Wall clock time and date at job start Tue Mar 31 2020 06:02:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38428 * 119.84778 * 2 1 4 4 C 1.37908 * 120.17699 * 179.74447 * 3 2 1 5 5 C 1.39609 * 119.86444 * 0.55252 * 4 3 2 6 6 C 1.47961 * 120.15102 * 179.72022 * 5 4 3 7 7 C 1.39977 * 119.88017 * 129.74981 * 6 5 4 8 8 C 1.36225 * 120.11726 * 179.97438 * 7 6 5 9 9 C 1.40956 * 119.87746 * 359.97438 * 8 7 6 10 10 C 1.41030 * 120.11243 * 180.29593 * 9 8 7 11 11 H 1.07998 * 119.99503 * 153.32068 * 10 9 8 12 12 C 1.39999 * 119.99776 * 333.32162 * 10 9 8 13 13 N 1.30795 * 120.00432 * 344.01964 * 12 10 9 14 14 Si 1.86800 * 119.99630 * 164.03072 * 12 10 9 15 15 H 1.48498 * 109.47531 * 59.99284 * 14 12 10 16 16 H 1.48504 * 109.47118 * 179.97438 * 14 12 10 17 17 H 1.48497 * 109.46929 * 299.99235 * 14 12 10 18 18 C 1.40914 * 119.77139 * 0.02562 * 9 8 7 19 19 C 1.50700 * 120.06256 * 180.02562 * 18 9 8 20 20 C 1.36262 * 119.87452 * 0.02562 * 18 9 8 21 21 C 1.39711 * 119.69875 * 359.44676 * 5 4 3 22 22 Cl 1.73603 * 120.09146 * 180.29116 * 21 5 4 23 23 C 1.38095 * 119.81931 * 0.27712 * 21 5 4 24 24 H 1.09007 * 109.46933 * 269.97944 * 1 2 3 25 25 H 1.08996 * 109.47396 * 29.97653 * 1 2 3 26 26 H 1.08994 * 109.47330 * 149.98022 * 1 2 3 27 27 H 1.08009 * 119.90863 * 0.02562 * 3 2 1 28 28 H 1.08005 * 120.06406 * 180.29970 * 4 3 2 29 29 H 1.08000 * 119.94191 * 359.97438 * 7 6 5 30 30 H 1.07995 * 120.05959 * 180.02562 * 8 7 6 31 31 H 0.97004 * 120.00408 * 180.02562 * 13 12 10 32 32 H 1.09006 * 109.46811 * 90.00321 * 19 18 9 33 33 H 1.08997 * 109.46879 * 210.00252 * 19 18 9 34 34 H 1.09001 * 109.46952 * 330.00406 * 19 18 9 35 35 H 1.08002 * 119.93890 * 179.97438 * 20 18 9 36 36 H 1.08007 * 119.93681 * 179.97438 * 23 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1959 1.2007 0.0000 4 6 3.5750 1.2086 0.0053 5 6 4.2772 0.0019 -0.0010 6 6 5.7568 0.0031 -0.0016 7 6 6.4551 -0.7771 0.9274 8 6 7.8173 -0.7801 0.9309 9 6 8.5236 0.0040 -0.0037 10 6 9.9339 -0.0002 -0.0086 11 1 10.4712 0.2160 -0.9202 12 6 10.6371 -0.2846 1.1680 13 7 10.0253 -0.2382 2.3231 14 14 12.4495 -0.7301 1.0883 15 1 13.2086 0.3912 0.4787 16 1 12.9578 -0.9833 2.4605 17 1 12.6229 -1.9521 0.2625 18 6 7.8156 0.7875 -0.9367 19 6 8.5640 1.6277 -1.9392 20 6 6.4530 0.7840 -0.9308 21 6 3.5764 -1.2067 -0.0009 22 17 4.4392 -2.7131 -0.0010 23 6 2.1954 -1.1998 -0.0004 24 1 -0.3633 -0.0004 1.0277 25 1 -0.3634 0.8901 -0.5134 26 1 -0.3634 -0.8897 -0.5141 27 1 1.6519 2.1337 0.0004 28 1 4.1107 2.1464 0.0102 29 1 5.9130 -1.3777 1.6428 30 1 8.3552 -1.3826 1.6477 31 1 10.5126 -0.4350 3.1384 32 1 8.7435 1.0430 -2.8414 33 1 7.9724 2.5085 -2.1887 34 1 9.5174 1.9393 -1.5124 35 1 5.9093 1.3845 -1.6451 36 1 1.6518 -2.1331 -0.0008 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239863257.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:11 Heat of formation + Delta-G solvation = 13.261421 kcal Electronic energy + Delta-G solvation = -19211.846068 eV Core-core repulsion = 16264.190104 eV Total energy + Delta-G solvation = -2947.655964 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 286.082 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.19076 -37.61284 -35.93500 -34.09275 -32.74852 -31.24402 -30.38735 -29.54744 -27.01648 -26.00928 -24.24442 -22.36483 -21.59501 -20.35480 -19.39411 -17.27252 -16.19741 -15.43917 -15.19885 -15.08451 -14.09794 -13.93425 -13.59042 -13.51910 -13.28031 -12.67720 -12.60904 -12.44015 -12.27804 -11.82416 -11.81130 -11.38660 -11.20296 -11.18379 -11.06756 -10.88667 -10.83927 -10.67676 -10.36247 -10.17552 -9.57199 -9.34544 -9.21798 -8.52962 -8.23123 -7.39222 -7.11722 -6.82790 -4.40468 1.47393 1.59411 2.68943 2.73854 3.01670 3.03977 3.09158 3.15664 3.85491 4.00319 4.56329 4.99638 5.09317 5.26467 5.42565 5.57901 5.61404 5.63965 5.79254 5.88001 6.12246 6.18504 6.28821 6.34630 6.39799 6.57950 6.65608 6.72087 6.73881 6.82728 6.96932 7.01038 7.18391 7.24898 7.37056 7.62549 7.86477 8.00493 8.07342 8.23469 8.56061 8.80222 8.91807 10.07739 Molecular weight = 286.08amu Principal moments of inertia in cm(-1) A = 0.027183 B = 0.004340 C = 0.004026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.803762 B = 6449.789912 C = 6953.681094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.110 4.110 3 C -0.114 4.114 4 C -0.115 4.115 5 C 0.022 3.978 6 C -0.205 4.205 7 C -0.065 4.065 8 C -0.168 4.168 9 C 0.125 3.875 10 C -0.450 4.450 11 H 0.082 0.918 12 C 0.075 3.925 13 N -0.784 5.784 14 Si 0.909 3.091 15 H -0.264 1.264 16 H -0.277 1.277 17 H -0.263 1.263 18 C -0.204 4.204 19 C -0.084 4.084 20 C -0.058 4.058 21 C -0.042 4.042 22 Cl -0.069 7.069 23 C -0.110 4.110 24 H 0.065 0.935 25 H 0.063 0.937 26 H 0.062 0.938 27 H 0.119 0.881 28 H 0.127 0.873 29 H 0.089 0.911 30 H 0.117 0.883 31 H 0.283 0.717 32 H 0.040 0.960 33 H 0.037 0.963 34 H 0.060 0.940 35 H 0.088 0.912 36 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.826 0.099 -2.471 11.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.110 4.110 3 C -0.132 4.132 4 C -0.133 4.133 5 C 0.021 3.979 6 C -0.206 4.206 7 C -0.083 4.083 8 C -0.188 4.188 9 C 0.123 3.877 10 C -0.478 4.478 11 H 0.100 0.900 12 C -0.144 4.144 13 N -0.408 5.408 14 Si 0.733 3.267 15 H -0.189 1.189 16 H -0.202 1.202 17 H -0.187 1.187 18 C -0.205 4.205 19 C -0.141 4.141 20 C -0.076 4.076 21 C -0.069 4.069 22 Cl -0.040 7.040 23 C -0.129 4.129 24 H 0.084 0.916 25 H 0.082 0.918 26 H 0.081 0.919 27 H 0.137 0.863 28 H 0.145 0.855 29 H 0.107 0.893 30 H 0.135 0.865 31 H 0.094 0.906 32 H 0.059 0.941 33 H 0.056 0.944 34 H 0.079 0.921 35 H 0.106 0.894 36 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -10.689 -0.057 -2.206 10.915 hybrid contribution 0.873 -0.344 0.169 0.954 sum -9.816 -0.401 -2.037 10.033 Atomic orbital electron populations 1.20693 0.91287 1.02342 1.01921 1.19681 0.95695 0.92545 1.03104 1.20961 0.94182 0.97187 1.00876 1.21286 0.93446 0.97550 1.01044 1.18932 0.94187 0.90412 0.94367 1.17893 0.88438 1.09734 1.04584 1.20437 0.94468 0.96821 0.96619 1.20938 0.92364 1.02515 1.02941 1.17552 0.93084 0.87633 0.89456 1.19623 0.91703 1.40489 0.96029 0.89997 1.25983 1.01113 0.92461 0.94855 1.69803 1.38769 1.33365 0.98844 0.86354 0.81752 0.80273 0.78348 1.18875 1.20242 1.18705 1.19406 0.92758 1.04511 1.03835 1.20396 0.99791 0.97049 0.96845 1.20120 0.93490 0.97305 0.96729 1.21106 0.91708 0.87226 1.06843 1.98345 1.77449 1.31306 1.96862 1.20734 0.91878 0.98083 1.02177 0.91592 0.91801 0.91901 0.86279 0.85499 0.89278 0.86535 0.90588 0.94082 0.94395 0.92063 0.89396 0.85884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.04 10.00 36.01 0.36 -0.68 16 2 C -0.11 -1.49 5.89 -104.52 -0.62 -2.11 16 3 C -0.11 -1.61 9.68 -39.63 -0.38 -1.99 16 4 C -0.11 -1.93 9.51 -39.19 -0.37 -2.30 16 5 C 0.02 0.42 5.47 -104.85 -0.57 -0.15 16 6 C -0.21 -4.55 5.14 -104.63 -0.54 -5.09 16 7 C -0.06 -1.53 8.10 -39.65 -0.32 -1.85 16 8 C -0.17 -4.32 8.62 -39.28 -0.34 -4.66 16 9 C 0.13 3.24 5.56 -106.80 -0.59 2.65 16 10 C -0.45 -11.45 8.09 -37.86 -0.31 -11.75 16 11 H 0.08 1.99 6.89 -52.49 -0.36 1.63 16 12 C 0.08 1.82 5.16 -17.33 -0.09 1.73 16 13 N -0.78 -19.70 10.97 55.55 0.61 -19.09 16 14 Si 0.91 18.11 29.59 -169.99 -5.03 13.08 16 15 H -0.26 -5.19 7.11 56.52 0.40 -4.78 16 16 H -0.28 -5.41 7.11 56.52 0.40 -5.00 16 17 H -0.26 -5.22 7.11 56.52 0.40 -4.82 16 18 C -0.20 -4.83 5.90 -104.32 -0.62 -5.45 16 19 C -0.08 -1.71 9.39 36.01 0.34 -1.37 16 20 C -0.06 -1.30 9.08 -39.66 -0.36 -1.66 16 21 C -0.04 -0.75 6.28 -39.08 -0.25 -1.00 16 22 Cl -0.07 -1.24 25.97 -51.86 -1.35 -2.58 16 23 C -0.11 -1.65 9.47 -39.60 -0.37 -2.03 16 24 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.06 0.55 8.08 -51.93 -0.42 0.13 16 26 H 0.06 0.56 8.08 -51.93 -0.42 0.14 16 27 H 0.12 1.35 8.06 -52.48 -0.42 0.92 16 28 H 0.13 2.03 8.04 -52.48 -0.42 1.61 16 29 H 0.09 2.00 7.14 -52.49 -0.37 1.63 16 30 H 0.12 3.10 6.23 -52.49 -0.33 2.77 16 31 H 0.28 6.50 8.30 -40.82 -0.34 6.16 16 32 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.04 0.68 8.08 -51.93 -0.42 0.26 16 34 H 0.06 1.27 6.79 -51.93 -0.35 0.92 16 35 H 0.09 1.77 8.04 -52.49 -0.42 1.35 16 36 H 0.12 1.59 8.06 -52.48 -0.42 1.17 16 LS Contribution 317.24 15.07 4.78 4.78 Total: -1.00 -26.56 317.24 -10.36 -36.92 By element: Atomic # 1 Polarization: 8.93 SS G_CDS: -4.34 Total: 4.59 kcal Atomic # 6 Polarization: -32.67 SS G_CDS: -5.03 Total: -37.70 kcal Atomic # 7 Polarization: -19.70 SS G_CDS: 0.61 Total: -19.09 kcal Atomic # 14 Polarization: 18.11 SS G_CDS: -5.03 Total: 13.08 kcal Atomic # 17 Polarization: -1.24 SS G_CDS: -1.35 Total: -2.58 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -26.56 -10.36 -36.92 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239863257.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.179 kcal (2) G-P(sol) polarization free energy of solvation -26.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.918 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds