Wall clock time and date at job start Tue Mar 31 2020 06:02:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38354 * 119.86684 * 2 1 4 4 C 1.37998 * 120.14650 * 179.69722 * 3 2 1 5 5 C 1.39350 * 119.88760 * 0.62100 * 4 3 2 6 6 C 1.48378 * 120.12641 * 179.67968 * 5 4 3 7 7 C 1.39367 * 120.12255 * 129.72228 * 6 5 4 8 8 C 1.37994 * 119.87707 * 180.02562 * 7 6 5 9 9 C 1.38339 * 120.11959 * 0.27935 * 8 7 6 10 10 C 1.38301 * 120.24624 * 359.44542 * 9 8 7 11 11 C 1.50707 * 119.93757 * 180.29917 * 10 9 8 12 12 C 1.50705 * 109.47134 * 270.25153 * 11 10 9 13 13 H 1.07999 * 119.99616 * 0.02562 * 12 11 10 14 14 C 1.37875 * 119.99883 * 180.02562 * 12 11 10 15 15 N 1.31513 * 119.99994 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 119.99946 * 180.02562 * 14 12 11 17 17 H 1.48509 * 109.47008 * 359.97438 * 16 14 12 18 18 H 1.48500 * 109.47187 * 119.99362 * 16 14 12 19 19 H 1.48501 * 109.47260 * 239.99664 * 16 14 12 20 20 C 1.38036 * 120.12034 * 0.55024 * 10 9 8 21 21 C 1.39429 * 119.74193 * 359.39784 * 5 4 3 22 22 Cl 1.73608 * 120.07277 * 180.29773 * 21 5 4 23 23 C 1.38157 * 119.85424 * 0.28076 * 21 5 4 24 24 H 1.08992 * 109.47207 * 269.98030 * 1 2 3 25 25 H 1.09003 * 109.47202 * 29.98631 * 1 2 3 26 26 H 1.08997 * 109.46790 * 149.97669 * 1 2 3 27 27 H 1.08003 * 119.92640 * 359.97438 * 3 2 1 28 28 H 1.07996 * 120.06005 * 180.29935 * 4 3 2 29 29 H 1.07999 * 120.06128 * 0.04144 * 7 6 5 30 30 H 1.08002 * 119.93588 * 179.97438 * 8 7 6 31 31 H 1.08006 * 119.87852 * 179.69855 * 9 8 7 32 32 H 1.08999 * 109.47280 * 30.24986 * 11 10 9 33 33 H 1.08998 * 109.46995 * 150.25512 * 11 10 9 34 34 H 0.97005 * 119.99789 * 180.02562 * 15 14 12 35 35 H 1.08003 * 120.05848 * 179.70097 * 20 10 9 36 36 H 1.08000 * 119.94542 * 179.97438 * 23 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1960 1.1998 0.0000 4 6 3.5760 1.2065 0.0063 5 6 4.2763 0.0018 -0.0004 6 6 5.7601 0.0029 -0.0009 7 6 6.4604 -0.7719 0.9219 8 6 7.8403 -0.7667 0.9174 9 6 8.5285 0.0103 0.0028 10 6 7.8387 0.7767 -0.9189 11 6 8.5955 1.6154 -1.9165 12 6 8.8466 2.9830 -1.3352 13 1 8.4938 3.2208 -0.3426 14 6 9.5266 3.9303 -2.0707 15 7 9.9566 3.6404 -3.2793 16 14 9.8385 5.6252 -1.3500 17 1 9.2581 5.6971 0.0151 18 1 11.3012 5.8719 -1.2801 19 1 9.2036 6.6542 -2.2121 20 6 6.4583 0.7790 -0.9234 21 6 3.5773 -1.2046 -0.0008 22 17 4.4411 -2.7105 -0.0013 23 6 2.1957 -1.1990 -0.0003 24 1 -0.3633 -0.0004 1.0276 25 1 -0.3634 0.8901 -0.5136 26 1 -0.3633 -0.8898 -0.5142 27 1 1.6527 2.1332 -0.0004 28 1 4.1124 2.1439 0.0112 29 1 5.9240 -1.3755 1.6391 30 1 8.3839 -1.3664 1.6323 31 1 9.6085 0.0152 0.0058 32 1 9.5480 1.1372 -2.1448 33 1 8.0087 1.7111 -2.8301 34 1 10.4354 4.3069 -3.7966 35 1 5.9207 1.3816 -1.6404 36 1 1.6528 -2.1326 -0.0010 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239862972.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:08 Heat of formation + Delta-G solvation = 19.344732 kcal Electronic energy + Delta-G solvation = -18884.167176 eV Core-core repulsion = 15936.775004 eV Total energy + Delta-G solvation = -2947.392172 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 286.082 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.76946 -38.23923 -36.42268 -33.91574 -33.02037 -31.21544 -30.76127 -30.10260 -27.15036 -26.40204 -23.44254 -22.73914 -22.27476 -20.95175 -19.87533 -16.76910 -16.28461 -15.72634 -15.68916 -15.43432 -14.57408 -14.50765 -13.99014 -13.91643 -13.73756 -12.95619 -12.86530 -12.65749 -12.51890 -12.35716 -11.78317 -11.66200 -11.42132 -11.39528 -11.25606 -11.06525 -10.81099 -10.66259 -10.42994 -10.25384 -9.55276 -9.46463 -8.98685 -8.76982 -8.43993 -8.01461 -7.69390 -6.05590 -4.09466 0.96255 1.19616 2.05279 2.14267 2.20078 3.28126 3.35920 3.40720 3.57030 4.35958 4.51565 4.61070 4.75982 4.82553 5.10421 5.15142 5.29133 5.37765 5.39850 5.52012 5.57042 5.62301 5.72583 5.90266 5.95020 6.07285 6.12199 6.21676 6.38122 6.42980 6.58170 6.76060 6.76841 7.06269 7.15159 7.18664 7.49554 7.70112 7.83345 7.90448 8.30527 8.96108 9.54528 11.04332 Molecular weight = 286.08amu Principal moments of inertia in cm(-1) A = 0.018910 B = 0.004272 C = 0.003695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1480.336026 B = 6552.422058 C = 7576.569199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.085 4.085 3 C -0.115 4.115 4 C -0.092 4.092 5 C -0.023 4.023 6 C -0.068 4.068 7 C -0.119 4.119 8 C -0.125 4.125 9 C -0.114 4.114 10 C -0.036 4.036 11 C 0.047 3.953 12 C -0.511 4.511 13 H 0.058 0.942 14 C 0.058 3.942 15 N -0.894 5.894 16 Si 0.894 3.106 17 H -0.272 1.272 18 H -0.283 1.283 19 H -0.283 1.283 20 C -0.101 4.101 21 C -0.026 4.026 22 Cl -0.065 7.065 23 C -0.114 4.114 24 H 0.070 0.930 25 H 0.068 0.932 26 H 0.066 0.934 27 H 0.128 0.872 28 H 0.137 0.863 29 H 0.112 0.888 30 H 0.113 0.887 31 H 0.118 0.882 32 H 0.029 0.971 33 H 0.028 0.972 34 H 0.261 0.739 35 H 0.118 0.882 36 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.226 -9.439 7.438 20.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.086 4.086 3 C -0.133 4.133 4 C -0.111 4.111 5 C -0.024 4.024 6 C -0.068 4.068 7 C -0.137 4.137 8 C -0.143 4.143 9 C -0.132 4.132 10 C -0.036 4.036 11 C 0.011 3.989 12 C -0.549 4.549 13 H 0.076 0.924 14 C -0.143 4.143 15 N -0.533 5.533 16 Si 0.722 3.278 17 H -0.197 1.197 18 H -0.209 1.209 19 H -0.209 1.209 20 C -0.119 4.119 21 C -0.052 4.052 22 Cl -0.036 7.036 23 C -0.132 4.132 24 H 0.089 0.911 25 H 0.087 0.913 26 H 0.085 0.915 27 H 0.146 0.854 28 H 0.155 0.845 29 H 0.130 0.870 30 H 0.131 0.869 31 H 0.136 0.864 32 H 0.047 0.953 33 H 0.047 0.953 34 H 0.071 0.929 35 H 0.136 0.864 36 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -16.055 -9.504 7.287 20.030 hybrid contribution 0.377 0.841 0.314 0.974 sum -15.678 -8.663 7.601 19.458 Atomic orbital electron populations 1.20775 0.90718 1.02937 1.02389 1.19844 0.96191 0.92447 1.00079 1.21074 0.94021 0.97717 1.00452 1.21329 0.93866 0.97484 0.98382 1.18789 0.93103 0.91378 0.99138 1.18536 0.89916 1.00083 0.98275 1.20902 0.94081 0.99667 0.99093 1.20941 0.93898 1.00093 0.99411 1.21178 0.99985 0.96672 0.95401 1.20602 0.93290 0.93547 0.96153 1.18365 0.94874 0.93324 0.92368 1.21097 1.35958 0.96240 1.01632 0.92403 1.25009 0.95617 0.98819 0.94867 1.69969 1.38319 1.34696 1.10274 0.86497 0.77977 0.84067 0.79287 1.19658 1.20922 1.20941 1.21073 0.94149 0.98251 0.98393 1.20980 0.92065 0.86858 1.05316 1.98363 1.77166 1.31243 1.96795 1.20793 0.91644 0.98531 1.02260 0.91084 0.91291 0.91488 0.85407 0.84540 0.87019 0.86881 0.86371 0.95258 0.95325 0.92889 0.86354 0.85195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.82 10.01 36.01 0.36 -0.46 16 2 C -0.09 -0.90 5.88 -104.57 -0.62 -1.52 16 3 C -0.11 -1.30 9.68 -39.63 -0.38 -1.68 16 4 C -0.09 -1.27 9.52 -39.26 -0.37 -1.64 16 5 C -0.02 -0.36 5.48 -104.86 -0.57 -0.93 16 6 C -0.07 -1.19 5.11 -104.90 -0.54 -1.72 16 7 C -0.12 -1.98 8.18 -39.25 -0.32 -2.30 16 8 C -0.13 -2.12 10.03 -39.63 -0.40 -2.52 16 9 C -0.11 -2.24 9.69 -39.52 -0.38 -2.62 16 10 C -0.04 -0.78 5.06 -104.67 -0.53 -1.31 16 11 C 0.05 1.22 5.10 -29.03 -0.15 1.07 16 12 C -0.51 -14.22 9.09 -34.44 -0.31 -14.53 16 13 H 0.06 1.60 7.74 -52.49 -0.41 1.20 16 14 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 15 N -0.89 -26.30 13.29 55.43 0.74 -25.56 16 16 Si 0.89 21.40 29.54 -169.99 -5.02 16.38 16 17 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 18 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 19 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 20 C -0.10 -2.00 9.17 -39.25 -0.36 -2.36 16 21 C -0.03 -0.35 6.28 -39.17 -0.25 -0.60 16 22 Cl -0.06 -0.88 25.98 -51.86 -1.35 -2.22 16 23 C -0.11 -1.31 9.47 -39.60 -0.37 -1.69 16 24 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 25 H 0.07 0.45 8.08 -51.93 -0.42 0.03 16 26 H 0.07 0.43 8.08 -51.93 -0.42 0.01 16 27 H 0.13 1.14 8.06 -52.48 -0.42 0.72 16 28 H 0.14 1.85 8.04 -52.49 -0.42 1.43 16 29 H 0.11 1.67 7.15 -52.49 -0.38 1.29 16 30 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 31 H 0.12 2.24 8.06 -52.48 -0.42 1.81 16 32 H 0.03 0.79 8.09 -51.93 -0.42 0.37 16 33 H 0.03 0.77 8.08 -51.93 -0.42 0.35 16 34 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 35 H 0.12 2.32 8.05 -52.48 -0.42 1.90 16 36 H 0.13 1.24 8.06 -52.49 -0.42 0.81 16 LS Contribution 325.34 15.07 4.90 4.90 Total: -1.00 -29.80 325.34 -10.58 -40.37 By element: Atomic # 1 Polarization: 3.96 SS G_CDS: -4.55 Total: -0.60 kcal Atomic # 6 Polarization: -27.98 SS G_CDS: -5.29 Total: -33.27 kcal Atomic # 7 Polarization: -26.30 SS G_CDS: 0.74 Total: -25.56 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Atomic # 17 Polarization: -0.88 SS G_CDS: -1.35 Total: -2.22 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -29.80 -10.58 -40.37 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239862972.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.719 kcal (2) G-P(sol) polarization free energy of solvation -29.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.374 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds