Wall clock time and date at job start Tue Mar 31 2020 05:43:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30861 * 1 3 3 Si 1.86790 * 120.00226 * 2 1 4 4 H 1.48502 * 109.47156 * 269.99835 * 3 2 1 5 5 H 1.48501 * 109.47403 * 30.00097 * 3 2 1 6 6 H 1.48505 * 109.47108 * 149.99882 * 3 2 1 7 7 C 1.39900 * 119.99599 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99897 * 163.04642 * 7 2 1 9 9 C 1.41382 * 120.00133 * 343.04863 * 7 2 1 10 10 C 1.40815 * 120.56970 * 155.71143 * 9 7 2 11 11 N 1.31504 * 120.71220 * 179.97438 * 10 9 7 12 12 C 1.32157 * 122.08726 * 359.97438 * 11 10 9 13 13 F 1.35107 * 119.46085 * 180.02562 * 12 11 10 14 14 C 1.40116 * 121.07407 * 359.97438 * 12 11 10 15 15 C 1.48251 * 120.42897 * 180.02562 * 14 12 11 16 16 C 1.39520 * 119.97472 * 310.00323 * 15 14 12 17 17 C 1.37652 * 120.02235 * 180.02562 * 16 15 14 18 18 C 1.39719 * 119.97966 * 359.97438 * 17 16 15 19 19 C 1.47701 * 120.02573 * 180.02562 * 18 17 16 20 20 N 1.34777 * 119.99937 * 179.97438 * 19 18 17 21 21 O 1.21573 * 120.00028 * 359.97438 * 19 18 17 22 22 C 1.39724 * 119.94815 * 0.27168 * 18 17 16 23 23 C 1.37658 * 119.97571 * 359.44831 * 22 18 17 24 24 C 1.39097 * 119.14361 * 0.27690 * 14 12 11 25 25 H 0.97006 * 119.99565 * 0.02562 * 1 2 3 26 26 H 1.07994 * 119.64213 * 359.97438 * 10 9 7 27 27 H 1.07998 * 119.99196 * 359.97438 * 16 15 14 28 28 H 1.08005 * 120.00876 * 179.97438 * 17 16 15 29 29 H 0.97006 * 119.99971 * 0.02562 * 20 19 18 30 30 H 0.96997 * 120.00354 * 179.72351 * 20 19 18 31 31 H 1.07996 * 120.00814 * 179.72894 * 22 18 17 32 32 H 1.07993 * 119.98535 * 180.29695 * 23 22 18 33 33 H 1.08000 * 120.94156 * 179.71123 * 24 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2426 1.6176 0.0000 4 1 2.4902 2.0463 -1.4001 5 1 1.4402 2.6526 0.7001 6 1 3.5402 1.4400 0.7001 7 6 2.0080 -1.2116 0.0005 8 1 3.0528 -1.2321 -0.2722 9 6 1.3471 -2.4092 0.3581 10 6 1.8227 -3.6535 -0.0987 11 7 1.2104 -4.7692 0.2325 12 6 0.1344 -4.7784 0.9997 13 9 -0.4522 -5.9559 1.3075 14 6 -0.4073 -3.5870 1.5001 15 6 -1.6146 -3.6140 2.3600 16 6 -2.7421 -4.3297 1.9562 17 6 -3.8639 -4.3551 2.7537 18 6 -3.8729 -3.6641 3.9681 19 6 -5.0758 -3.6911 4.8248 20 7 -5.0837 -3.0248 5.9963 21 8 -6.0586 -4.3142 4.4732 22 6 -2.7450 -2.9435 4.3690 23 6 -1.6223 -2.9242 3.5727 24 6 0.1992 -2.3781 1.1752 25 1 -0.4850 0.8401 -0.0004 26 1 2.6996 -3.6918 -0.7278 27 1 -2.7352 -4.8634 1.0174 28 1 -4.7367 -4.9088 2.4407 29 1 -4.2996 -2.5273 6.2767 30 1 -5.8750 -3.0392 6.5571 31 1 -2.7525 -2.4055 5.3054 32 1 -0.7487 -2.3712 3.8847 33 1 -0.1966 -1.4422 1.5410 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239873616.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:45 Heat of formation + Delta-G solvation = -40.209963 kcal Electronic energy + Delta-G solvation = -21094.518644 eV Core-core repulsion = 17612.667268 eV Total energy + Delta-G solvation = -3481.851376 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 286.086 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -47.66151 -39.96686 -38.68757 -37.65237 -34.29361 -33.93522 -32.49792 -30.75258 -30.45691 -28.77900 -25.64292 -24.20632 -22.69070 -21.71893 -21.38196 -20.17842 -18.22896 -17.60389 -16.83234 -16.72960 -16.00356 -15.66739 -14.97450 -14.92245 -14.82049 -14.69828 -14.16581 -13.71450 -13.38258 -13.16249 -12.68961 -12.50070 -12.29051 -12.11129 -11.87401 -11.72124 -11.36182 -11.33098 -10.91747 -10.74972 -10.27713 -10.04346 -9.81009 -9.58232 -9.12546 -8.78784 -8.54313 -8.15850 -7.62779 -7.11575 -4.72686 0.89966 1.62415 2.20092 2.55025 2.89551 2.90348 2.96813 3.03384 3.47517 3.67070 4.06493 4.27796 4.81106 4.90684 5.03211 5.13338 5.23429 5.26665 5.60137 5.68397 5.92469 6.04774 6.22225 6.38133 6.41973 6.48364 6.55444 6.68467 6.80246 6.82254 6.93381 7.08208 7.25784 7.33165 7.50526 7.65308 8.10313 8.20190 8.36050 8.38339 9.11492 9.80005 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.016891 B = 0.004823 C = 0.003933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1657.257340 B = 5804.667709 C = 7118.379642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.783 5.783 2 C 0.073 3.927 3 Si 0.915 3.085 4 H -0.266 1.266 5 H -0.273 1.273 6 H -0.257 1.257 7 C -0.438 4.438 8 H 0.089 0.911 9 C 0.054 3.946 10 C 0.014 3.986 11 N -0.488 5.488 12 C 0.166 3.834 13 F -0.144 7.144 14 C -0.112 4.112 15 C 0.022 3.978 16 C -0.112 4.112 17 C -0.056 4.056 18 C -0.160 4.160 19 C 0.568 3.432 20 N -0.855 5.855 21 O -0.548 6.548 22 C -0.085 4.085 23 C -0.117 4.117 24 C -0.094 4.094 25 H 0.288 0.712 26 H 0.140 0.860 27 H 0.130 0.870 28 H 0.133 0.867 29 H 0.401 0.599 30 H 0.401 0.599 31 H 0.123 0.877 32 H 0.130 0.870 33 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.817 2.033 8.536 9.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.407 5.407 2 C -0.147 4.147 3 Si 0.739 3.261 4 H -0.191 1.191 5 H -0.198 1.198 6 H -0.181 1.181 7 C -0.467 4.467 8 H 0.107 0.893 9 C 0.049 3.951 10 C -0.148 4.148 11 N -0.200 5.200 12 C 0.012 3.988 13 F -0.124 7.124 14 C -0.116 4.116 15 C 0.021 3.979 16 C -0.131 4.131 17 C -0.075 4.075 18 C -0.163 4.163 19 C 0.356 3.644 20 N -0.418 5.418 21 O -0.426 6.426 22 C -0.104 4.104 23 C -0.135 4.135 24 C -0.119 4.119 25 H 0.099 0.901 26 H 0.157 0.843 27 H 0.148 0.852 28 H 0.151 0.849 29 H 0.231 0.769 30 H 0.232 0.768 31 H 0.140 0.860 32 H 0.148 0.852 33 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -4.287 0.909 7.865 9.004 hybrid contribution -0.002 1.649 0.631 1.766 sum -4.289 2.558 8.497 9.855 Atomic orbital electron populations 1.69770 1.07770 1.30263 1.32865 1.26031 0.94861 1.01933 0.91907 0.86169 0.80589 0.79696 0.79657 1.19098 1.19815 1.18095 1.19580 0.98154 0.90478 1.38528 0.89276 1.18487 0.92228 0.93880 0.90490 1.22341 1.02000 0.86535 1.03904 1.66292 1.07642 1.33775 1.12265 1.17510 0.95886 0.79660 1.05773 1.91417 1.82531 1.46547 1.91861 1.19176 0.96688 0.93774 1.01951 1.19053 0.92730 0.93282 0.92829 1.21255 0.92153 0.99388 1.00255 1.21115 0.98065 0.96118 0.92159 1.19742 0.94424 1.04670 0.97490 1.18338 0.87363 0.77806 0.80913 1.43763 1.20399 1.54940 1.22746 1.90790 1.35638 1.43198 1.72978 1.21080 0.92494 0.97688 0.99109 1.21169 0.98397 0.99981 0.93962 1.21758 0.96948 0.95364 0.97800 0.90072 0.84286 0.85220 0.84885 0.76945 0.76796 0.85963 0.85167 0.84166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -17.85 10.92 55.54 0.61 -17.24 16 2 C 0.07 1.59 5.18 -17.34 -0.09 1.50 16 3 Si 0.92 16.31 29.59 -169.99 -5.03 11.28 16 4 H -0.27 -4.74 7.11 56.52 0.40 -4.34 16 5 H -0.27 -4.80 7.11 56.52 0.40 -4.39 16 6 H -0.26 -4.54 7.11 56.52 0.40 -4.14 16 7 C -0.44 -10.10 9.08 -37.76 -0.34 -10.44 16 8 H 0.09 1.92 7.90 -52.49 -0.41 1.51 16 9 C 0.05 1.28 5.59 -106.71 -0.60 0.69 16 10 C 0.01 0.32 10.96 -16.72 -0.18 0.13 16 11 N -0.49 -11.81 10.33 -12.57 -0.13 -11.94 16 12 C 0.17 3.89 8.30 -16.71 -0.14 3.75 16 13 F -0.14 -3.24 15.90 2.25 0.04 -3.21 16 14 C -0.11 -2.47 5.48 -104.76 -0.57 -3.05 16 15 C 0.02 0.42 5.33 -104.83 -0.56 -0.14 16 16 C -0.11 -2.00 8.84 -39.32 -0.35 -2.35 16 17 C -0.06 -0.90 9.58 -39.24 -0.38 -1.27 16 18 C -0.16 -2.36 5.88 -104.92 -0.62 -2.98 16 19 C 0.57 7.96 8.04 -12.39 -0.10 7.86 16 20 N -0.85 -7.79 8.82 30.50 0.27 -7.52 16 21 O -0.55 -9.61 17.17 5.30 0.09 -9.52 16 22 C -0.08 -1.13 9.52 -39.24 -0.37 -1.51 16 23 C -0.12 -1.88 9.51 -39.32 -0.37 -2.25 16 24 C -0.09 -2.16 8.28 -38.24 -0.32 -2.48 16 25 H 0.29 5.96 8.30 -40.82 -0.34 5.63 16 26 H 0.14 2.90 8.06 -52.49 -0.42 2.48 16 27 H 0.13 2.30 7.78 -52.49 -0.41 1.89 16 28 H 0.13 2.03 7.64 -52.48 -0.40 1.63 16 29 H 0.40 2.60 6.85 -40.82 -0.28 2.32 16 30 H 0.40 2.96 8.93 -40.82 -0.36 2.60 16 31 H 0.12 1.12 6.39 -52.49 -0.34 0.79 16 32 H 0.13 1.96 8.04 -52.49 -0.42 1.54 16 33 H 0.14 3.25 6.20 -52.49 -0.33 2.93 16 LS Contribution 299.71 15.07 4.52 4.52 Total: -1.00 -28.59 299.71 -7.14 -35.73 By element: Atomic # 1 Polarization: 12.94 SS G_CDS: -2.51 Total: 10.43 kcal Atomic # 6 Polarization: -7.55 SS G_CDS: -4.99 Total: -12.53 kcal Atomic # 7 Polarization: -37.44 SS G_CDS: 0.75 Total: -36.70 kcal Atomic # 8 Polarization: -9.61 SS G_CDS: 0.09 Total: -9.52 kcal Atomic # 9 Polarization: -3.24 SS G_CDS: 0.04 Total: -3.21 kcal Atomic # 14 Polarization: 16.31 SS G_CDS: -5.03 Total: 11.28 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -28.59 -7.14 -35.73 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239873616.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.479 kcal (2) G-P(sol) polarization free energy of solvation -28.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds