Wall clock time and date at job start Tue Mar 31 2020 06:02:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38354 * 119.86684 * 2 1 4 4 C 1.37998 * 120.14650 * 179.69722 * 3 2 1 5 5 C 1.39350 * 119.88760 * 0.62100 * 4 3 2 6 6 C 1.48378 * 120.12641 * 179.67968 * 5 4 3 7 7 C 1.39367 * 120.12255 * 129.72228 * 6 5 4 8 8 C 1.37994 * 119.87707 * 180.02562 * 7 6 5 9 9 C 1.38339 * 120.11959 * 0.27935 * 8 7 6 10 10 C 1.38301 * 120.24624 * 359.44542 * 9 8 7 11 11 C 1.50707 * 119.93757 * 180.29917 * 10 9 8 12 12 C 1.50705 * 109.47134 * 270.25153 * 11 10 9 13 13 H 1.07999 * 119.99616 * 0.02562 * 12 11 10 14 14 C 1.37875 * 119.99883 * 180.02562 * 12 11 10 15 15 N 1.31513 * 119.99994 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 119.99946 * 180.02562 * 14 12 11 17 17 H 1.48509 * 109.47008 * 359.97438 * 16 14 12 18 18 H 1.48500 * 109.47187 * 119.99362 * 16 14 12 19 19 H 1.48501 * 109.47260 * 239.99664 * 16 14 12 20 20 C 1.38036 * 120.12034 * 0.55024 * 10 9 8 21 21 C 1.39429 * 119.74193 * 359.39784 * 5 4 3 22 22 Cl 1.73608 * 120.07277 * 180.29773 * 21 5 4 23 23 C 1.38157 * 119.85424 * 0.28076 * 21 5 4 24 24 H 1.08992 * 109.47207 * 269.98030 * 1 2 3 25 25 H 1.09003 * 109.47202 * 29.98631 * 1 2 3 26 26 H 1.08997 * 109.46790 * 149.97669 * 1 2 3 27 27 H 1.08003 * 119.92640 * 359.97438 * 3 2 1 28 28 H 1.07996 * 120.06005 * 180.29935 * 4 3 2 29 29 H 1.07999 * 120.06128 * 0.04144 * 7 6 5 30 30 H 1.08002 * 119.93588 * 179.97438 * 8 7 6 31 31 H 1.08006 * 119.87852 * 179.69855 * 9 8 7 32 32 H 1.08999 * 109.47280 * 30.24986 * 11 10 9 33 33 H 1.08998 * 109.46995 * 150.25512 * 11 10 9 34 34 H 0.97005 * 119.99789 * 180.02562 * 15 14 12 35 35 H 1.08003 * 120.05848 * 179.70097 * 20 10 9 36 36 H 1.08000 * 119.94542 * 179.97438 * 23 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1960 1.1998 0.0000 4 6 3.5760 1.2065 0.0063 5 6 4.2763 0.0018 -0.0004 6 6 5.7601 0.0029 -0.0009 7 6 6.4604 -0.7719 0.9219 8 6 7.8403 -0.7667 0.9174 9 6 8.5285 0.0103 0.0028 10 6 7.8387 0.7767 -0.9189 11 6 8.5955 1.6154 -1.9165 12 6 8.8466 2.9830 -1.3352 13 1 8.4938 3.2208 -0.3426 14 6 9.5266 3.9303 -2.0707 15 7 9.9566 3.6404 -3.2793 16 14 9.8385 5.6252 -1.3500 17 1 9.2581 5.6971 0.0151 18 1 11.3012 5.8719 -1.2801 19 1 9.2036 6.6542 -2.2121 20 6 6.4583 0.7790 -0.9234 21 6 3.5773 -1.2046 -0.0008 22 17 4.4411 -2.7105 -0.0013 23 6 2.1957 -1.1990 -0.0003 24 1 -0.3633 -0.0004 1.0276 25 1 -0.3634 0.8901 -0.5136 26 1 -0.3633 -0.8898 -0.5142 27 1 1.6527 2.1332 -0.0004 28 1 4.1124 2.1439 0.0112 29 1 5.9240 -1.3755 1.6391 30 1 8.3839 -1.3664 1.6323 31 1 9.6085 0.0152 0.0058 32 1 9.5480 1.1372 -2.1448 33 1 8.0087 1.7111 -2.8301 34 1 10.4354 4.3069 -3.7966 35 1 5.9207 1.3816 -1.6404 36 1 1.6528 -2.1326 -0.0010 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239862972.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:08 Heat of formation + Delta-G solvation = 6.642840 kcal Electronic energy + Delta-G solvation = -18884.717971 eV Core-core repulsion = 15936.775004 eV Total energy + Delta-G solvation = -2947.942967 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 286.082 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.89643 -39.55651 -37.45007 -35.63054 -34.43119 -32.92400 -31.75089 -31.28484 -28.99656 -27.41003 -25.33169 -23.88229 -23.40853 -22.27091 -21.25569 -18.54392 -17.94255 -16.94056 -16.78626 -16.61198 -16.38783 -15.90004 -15.17480 -14.81607 -14.76455 -14.54897 -14.16824 -14.07959 -13.72528 -13.37788 -13.26138 -13.12958 -12.91677 -12.74194 -12.61311 -12.39328 -12.23403 -12.13862 -11.96814 -11.64981 -11.50498 -11.30359 -10.62649 -10.10771 -9.79954 -9.50755 -9.05416 -8.21523 -6.35059 -0.12916 0.23285 0.62512 0.73769 1.16428 1.38688 1.39114 1.52782 2.38523 2.58357 2.99864 3.09288 3.55641 3.82889 3.95801 4.11313 4.16963 4.27775 4.32538 4.36944 4.48876 4.63555 4.73386 4.78206 4.88954 4.93898 4.96888 5.18901 5.19580 5.25481 5.31906 5.36587 5.38387 5.53138 5.61628 5.66456 5.74369 5.86322 6.04831 6.09751 6.23506 6.77524 7.33703 8.88211 Molecular weight = 286.08amu Principal moments of inertia in cm(-1) A = 0.018910 B = 0.004272 C = 0.003695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1480.336026 B = 6552.422058 C = 7576.569199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.075 4.075 3 C -0.114 4.114 4 C -0.105 4.105 5 C -0.055 4.055 6 C -0.057 4.057 7 C -0.114 4.114 8 C -0.113 4.113 9 C -0.130 4.130 10 C -0.063 4.063 11 C 0.058 3.942 12 C -0.527 4.527 13 H 0.054 0.946 14 C 0.005 3.995 15 N -0.930 5.930 16 Si 0.966 3.034 17 H -0.265 1.265 18 H -0.275 1.275 19 H -0.275 1.275 20 C -0.116 4.116 21 C -0.033 4.033 22 Cl -0.068 7.068 23 C -0.114 4.114 24 H 0.086 0.914 25 H 0.080 0.920 26 H 0.079 0.921 27 H 0.154 0.846 28 H 0.128 0.872 29 H 0.135 0.865 30 H 0.149 0.851 31 H 0.117 0.883 32 H 0.004 0.996 33 H 0.000 1.000 34 H 0.266 0.734 35 H 0.107 0.893 36 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.673 -9.709 9.363 23.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.075 4.075 3 C -0.132 4.132 4 C -0.123 4.123 5 C -0.056 4.056 6 C -0.057 4.057 7 C -0.132 4.132 8 C -0.131 4.131 9 C -0.148 4.148 10 C -0.063 4.063 11 C 0.021 3.979 12 C -0.565 4.565 13 H 0.073 0.927 14 C -0.193 4.193 15 N -0.570 5.570 16 Si 0.790 3.210 17 H -0.189 1.189 18 H -0.201 1.201 19 H -0.201 1.201 20 C -0.134 4.134 21 C -0.060 4.060 22 Cl -0.039 7.039 23 C -0.133 4.133 24 H 0.104 0.896 25 H 0.099 0.901 26 H 0.098 0.902 27 H 0.171 0.829 28 H 0.146 0.854 29 H 0.153 0.847 30 H 0.167 0.833 31 H 0.135 0.865 32 H 0.023 0.977 33 H 0.019 0.981 34 H 0.075 0.925 35 H 0.125 0.875 36 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -18.510 -9.784 9.217 22.876 hybrid contribution 0.989 0.852 -0.277 1.334 sum -17.521 -8.932 8.940 21.603 Atomic orbital electron populations 1.20873 0.87913 1.04231 1.03712 1.20292 0.98113 0.91622 0.97480 1.21381 0.93021 0.99386 0.99383 1.21389 0.95161 0.96705 0.99059 1.18749 0.91823 0.92751 1.02256 1.18722 0.91535 0.98508 0.96910 1.21232 0.94122 0.99090 0.98768 1.21262 0.94200 0.98969 0.98680 1.21213 1.00095 0.97439 0.96016 1.20307 0.94066 0.95070 0.96879 1.18096 0.93729 0.93591 0.92523 1.21385 1.36080 0.97464 1.01589 0.92739 1.25929 0.95152 1.03088 0.95152 1.70092 1.39005 1.36270 1.11652 0.85382 0.78114 0.78767 0.78710 1.18907 1.20090 1.20091 1.20987 0.93446 0.99538 0.99448 1.21098 0.92971 0.86168 1.05768 1.98357 1.77446 1.31220 1.96843 1.21123 0.90758 1.00060 1.01346 0.89556 0.90091 0.90221 0.82870 0.85445 0.84672 0.83293 0.86523 0.97744 0.98128 0.92543 0.87475 0.82885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.16 10.01 71.24 0.71 -0.44 16 2 C -0.07 -1.34 5.88 -19.83 -0.12 -1.46 16 3 C -0.11 -2.32 9.68 22.24 0.22 -2.10 16 4 C -0.10 -2.82 9.52 22.48 0.21 -2.61 16 5 C -0.06 -1.65 5.48 -20.02 -0.11 -1.76 16 6 C -0.06 -1.99 5.11 -20.05 -0.10 -2.09 16 7 C -0.11 -3.65 8.18 22.48 0.18 -3.47 16 8 C -0.11 -3.70 10.03 22.24 0.22 -3.47 16 9 C -0.13 -5.19 9.69 22.31 0.22 -4.98 16 10 C -0.06 -2.91 5.06 -19.90 -0.10 -3.01 16 11 C 0.06 3.17 5.10 29.11 0.15 3.32 16 12 C -0.53 -30.61 9.09 25.60 0.23 -30.38 16 13 H 0.05 3.12 7.74 -2.91 -0.02 3.10 16 14 C 0.00 0.28 5.46 84.65 0.46 0.74 16 15 N -0.93 -56.63 13.29 21.45 0.28 -56.34 16 16 Si 0.97 44.58 29.54 68.60 2.03 46.61 16 17 H -0.26 -11.81 7.11 99.48 0.71 -11.11 16 18 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 19 H -0.28 -12.29 7.11 99.48 0.71 -11.59 16 20 C -0.12 -4.84 9.17 22.48 0.21 -4.63 16 21 C -0.03 -0.87 6.28 22.54 0.14 -0.73 16 22 Cl -0.07 -1.73 25.98 -2.72 -0.07 -1.80 16 23 C -0.11 -2.33 9.47 22.26 0.21 -2.12 16 24 H 0.09 0.71 8.14 -2.39 -0.02 0.70 16 25 H 0.08 0.70 8.08 -2.39 -0.02 0.68 16 26 H 0.08 0.68 8.08 -2.39 -0.02 0.66 16 27 H 0.15 2.27 8.06 -2.91 -0.02 2.25 16 28 H 0.13 3.54 8.04 -2.91 -0.02 3.52 16 29 H 0.14 3.70 7.15 -2.91 -0.02 3.68 16 30 H 0.15 3.76 8.06 -2.91 -0.02 3.73 16 31 H 0.12 4.58 8.06 -2.91 -0.02 4.56 16 32 H 0.00 0.25 8.09 -2.39 -0.02 0.23 16 33 H 0.00 0.02 8.08 -2.39 -0.02 0.00 16 34 H 0.27 15.08 8.31 -92.70 -0.77 14.31 16 35 H 0.11 4.55 8.05 -2.91 -0.02 4.53 16 36 H 0.15 2.36 8.06 -2.91 -0.02 2.34 16 Total: -1.00 -66.76 325.34 6.05 -60.72 By element: Atomic # 1 Polarization: 8.92 SS G_CDS: 1.07 Total: 9.99 kcal Atomic # 6 Polarization: -61.91 SS G_CDS: 2.74 Total: -59.18 kcal Atomic # 7 Polarization: -56.63 SS G_CDS: 0.28 Total: -56.34 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 2.03 Total: 46.61 kcal Atomic # 17 Polarization: -1.73 SS G_CDS: -0.07 Total: -1.80 kcal Total: -66.76 6.05 -60.72 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239862972.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.359 kcal (2) G-P(sol) polarization free energy of solvation -66.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.717 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds