042 0.0246 10 6 10.0355 0.0049 0.0310 11 6 10.5423 -1.0810 -0.8827 12 1 9.8431 -1.7086 -1.4152 13 6 11.8986 -1.2733 -1.0388 14 7 12.3409 -2.2207 -1.8366 15 14 13.1080 -0.1882 -0.1172 16 1 13.4236 -0.8038 1.1967 17 1 14.3550 -0.0510 -0.9119 18 1 12.5069 1.1529 0.0960 19 6 7.8358 -0.7693 0.9385 20 6 6.4557 -0.7737 0.9370 21 6 3.5774 -1.2046 0.0004 22 17 4.4412 -2.7104 -0.0003 23 6 2.1958 -1.1990 -0.0043 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3632 -0.8900 0.5139 26 1 -0.3633 0.8900 0.5138 27 1 1.6527 2.1332 0.0004 28 1 4.1123 2.1439 0.0107 29 1 5.9287 1.3768 -1.6305 30 1 8.3889 1.3798 -1.6061 31 1 10.3998 0.9716 -0.3164 32 1 10.3945 -0.1758 1.0442 33 1 13.2951 -2.3557 -1.9468 34 1 8.3761 -1.3714 1.6540 35 1 5.9159 -1.3777 1.6513 36 1 1.6528 -2.1325 -0.0089 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239862898.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:05 Heat of formation + Delta-G solvation = 23.698296 kcal Electronic energy + Delta-G solvation = -18741.212527 eV Core-core repulsion = 15794.009140 eV Total energy + Delta-G solvation = -2947.203387 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 286.082 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.84329 -38.33531 -36.41949 -34.16510 -32.76989 -31.10726 -30.94544 -30.31362 -28.32202 -25.98921 -23.11767 -23.00302 -21.70654 -21.34649 -19.99830 -17.09233 -16.78046 -15.84396 -15.70554 -15.04283 -14.61832 -14.29102 -14.10325 -14.02472 -13.90828 -13.04704 -12.94446 -12.84002 -12.58968 -12.41363 -12.15673 -11.76735 -11.66806 -11.45250 -11.37787 -11.17228 -10.76641 -10.58460 -10.28900 -10.08909 -9.93273 -9.39907 -9.00636 -8.75189 -8.59313 -8.34462 -7.62246 -6.08103 -4.07474 0.89794 1.11109 2.00195 2.03836 2.20160 3.27847 3.35679 3.38159 3.48645 4.36365 4.40522 4.54215 4.68252 4.72799 5.02995 5.06622 5.23368 5.30446 5.31615 5.44983 5.46687 5.53112 5.65829 5.80963 5.86155 5.99483 6.05734 6.13719 6.28233 6.31535 6.53217 6.56140 6.69022 6.93055 6.99641 6.99765 7.06237 7.56097 7.57023 7.69970 8.48587 8.97626 9.51792 11.04862 Molecular weight = 286.08amu Principal moments of inertia in cm(-1) A = 0.033448 B = 0.003581 C = 0.003370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.918706 B = 7816.734573 C = 8305.887371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.086 4.086 3 C -0.116 4.116 4 C -0.098 4.098 5 C -0.020 4.020 6 C -0.093 4.093 7 C -0.098 4.098 8 C -0.125 4.125 9 C -0.017 4.017 10 C 0.012 3.988 11 C -0.513 4.513 12 H 0.074 0.926 13 C 0.069 3.931 14 N -0.899 5.899 15 Si 0.878 3.122 16 H -0.276 1.276 17 H -0.286 1.286 18 H -0.265 1.265 19 C -0.124 4.124 20 C -0.090 4.090 21 C -0.028 4.028 22 Cl -0.057 7.057 23 C -0.112 4.112 24 H 0.071 0.929 25 H 0.067 0.933 26 H 0.067 0.933 27 H 0.127 0.873 28 H 0.132 0.868 29 H 0.114 0.886 30 H 0.121 0.879 31 H 0.029 0.971 32 H 0.024 0.976 33 H 0.264 0.736 34 H 0.121 0.879 35 H 0.114 0.886 36 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.322 6.139 5.053 23.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.086 4.086 3 C -0.134 4.134 4 C -0.116 4.116 5 C -0.021 4.021 6 C -0.093 4.093 7 C -0.117 4.117 8 C -0.143 4.143 9 C -0.017 4.017 10 C -0.025 4.025 11 C -0.551 4.551 12 H 0.092 0.908 13 C -0.133 4.133 14 N -0.538 5.538 15 Si 0.705 3.295 16 H -0.202 1.202 17 H -0.212 1.212 18 H -0.189 1.189 19 C -0.142 4.142 20 C -0.109 4.109 21 C -0.054 4.054 22 Cl -0.028 7.028 23 C -0.130 4.130 24 H 0.090 0.910 25 H 0.086 0.914 26 H 0.086 0.914 27 H 0.145 0.855 28 H 0.150 0.850 29 H 0.132 0.868 30 H 0.139 0.861 31 H 0.047 0.953 32 H 0.042 0.958 33 H 0.074 0.926 34 H 0.139 0.861 35 H 0.132 0.868 36 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -22.076 5.910 4.979 23.389 hybrid contribution 0.877 0.189 0.310 0.949 sum -21.199 6.099 5.289 22.684 Atomic orbital electron populations 1.20778 0.90712 1.02890 1.02471 1.19842 0.96204 0.92455 1.00124 1.21040 0.94005 0.97650 1.00744 1.21222 0.93800 0.97173 0.99377 1.18757 0.93034 0.91362 0.98956 1.18383 0.89882 1.01673 0.99361 1.21004 0.94179 0.98648 0.97821 1.20975 0.93258 1.00731 0.99334 1.20384 0.97708 0.91712 0.91872 1.18853 0.87553 0.98328 0.97786 1.20919 0.92482 1.15661 1.26031 0.90776 1.25003 0.98237 0.95063 0.94955 1.69905 1.14394 1.31979 1.37503 0.86801 0.80814 0.81790 0.80089 1.20154 1.21244 1.18913 1.20987 0.93230 0.99837 1.00171 1.21077 0.94205 0.97557 0.98012 1.21059 0.92169 0.87333 1.04863 1.98395 1.76888 1.30838 1.96681 1.20838 0.91715 0.98600 1.01876 0.91023 0.91445 0.91370 0.85543 0.84962 0.86803 0.86090 0.95324 0.95767 0.92585 0.86129 0.86755 0.85118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.73 10.00 36.01 0.36 -0.37 16 2 C -0.09 -0.82 5.88 -104.56 -0.62 -1.44 16 3 C -0.12 -1.13 9.68 -39.62 -0.38 -1.51 16 4 C -0.10 -1.13 9.52 -39.26 -0.37 -1.50 16 5 C -0.02 -0.28 5.48 -104.87 -0.57 -0.86 16 6 C -0.09 -1.51 5.11 -104.90 -0.54 -2.04 16 7 C -0.10 -1.63 9.52 -39.25 -0.37 -2.00 16 8 C -0.12 -2.37 9.68 -39.63 -0.38 -2.75 16 9 C -0.02 -0.35 5.07 -104.56 -0.53 -0.88 16 10 C 0.01 0.28 4.17 -29.03 -0.12 0.16 16 11 C -0.51 -14.61 9.65 -34.44 -0.33 -14.94 16 12 H 0.07 2.33 7.98 -52.49 -0.42 1.91 16 13 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 14 N -0.90 -27.68 13.96 55.43 0.77 -26.90 16 15 Si 0.88 21.36 27.47 -169.99 -4.67 16.69 16 16 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 17 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 18 H -0.26 -6.14 6.54 56.52 0.37 -5.77 16 19 C -0.12 -2.39 9.68 -39.63 -0.38 -2.78 16 20 C -0.09 -1.55 8.18 -39.25 -0.32 -1.87 16 21 C -0.03 -0.37 6.28 -39.17 -0.25 -0.62 16 22 Cl -0.06 -0.82 25.99 -51.86 -1.35 -2.17 16 23 C -0.11 -1.23 9.47 -39.59 -0.37 -1.61 16 24 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 25 H 0.07 0.39 8.08 -51.93 -0.42 -0.03 16 26 H 0.07 0.37 8.08 -51.93 -0.42 -0.05 16 27 H 0.13 0.90 8.06 -52.49 -0.42 0.48 16 28 H 0.13 1.35 8.05 -52.49 -0.42 0.93 16 29 H 0.11 1.60 8.05 -52.49 -0.42 1.17 16 30 H 0.12 2.19 8.06 -52.49 -0.42 1.76 16 31 H 0.03 0.67 7.14 -51.93 -0.37 0.30 16 32 H 0.02 0.56 7.51 -51.93 -0.39 0.17 16 33 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 34 H 0.12 2.24 8.06 -52.49 -0.42 1.81 16 35 H 0.11 1.78 7.16 -52.48 -0.38 1.40 16 36 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 LS Contribution 321.74 15.07 4.85 4.85 Total: -1.00 -31.02 321.74 -10.20 -41.22 By element: Atomic # 1 Polarization: 3.93 SS G_CDS: -4.52 Total: -0.59 kcal Atomic # 6 Polarization: -27.81 SS G_CDS: -5.29 Total: -33.10 kcal Atomic # 7 Polarization: -27.68 SS G_CDS: 0.77 Total: -26.90 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -4.67 Total: 16.69 kcal Atomic # 17 Polarization: -0.82 SS G_CDS: -1.35 Total: -2.17 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -31.02 -10.20 -41.22 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239862898.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.916 kcal (2) G-P(sol) polarization free energy of solvation -31.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.218 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds