Wall clock time and date at job start Tue Mar 31 2020 06:24:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.21287 * 120.00206 * 2 1 4 4 C 1.46898 * 119.99651 * 180.02562 * 2 1 3 5 5 C 1.40089 * 120.04729 * 356.15477 * 4 2 1 6 6 C 1.36439 * 120.13155 * 180.25077 * 5 4 2 7 7 C 1.39922 * 120.22299 * 359.45848 * 6 5 4 8 8 C 1.47740 * 119.95308 * 180.25255 * 7 6 5 9 9 N 1.32892 * 120.24881 * 135.29726 * 8 7 6 10 10 C 1.31939 * 120.08455 * 179.69944 * 9 8 7 11 11 C 1.39287 * 120.58356 * 0.59697 * 10 9 8 12 12 N 1.31565 * 120.50237 * 359.67897 * 11 10 9 13 13 C 1.33995 * 119.89762 * 0.02562 * 12 11 10 14 14 C 1.40783 * 120.28316 * 180.02562 * 13 12 11 15 15 H 1.08003 * 119.99926 * 164.52969 * 14 13 12 16 16 C 1.40248 * 120.00363 * 344.52955 * 14 13 12 17 17 N 1.30636 * 119.99808 * 167.40341 * 16 14 13 18 18 Si 1.86800 * 119.99796 * 347.40653 * 16 14 13 19 19 H 1.48498 * 109.46967 * 84.73821 * 18 16 14 20 20 H 1.48500 * 109.46902 * 204.73914 * 18 16 14 21 21 H 1.48501 * 109.46916 * 324.73922 * 18 16 14 22 22 C 1.39707 * 120.08913 * 0.54136 * 7 6 5 23 23 C 1.37953 * 119.86704 * 359.73248 * 22 7 6 24 24 F 1.35104 * 120.11418 * 179.97438 * 23 22 7 25 25 H 1.08997 * 109.47311 * 185.29089 * 1 2 3 26 26 H 1.09007 * 109.47002 * 305.28641 * 1 2 3 27 27 H 1.09000 * 109.47587 * 65.28764 * 1 2 3 28 28 H 1.08000 * 119.93535 * 359.97438 * 5 4 2 29 29 H 1.07999 * 119.88439 * 179.72429 * 6 5 4 30 30 H 1.07996 * 119.71300 * 180.29791 * 10 9 8 31 31 H 1.08002 * 119.75024 * 179.70149 * 11 10 9 32 32 H 0.97001 * 119.99980 * 179.97438 * 17 16 14 33 33 H 1.08005 * 120.06416 * 179.71477 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 6 2.2414 -1.2722 -0.0006 5 6 1.5442 -2.4846 0.0802 6 6 2.2249 -3.6671 0.0850 7 6 3.6214 -3.6763 -0.0021 8 6 4.3521 -4.9603 -0.0021 9 7 5.3401 -5.1684 -0.8661 10 6 5.9943 -6.3141 -0.8593 11 6 5.6518 -7.3204 0.0407 12 7 4.6741 -7.1412 0.9025 13 6 4.0003 -5.9830 0.9168 14 6 2.9529 -5.7823 1.8359 15 1 2.5805 -4.7856 2.0209 16 6 2.3931 -6.8766 2.5112 17 7 1.6031 -6.6791 3.5327 18 14 2.7774 -8.6164 1.9501 19 1 4.0529 -9.0643 2.5646 20 1 1.6802 -9.5252 2.3689 21 1 2.9045 -8.6426 0.4708 22 6 4.3260 -2.4726 -0.0831 23 6 3.6419 -1.2747 -0.0825 24 9 4.3183 -0.1077 -0.1600 25 1 -0.3634 -1.0232 0.0948 26 1 -0.3633 0.5937 0.8389 27 1 -0.3634 0.4296 -0.9335 28 1 0.4661 -2.4832 0.1433 29 1 1.6837 -4.5993 0.1519 30 1 6.7994 -6.4749 -1.5610 31 1 6.1933 -8.2549 0.0313 32 1 1.2156 -7.4360 3.9996 33 1 5.4042 -2.4800 -0.1456 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241254443.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:55 Heat of formation + Delta-G solvation = -29.004352 kcal Electronic energy + Delta-G solvation = -21510.371561 eV Core-core repulsion = 18029.006097 eV Total energy + Delta-G solvation = -3481.365464 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 286.086 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -48.52510 -39.89177 -39.24948 -37.70061 -34.44677 -33.22662 -32.23734 -30.99634 -29.88939 -28.80609 -26.52657 -24.58548 -22.53665 -21.98376 -21.56465 -19.76278 -18.15360 -17.42973 -16.61760 -16.25551 -15.95053 -15.49049 -15.39623 -15.03636 -14.53670 -14.40088 -14.24521 -13.94583 -13.58236 -13.12290 -12.99434 -12.60750 -12.21063 -12.06471 -11.98459 -11.86451 -11.73283 -11.38772 -11.20776 -10.89505 -10.68982 -10.06512 -9.72482 -9.52443 -9.51068 -8.91340 -8.43121 -8.07181 -7.77134 -7.33725 -5.12703 0.71938 1.63445 1.94694 2.33855 2.71834 3.15992 3.22225 3.28568 3.98160 4.02420 4.16582 4.22479 4.49888 4.91215 4.96511 5.12030 5.16055 5.41495 5.44719 5.48393 5.53225 5.65901 5.76977 5.83686 5.93522 6.09525 6.25679 6.34290 6.43859 6.45604 6.60987 6.72764 6.96955 7.18139 7.24397 7.66493 7.68429 7.95596 8.05328 8.63640 9.09082 9.53229 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.019616 B = 0.005557 C = 0.004548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1427.086425 B = 5037.344913 C = 6154.714561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.396 3.604 3 O -0.463 6.463 4 C -0.234 4.234 5 C -0.050 4.050 6 C -0.123 4.123 7 C 0.091 3.909 8 C -0.028 4.028 9 N -0.394 5.394 10 C -0.111 4.111 11 C 0.119 3.881 12 N -0.534 5.534 13 C 0.205 3.795 14 C -0.376 4.376 15 H 0.115 0.885 16 C 0.080 3.920 17 N -0.766 5.766 18 Si 0.990 3.010 19 H -0.267 1.267 20 H -0.318 1.318 21 H -0.267 1.267 22 C -0.162 4.162 23 C 0.154 3.846 24 F -0.126 7.126 25 H 0.086 0.914 26 H 0.090 0.910 27 H 0.092 0.908 28 H 0.139 0.861 29 H 0.147 0.853 30 H 0.140 0.860 31 H 0.141 0.859 32 H 0.297 0.703 33 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.084 2.454 -4.168 5.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.255 4.255 2 C 0.275 3.725 3 O -0.340 6.340 4 C -0.237 4.237 5 C -0.068 4.068 6 C -0.142 4.142 7 C 0.089 3.911 8 C -0.175 4.175 9 N -0.106 5.106 10 C -0.272 4.272 11 C -0.050 4.050 12 N -0.255 5.255 13 C 0.083 3.917 14 C -0.405 4.405 15 H 0.132 0.868 16 C -0.147 4.147 17 N -0.386 5.386 18 Si 0.822 3.178 19 H -0.192 1.192 20 H -0.249 1.249 21 H -0.192 1.192 22 C -0.181 4.181 23 C 0.134 3.866 24 F -0.105 7.105 25 H 0.104 0.896 26 H 0.109 0.891 27 H 0.110 0.890 28 H 0.157 0.843 29 H 0.164 0.836 30 H 0.157 0.843 31 H 0.158 0.842 32 H 0.108 0.892 33 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -2.945 3.060 -3.918 5.778 hybrid contribution 0.424 -0.747 -0.044 0.860 sum -2.521 2.312 -3.962 5.235 Atomic orbital electron populations 1.22208 0.93870 1.04925 1.04539 1.22271 0.91624 0.87377 0.71203 1.90562 1.72057 1.34254 1.37149 1.20448 0.92348 0.96207 1.14659 1.20951 0.99945 0.90390 0.95527 1.21230 0.93462 0.99063 1.00414 1.18352 0.92179 0.90534 0.90055 1.19828 1.01102 0.95794 1.00733 1.67707 1.02790 1.21055 1.19068 1.22558 1.06082 0.92505 1.06064 1.23309 0.92893 0.98386 0.90450 1.67750 1.10166 1.22976 1.24566 1.19125 0.93076 0.87542 0.92004 1.19833 1.10070 0.97450 1.13177 0.86778 1.26544 0.91498 1.04652 0.92018 1.69558 1.19772 1.36706 1.12549 0.84727 0.76244 0.76385 0.80461 1.19238 1.24888 1.19246 1.21216 1.01043 0.90009 1.05881 1.17769 0.89000 0.81372 0.98413 1.91527 1.79838 1.46237 1.92855 0.89560 0.89104 0.88958 0.84350 0.83568 0.84282 0.84187 0.89192 0.84518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.02 10.18 36.00 0.37 -1.66 16 2 C 0.40 6.02 7.21 -30.81 -0.22 5.80 16 3 O -0.46 -8.61 16.08 5.55 0.09 -8.52 16 4 C -0.23 -3.85 5.88 -104.93 -0.62 -4.46 16 5 C -0.05 -0.75 9.38 -39.54 -0.37 -1.12 16 6 C -0.12 -2.17 7.52 -39.60 -0.30 -2.47 16 7 C 0.09 1.81 5.25 -104.84 -0.55 1.26 16 8 C -0.03 -0.62 6.40 -82.12 -0.53 -1.15 16 9 N -0.39 -8.55 10.31 -8.97 -0.09 -8.65 16 10 C -0.11 -2.17 11.22 -17.12 -0.19 -2.36 16 11 C 0.12 2.35 11.22 -17.28 -0.19 2.16 16 12 N -0.53 -12.26 5.56 -10.71 -0.06 -12.32 16 13 C 0.20 4.80 6.15 -84.55 -0.52 4.28 16 14 C -0.38 -8.86 7.81 -37.87 -0.30 -9.16 16 15 H 0.11 2.69 5.89 -52.48 -0.31 2.38 16 16 C 0.08 1.86 5.52 -17.31 -0.10 1.76 16 17 N -0.77 -17.69 13.92 55.56 0.77 -16.92 16 18 Si 0.99 21.14 25.40 -169.99 -4.32 16.83 16 19 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 20 H -0.32 -6.51 7.11 56.52 0.40 -6.11 16 21 H -0.27 -5.94 6.83 56.52 0.39 -5.55 16 22 C -0.16 -3.07 9.64 -39.14 -0.38 -3.45 16 23 C 0.15 2.84 7.28 -38.91 -0.28 2.56 16 24 F -0.13 -2.43 15.54 2.25 0.04 -2.40 16 25 H 0.09 0.72 5.60 -51.93 -0.29 0.43 16 26 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 27 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 28 H 0.14 1.54 5.91 -52.49 -0.31 1.23 16 29 H 0.15 2.61 6.78 -52.49 -0.36 2.25 16 30 H 0.14 2.25 8.06 -52.49 -0.42 1.83 16 31 H 0.14 2.23 8.06 -52.49 -0.42 1.80 16 32 H 0.30 6.21 8.29 -40.82 -0.34 5.87 16 33 H 0.14 2.56 8.06 -52.48 -0.42 2.14 16 LS Contribution 291.46 15.07 4.39 4.39 Total: -1.00 -28.06 291.46 -5.88 -33.95 By element: Atomic # 1 Polarization: 4.18 SS G_CDS: -2.53 Total: 1.65 kcal Atomic # 6 Polarization: -3.83 SS G_CDS: -4.18 Total: -8.01 kcal Atomic # 7 Polarization: -38.50 SS G_CDS: 0.62 Total: -37.88 kcal Atomic # 8 Polarization: -8.61 SS G_CDS: 0.09 Total: -8.52 kcal Atomic # 9 Polarization: -2.43 SS G_CDS: 0.04 Total: -2.40 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -4.32 Total: 16.83 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -28.06 -5.88 -33.95 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241254443.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.941 kcal (2) G-P(sol) polarization free energy of solvation -28.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds