Wall clock time and date at job start Tue Mar 31 2020 06:02:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38428 * 119.84778 * 2 1 4 4 C 1.37908 * 120.17699 * 179.74447 * 3 2 1 5 5 C 1.39609 * 119.86444 * 0.55252 * 4 3 2 6 6 C 1.47961 * 120.15102 * 179.72022 * 5 4 3 7 7 C 1.39977 * 119.88017 * 129.74981 * 6 5 4 8 8 C 1.36225 * 120.11726 * 179.97438 * 7 6 5 9 9 C 1.40956 * 119.87746 * 359.97438 * 8 7 6 10 10 C 1.41030 * 120.11243 * 180.29593 * 9 8 7 11 11 H 1.07998 * 119.99503 * 153.32068 * 10 9 8 12 12 C 1.39999 * 119.99776 * 333.32162 * 10 9 8 13 13 N 1.30795 * 120.00432 * 344.01964 * 12 10 9 14 14 Si 1.86800 * 119.99630 * 164.03072 * 12 10 9 15 15 H 1.48498 * 109.47531 * 59.99284 * 14 12 10 16 16 H 1.48504 * 109.47118 * 179.97438 * 14 12 10 17 17 H 1.48497 * 109.46929 * 299.99235 * 14 12 10 18 18 C 1.40914 * 119.77139 * 0.02562 * 9 8 7 19 19 C 1.50700 * 120.06256 * 180.02562 * 18 9 8 20 20 C 1.36262 * 119.87452 * 0.02562 * 18 9 8 21 21 C 1.39711 * 119.69875 * 359.44676 * 5 4 3 22 22 Cl 1.73603 * 120.09146 * 180.29116 * 21 5 4 23 23 C 1.38095 * 119.81931 * 0.27712 * 21 5 4 24 24 H 1.09007 * 109.46933 * 269.97944 * 1 2 3 25 25 H 1.08996 * 109.47396 * 29.97653 * 1 2 3 26 26 H 1.08994 * 109.47330 * 149.98022 * 1 2 3 27 27 H 1.08009 * 119.90863 * 0.02562 * 3 2 1 28 28 H 1.08005 * 120.06406 * 180.29970 * 4 3 2 29 29 H 1.08000 * 119.94191 * 359.97438 * 7 6 5 30 30 H 1.07995 * 120.05959 * 180.02562 * 8 7 6 31 31 H 0.97004 * 120.00408 * 180.02562 * 13 12 10 32 32 H 1.09006 * 109.46811 * 90.00321 * 19 18 9 33 33 H 1.08997 * 109.46879 * 210.00252 * 19 18 9 34 34 H 1.09001 * 109.46952 * 330.00406 * 19 18 9 35 35 H 1.08002 * 119.93890 * 179.97438 * 20 18 9 36 36 H 1.08007 * 119.93681 * 179.97438 * 23 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1959 1.2007 0.0000 4 6 3.5750 1.2086 0.0053 5 6 4.2772 0.0019 -0.0010 6 6 5.7568 0.0031 -0.0016 7 6 6.4551 -0.7771 0.9274 8 6 7.8173 -0.7801 0.9309 9 6 8.5236 0.0040 -0.0037 10 6 9.9339 -0.0002 -0.0086 11 1 10.4712 0.2160 -0.9202 12 6 10.6371 -0.2846 1.1680 13 7 10.0253 -0.2382 2.3231 14 14 12.4495 -0.7301 1.0883 15 1 13.2086 0.3912 0.4787 16 1 12.9578 -0.9833 2.4605 17 1 12.6229 -1.9521 0.2625 18 6 7.8156 0.7875 -0.9367 19 6 8.5640 1.6277 -1.9392 20 6 6.4530 0.7840 -0.9308 21 6 3.5764 -1.2067 -0.0009 22 17 4.4392 -2.7131 -0.0010 23 6 2.1954 -1.1998 -0.0004 24 1 -0.3633 -0.0004 1.0277 25 1 -0.3634 0.8901 -0.5134 26 1 -0.3634 -0.8897 -0.5141 27 1 1.6519 2.1337 0.0004 28 1 4.1107 2.1464 0.0102 29 1 5.9130 -1.3777 1.6428 30 1 8.3552 -1.3826 1.6477 31 1 10.5126 -0.4350 3.1384 32 1 8.7435 1.0430 -2.8414 33 1 7.9724 2.5085 -2.1887 34 1 9.5174 1.9393 -1.5124 35 1 5.9093 1.3845 -1.6451 36 1 1.6518 -2.1331 -0.0008 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239863257.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:11 Heat of formation + Delta-G solvation = 3.332132 kcal Electronic energy + Delta-G solvation = -19212.276634 eV Core-core repulsion = 16264.190104 eV Total energy + Delta-G solvation = -2948.086530 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 286.082 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.56097 -39.27679 -37.30021 -35.79256 -34.23712 -32.86260 -31.62453 -31.18933 -28.48338 -27.60117 -25.83819 -23.66993 -23.07352 -21.96830 -21.02424 -19.11471 -17.64034 -17.08918 -16.51022 -16.37168 -15.76187 -15.55738 -14.91526 -14.70631 -14.64118 -14.33010 -14.21364 -13.76130 -13.46976 -13.31989 -13.17013 -12.94687 -12.81406 -12.80523 -12.52950 -12.37881 -12.14363 -12.11844 -11.89544 -11.68913 -11.32809 -11.07529 -11.02417 -9.81590 -9.62655 -9.21753 -8.84419 -8.60544 -6.29175 0.15122 0.35530 1.04771 1.21817 1.34717 1.37782 1.48664 1.54580 2.19208 2.64389 2.84619 3.70532 3.92405 3.97564 4.10618 4.38111 4.43151 4.46598 4.50976 4.65537 4.74153 4.88408 4.91987 4.98421 5.01544 5.04341 5.14580 5.23384 5.30353 5.33333 5.41180 5.47665 5.58454 5.61963 5.79925 5.94771 6.09130 6.17154 6.23450 6.38831 6.69768 6.93896 7.06333 8.31264 Molecular weight = 286.08amu Principal moments of inertia in cm(-1) A = 0.027183 B = 0.004340 C = 0.004026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.803762 B = 6449.789912 C = 6953.681094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.094 4.094 3 C -0.109 4.109 4 C -0.118 4.118 5 C -0.019 4.019 6 C -0.191 4.191 7 C -0.073 4.073 8 C -0.192 4.192 9 C 0.092 3.908 10 C -0.483 4.483 11 H 0.083 0.917 12 C 0.035 3.965 13 N -0.821 5.821 14 Si 0.979 3.021 15 H -0.256 1.256 16 H -0.270 1.270 17 H -0.262 1.262 18 C -0.217 4.217 19 C -0.078 4.078 20 C -0.069 4.069 21 C -0.054 4.054 22 Cl -0.082 7.082 23 C -0.115 4.115 24 H 0.080 0.920 25 H 0.083 0.917 26 H 0.075 0.925 27 H 0.155 0.845 28 H 0.130 0.870 29 H 0.091 0.909 30 H 0.096 0.904 31 H 0.288 0.712 32 H 0.052 0.948 33 H 0.061 0.939 34 H 0.051 0.949 35 H 0.112 0.888 36 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.365 1.025 -3.349 13.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.094 4.094 3 C -0.127 4.127 4 C -0.136 4.136 5 C -0.020 4.020 6 C -0.192 4.192 7 C -0.091 4.091 8 C -0.211 4.211 9 C 0.090 3.910 10 C -0.512 4.512 11 H 0.102 0.898 12 C -0.181 4.181 13 N -0.447 5.447 14 Si 0.800 3.200 15 H -0.180 1.180 16 H -0.194 1.194 17 H -0.186 1.186 18 C -0.218 4.218 19 C -0.135 4.135 20 C -0.087 4.087 21 C -0.080 4.080 22 Cl -0.054 7.054 23 C -0.133 4.133 24 H 0.099 0.901 25 H 0.102 0.898 26 H 0.094 0.906 27 H 0.173 0.827 28 H 0.148 0.852 29 H 0.109 0.891 30 H 0.114 0.886 31 H 0.098 0.902 32 H 0.071 0.929 33 H 0.080 0.920 34 H 0.070 0.930 35 H 0.130 0.870 36 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -13.247 0.875 -3.091 13.631 hybrid contribution 1.293 -0.597 0.415 1.483 sum -11.955 0.278 -2.676 12.254 Atomic orbital electron populations 1.20806 0.87994 1.04046 1.03351 1.20226 0.97957 0.91593 0.99611 1.21352 0.93078 0.99058 0.99219 1.21409 0.94857 0.96601 1.00756 1.18897 0.92608 0.92203 0.98274 1.18207 0.90547 1.07580 1.02846 1.20511 0.93830 0.97495 0.97308 1.20889 0.93277 1.03441 1.03518 1.17885 0.93882 0.88697 0.90583 1.19824 0.91998 1.42668 0.96731 0.89847 1.26799 1.05445 0.91751 0.94084 1.69874 1.40617 1.34635 0.99538 0.85290 0.76230 0.79930 0.78549 1.18005 1.19409 1.18643 1.19855 0.93728 1.04301 1.03914 1.20372 0.99312 0.97561 0.96253 1.20416 0.93248 0.97806 0.97230 1.21293 0.92855 0.86290 1.07582 1.98339 1.77987 1.32050 1.96976 1.21056 0.90698 0.99929 1.01637 0.90100 0.89847 0.90612 0.82708 0.85231 0.89079 0.88632 0.90156 0.92936 0.91973 0.93012 0.87004 0.83761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.51 10.00 71.24 0.71 -0.80 16 2 C -0.09 -2.14 5.89 -19.80 -0.12 -2.26 16 3 C -0.11 -2.64 9.68 22.24 0.22 -2.42 16 4 C -0.12 -3.70 9.51 22.52 0.21 -3.48 16 5 C -0.02 -0.72 5.47 -20.01 -0.11 -0.83 16 6 C -0.19 -8.57 5.14 -19.87 -0.10 -8.67 16 7 C -0.07 -3.59 8.10 22.22 0.18 -3.41 16 8 C -0.19 -10.44 8.62 22.47 0.19 -10.25 16 9 C 0.09 4.98 5.56 -21.27 -0.12 4.86 16 10 C -0.48 -25.69 8.09 23.38 0.19 -25.51 16 11 H 0.08 4.22 6.89 -2.91 -0.02 4.20 16 12 C 0.03 1.75 5.16 85.27 0.44 2.19 16 13 N -0.82 -43.36 10.97 21.84 0.24 -43.12 16 14 Si 0.98 38.15 29.59 68.60 2.03 40.18 16 15 H -0.26 -9.54 7.11 99.48 0.71 -8.83 16 16 H -0.27 -10.02 7.11 99.48 0.71 -9.31 16 17 H -0.26 -10.07 7.11 99.48 0.71 -9.36 16 18 C -0.22 -10.47 5.90 -19.67 -0.12 -10.59 16 19 C -0.08 -3.17 9.39 71.24 0.67 -2.50 16 20 C -0.07 -3.08 9.08 22.22 0.20 -2.88 16 21 C -0.05 -1.86 6.28 22.59 0.14 -1.72 16 22 Cl -0.08 -2.99 25.97 -2.72 -0.07 -3.06 16 23 C -0.11 -3.13 9.47 22.26 0.21 -2.92 16 24 H 0.08 1.01 8.14 -2.38 -0.02 0.99 16 25 H 0.08 0.93 8.08 -2.39 -0.02 0.91 16 26 H 0.07 0.94 8.08 -2.39 -0.02 0.93 16 27 H 0.16 2.65 8.06 -2.91 -0.02 2.63 16 28 H 0.13 3.91 8.04 -2.91 -0.02 3.88 16 29 H 0.09 4.31 7.14 -2.91 -0.02 4.29 16 30 H 0.10 5.48 6.23 -2.91 -0.02 5.46 16 31 H 0.29 13.82 8.30 -92.71 -0.77 13.05 16 32 H 0.05 1.97 8.14 -2.38 -0.02 1.96 16 33 H 0.06 2.16 8.08 -2.39 -0.02 2.14 16 34 H 0.05 2.17 6.79 -2.39 -0.02 2.15 16 35 H 0.11 4.37 8.04 -2.91 -0.02 4.35 16 36 H 0.14 3.27 8.06 -2.91 -0.02 3.24 16 Total: -1.00 -60.61 317.24 6.09 -54.52 By element: Atomic # 1 Polarization: 21.59 SS G_CDS: 1.09 Total: 22.68 kcal Atomic # 6 Polarization: -74.00 SS G_CDS: 2.81 Total: -71.20 kcal Atomic # 7 Polarization: -43.36 SS G_CDS: 0.24 Total: -43.12 kcal Atomic # 14 Polarization: 38.15 SS G_CDS: 2.03 Total: 40.18 kcal Atomic # 17 Polarization: -2.99 SS G_CDS: -0.07 Total: -3.06 kcal Total: -60.61 6.09 -54.52 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239863257.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.855 kcal (2) G-P(sol) polarization free energy of solvation -60.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.523 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds