Wall clock time and date at job start Tue Mar 31 2020 05:43:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30861 * 1 3 3 Si 1.86790 * 120.00226 * 2 1 4 4 H 1.48502 * 109.47156 * 269.99835 * 3 2 1 5 5 H 1.48501 * 109.47403 * 30.00097 * 3 2 1 6 6 H 1.48505 * 109.47108 * 149.99882 * 3 2 1 7 7 C 1.39900 * 119.99599 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99897 * 163.04642 * 7 2 1 9 9 C 1.41382 * 120.00133 * 343.04863 * 7 2 1 10 10 C 1.40815 * 120.56970 * 155.71143 * 9 7 2 11 11 N 1.31504 * 120.71220 * 179.97438 * 10 9 7 12 12 C 1.32157 * 122.08726 * 359.97438 * 11 10 9 13 13 F 1.35107 * 119.46085 * 180.02562 * 12 11 10 14 14 C 1.40116 * 121.07407 * 359.97438 * 12 11 10 15 15 C 1.48251 * 120.42897 * 180.02562 * 14 12 11 16 16 C 1.39520 * 119.97472 * 310.00323 * 15 14 12 17 17 C 1.37652 * 120.02235 * 180.02562 * 16 15 14 18 18 C 1.39719 * 119.97966 * 359.97438 * 17 16 15 19 19 C 1.47701 * 120.02573 * 180.02562 * 18 17 16 20 20 N 1.34777 * 119.99937 * 179.97438 * 19 18 17 21 21 O 1.21573 * 120.00028 * 359.97438 * 19 18 17 22 22 C 1.39724 * 119.94815 * 0.27168 * 18 17 16 23 23 C 1.37658 * 119.97571 * 359.44831 * 22 18 17 24 24 C 1.39097 * 119.14361 * 0.27690 * 14 12 11 25 25 H 0.97006 * 119.99565 * 0.02562 * 1 2 3 26 26 H 1.07994 * 119.64213 * 359.97438 * 10 9 7 27 27 H 1.07998 * 119.99196 * 359.97438 * 16 15 14 28 28 H 1.08005 * 120.00876 * 179.97438 * 17 16 15 29 29 H 0.97006 * 119.99971 * 0.02562 * 20 19 18 30 30 H 0.96997 * 120.00354 * 179.72351 * 20 19 18 31 31 H 1.07996 * 120.00814 * 179.72894 * 22 18 17 32 32 H 1.07993 * 119.98535 * 180.29695 * 23 22 18 33 33 H 1.08000 * 120.94156 * 179.71123 * 24 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2426 1.6176 0.0000 4 1 2.4902 2.0463 -1.4001 5 1 1.4402 2.6526 0.7001 6 1 3.5402 1.4400 0.7001 7 6 2.0080 -1.2116 0.0005 8 1 3.0528 -1.2321 -0.2722 9 6 1.3471 -2.4092 0.3581 10 6 1.8227 -3.6535 -0.0987 11 7 1.2104 -4.7692 0.2325 12 6 0.1344 -4.7784 0.9997 13 9 -0.4522 -5.9559 1.3075 14 6 -0.4073 -3.5870 1.5001 15 6 -1.6146 -3.6140 2.3600 16 6 -2.7421 -4.3297 1.9562 17 6 -3.8639 -4.3551 2.7537 18 6 -3.8729 -3.6641 3.9681 19 6 -5.0758 -3.6911 4.8248 20 7 -5.0837 -3.0248 5.9963 21 8 -6.0586 -4.3142 4.4732 22 6 -2.7450 -2.9435 4.3690 23 6 -1.6223 -2.9242 3.5727 24 6 0.1992 -2.3781 1.1752 25 1 -0.4850 0.8401 -0.0004 26 1 2.6996 -3.6918 -0.7278 27 1 -2.7352 -4.8634 1.0174 28 1 -4.7367 -4.9088 2.4407 29 1 -4.2996 -2.5273 6.2767 30 1 -5.8750 -3.0392 6.5571 31 1 -2.7525 -2.4055 5.3054 32 1 -0.7487 -2.3712 3.8847 33 1 -0.1966 -1.4422 1.5410 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239873616.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:45 Heat of formation + Delta-G solvation = -58.461158 kcal Electronic energy + Delta-G solvation = -21095.310075 eV Core-core repulsion = 17612.667268 eV Total energy + Delta-G solvation = -3482.642807 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 286.086 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -49.44430 -41.17281 -40.26949 -39.02793 -36.02378 -35.00469 -33.94638 -32.25075 -31.94528 -30.25844 -27.40332 -25.59652 -24.16926 -23.18561 -22.92680 -21.44126 -19.48033 -19.07211 -18.50968 -17.96612 -17.62235 -17.20302 -16.58814 -16.40582 -16.12770 -15.83338 -15.51115 -15.17510 -14.76176 -14.43421 -14.32168 -14.13965 -13.89651 -13.65555 -13.52317 -13.25578 -12.98421 -12.79925 -12.31525 -12.11855 -11.85354 -11.24573 -11.22684 -10.77945 -10.63282 -10.33099 -10.03134 -9.82862 -9.26662 -8.79429 -6.51201 -0.41888 0.37563 0.53892 0.81150 1.44004 1.49569 1.59400 1.81598 2.18147 2.51466 2.55173 2.83599 3.24235 3.45127 3.62996 3.82568 3.88680 4.00368 4.20798 4.34180 4.46046 4.62659 4.70669 4.85277 5.00008 5.00660 5.12601 5.20418 5.30770 5.47528 5.61046 5.71090 5.80227 5.87833 5.90764 6.34555 6.39223 6.59221 6.63585 7.26848 7.31049 8.14872 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.016891 B = 0.004823 C = 0.003933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1657.257340 B = 5804.667709 C = 7118.379642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.808 5.808 2 C 0.039 3.961 3 Si 0.989 3.011 4 H -0.263 1.263 5 H -0.265 1.265 6 H -0.253 1.253 7 C -0.457 4.457 8 H 0.098 0.902 9 C 0.035 3.965 10 C -0.003 4.003 11 N -0.504 5.504 12 C 0.135 3.865 13 F -0.144 7.144 14 C -0.100 4.100 15 C -0.011 4.011 16 C -0.123 4.123 17 C -0.063 4.063 18 C -0.157 4.157 19 C 0.569 3.431 20 N -0.826 5.826 21 O -0.588 6.588 22 C -0.064 4.064 23 C -0.119 4.119 24 C -0.110 4.110 25 H 0.297 0.703 26 H 0.156 0.844 27 H 0.117 0.883 28 H 0.136 0.864 29 H 0.418 0.582 30 H 0.415 0.585 31 H 0.174 0.826 32 H 0.140 0.860 33 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.013 4.282 10.544 12.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.432 5.432 2 C -0.180 4.180 3 Si 0.809 3.191 4 H -0.188 1.188 5 H -0.190 1.190 6 H -0.176 1.176 7 C -0.485 4.485 8 H 0.116 0.884 9 C 0.030 3.970 10 C -0.164 4.164 11 N -0.216 5.216 12 C -0.018 4.018 13 F -0.124 7.124 14 C -0.103 4.103 15 C -0.012 4.012 16 C -0.141 4.141 17 C -0.082 4.082 18 C -0.160 4.160 19 C 0.355 3.645 20 N -0.390 5.390 21 O -0.470 6.470 22 C -0.082 4.082 23 C -0.137 4.137 24 C -0.135 4.135 25 H 0.109 0.891 26 H 0.173 0.827 27 H 0.135 0.865 28 H 0.154 0.846 29 H 0.250 0.750 30 H 0.247 0.753 31 H 0.192 0.808 32 H 0.158 0.842 33 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -4.481 3.162 9.916 11.331 hybrid contribution -0.014 0.987 0.057 0.989 sum -4.495 4.149 9.972 11.699 Atomic orbital electron populations 1.69813 1.09229 1.31776 1.32337 1.26879 0.95472 1.04884 0.90719 0.85071 0.79232 0.75128 0.79683 1.18790 1.18976 1.17649 1.19934 0.98756 0.91026 1.38778 0.88364 1.18814 0.92782 0.94522 0.90837 1.22608 1.02784 0.86362 1.04691 1.66250 1.08186 1.34402 1.12721 1.17765 0.96558 0.80302 1.07162 1.91394 1.82556 1.46526 1.91957 1.19358 0.97093 0.92765 1.01116 1.19085 0.92029 0.95875 0.94246 1.21156 0.92741 0.99788 1.00386 1.21179 0.97492 0.96639 0.92868 1.19981 0.95351 1.03737 0.96904 1.18212 0.86344 0.78023 0.81895 1.43516 1.21606 1.53030 1.20897 1.90786 1.36798 1.45233 1.74155 1.21489 0.90403 0.96248 1.00073 1.21343 0.99813 0.99377 0.93154 1.21754 0.97541 0.95550 0.98656 0.89133 0.82686 0.86485 0.84627 0.74968 0.75264 0.80849 0.84202 0.84426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -36.47 10.92 21.82 0.24 -36.23 16 2 C 0.04 1.66 5.18 85.24 0.44 2.10 16 3 Si 0.99 32.05 29.59 68.60 2.03 34.08 16 4 H -0.26 -8.40 7.11 99.48 0.71 -7.69 16 5 H -0.27 -8.22 7.11 99.48 0.71 -7.51 16 6 H -0.25 -7.99 7.11 99.48 0.71 -7.29 16 7 C -0.46 -21.03 9.08 23.45 0.21 -20.82 16 8 H 0.10 4.20 7.90 -2.91 -0.02 4.18 16 9 C 0.04 1.72 5.59 -21.21 -0.12 1.60 16 10 C 0.00 -0.13 10.96 85.37 0.94 0.80 16 11 N -0.50 -25.23 10.33 -193.68 -2.00 -27.23 16 12 C 0.14 6.60 8.30 85.10 0.71 7.31 16 13 F -0.14 -6.79 15.90 44.97 0.71 -6.07 16 14 C -0.10 -4.53 5.48 -19.95 -0.11 -4.64 16 15 C -0.01 -0.44 5.33 -20.00 -0.11 -0.54 16 16 C -0.12 -4.47 8.84 22.44 0.20 -4.27 16 17 C -0.06 -2.02 9.58 22.49 0.22 -1.80 16 18 C -0.16 -4.28 5.88 -20.06 -0.12 -4.40 16 19 C 0.57 14.41 8.04 86.74 0.70 15.11 16 20 N -0.83 -11.69 8.82 -175.70 -1.55 -13.24 16 21 O -0.59 -19.79 17.17 -3.94 -0.07 -19.86 16 22 C -0.06 -1.49 9.52 22.49 0.21 -1.28 16 23 C -0.12 -3.64 9.51 22.44 0.21 -3.42 16 24 C -0.11 -5.20 8.28 23.14 0.19 -5.01 16 25 H 0.30 12.03 8.30 -92.70 -0.77 11.26 16 26 H 0.16 6.63 8.06 -2.91 -0.02 6.60 16 27 H 0.12 4.42 7.78 -2.91 -0.02 4.40 16 28 H 0.14 4.20 7.64 -2.91 -0.02 4.18 16 29 H 0.42 3.23 6.85 -92.70 -0.63 2.60 16 30 H 0.41 4.49 8.93 -92.71 -0.83 3.66 16 31 H 0.17 2.18 6.39 -2.91 -0.02 2.17 16 32 H 0.14 3.97 8.04 -2.91 -0.02 3.94 16 33 H 0.14 6.48 6.20 -2.91 -0.02 6.47 16 Total: -1.00 -63.53 299.71 2.68 -60.85 By element: Atomic # 1 Polarization: 27.22 SS G_CDS: -0.26 Total: 26.96 kcal Atomic # 6 Polarization: -22.84 SS G_CDS: 3.57 Total: -19.26 kcal Atomic # 7 Polarization: -73.38 SS G_CDS: -3.31 Total: -76.70 kcal Atomic # 8 Polarization: -19.79 SS G_CDS: -0.07 Total: -19.86 kcal Atomic # 9 Polarization: -6.79 SS G_CDS: 0.71 Total: -6.07 kcal Atomic # 14 Polarization: 32.05 SS G_CDS: 2.03 Total: 34.08 kcal Total: -63.53 2.68 -60.85 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239873616.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.389 kcal (2) G-P(sol) polarization free energy of solvation -63.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds