Wall clock time and date at job start Tue Mar 31 2020 06:24:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.21287 * 120.00206 * 2 1 4 4 C 1.46898 * 119.99651 * 180.02562 * 2 1 3 5 5 C 1.40089 * 120.04729 * 356.15477 * 4 2 1 6 6 C 1.36439 * 120.13155 * 180.25077 * 5 4 2 7 7 C 1.39922 * 120.22299 * 359.45848 * 6 5 4 8 8 C 1.47740 * 119.95308 * 180.25255 * 7 6 5 9 9 N 1.32892 * 120.24881 * 135.29726 * 8 7 6 10 10 C 1.31939 * 120.08455 * 179.69944 * 9 8 7 11 11 C 1.39287 * 120.58356 * 0.59697 * 10 9 8 12 12 N 1.31565 * 120.50237 * 359.67897 * 11 10 9 13 13 C 1.33995 * 119.89762 * 0.02562 * 12 11 10 14 14 C 1.40783 * 120.28316 * 180.02562 * 13 12 11 15 15 H 1.08003 * 119.99926 * 164.52969 * 14 13 12 16 16 C 1.40248 * 120.00363 * 344.52955 * 14 13 12 17 17 N 1.30636 * 119.99808 * 167.40341 * 16 14 13 18 18 Si 1.86800 * 119.99796 * 347.40653 * 16 14 13 19 19 H 1.48498 * 109.46967 * 84.73821 * 18 16 14 20 20 H 1.48500 * 109.46902 * 204.73914 * 18 16 14 21 21 H 1.48501 * 109.46916 * 324.73922 * 18 16 14 22 22 C 1.39707 * 120.08913 * 0.54136 * 7 6 5 23 23 C 1.37953 * 119.86704 * 359.73248 * 22 7 6 24 24 F 1.35104 * 120.11418 * 179.97438 * 23 22 7 25 25 H 1.08997 * 109.47311 * 185.29089 * 1 2 3 26 26 H 1.09007 * 109.47002 * 305.28641 * 1 2 3 27 27 H 1.09000 * 109.47587 * 65.28764 * 1 2 3 28 28 H 1.08000 * 119.93535 * 359.97438 * 5 4 2 29 29 H 1.07999 * 119.88439 * 179.72429 * 6 5 4 30 30 H 1.07996 * 119.71300 * 180.29791 * 10 9 8 31 31 H 1.08002 * 119.75024 * 179.70149 * 11 10 9 32 32 H 0.97001 * 119.99980 * 179.97438 * 17 16 14 33 33 H 1.08005 * 120.06416 * 179.71477 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 6 2.2414 -1.2722 -0.0006 5 6 1.5442 -2.4846 0.0802 6 6 2.2249 -3.6671 0.0850 7 6 3.6214 -3.6763 -0.0021 8 6 4.3521 -4.9603 -0.0021 9 7 5.3401 -5.1684 -0.8661 10 6 5.9943 -6.3141 -0.8593 11 6 5.6518 -7.3204 0.0407 12 7 4.6741 -7.1412 0.9025 13 6 4.0003 -5.9830 0.9168 14 6 2.9529 -5.7823 1.8359 15 1 2.5805 -4.7856 2.0209 16 6 2.3931 -6.8766 2.5112 17 7 1.6031 -6.6791 3.5327 18 14 2.7774 -8.6164 1.9501 19 1 4.0529 -9.0643 2.5646 20 1 1.6802 -9.5252 2.3689 21 1 2.9045 -8.6426 0.4708 22 6 4.3260 -2.4726 -0.0831 23 6 3.6419 -1.2747 -0.0825 24 9 4.3183 -0.1077 -0.1600 25 1 -0.3634 -1.0232 0.0948 26 1 -0.3633 0.5937 0.8389 27 1 -0.3634 0.4296 -0.9335 28 1 0.4661 -2.4832 0.1433 29 1 1.6837 -4.5993 0.1519 30 1 6.7994 -6.4749 -1.5610 31 1 6.1933 -8.2549 0.0313 32 1 1.2156 -7.4360 3.9996 33 1 5.4042 -2.4800 -0.1456 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241254443.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:54 Heat of formation + Delta-G solvation = -45.188810 kcal Electronic energy + Delta-G solvation = -21511.073372 eV Core-core repulsion = 18029.006097 eV Total energy + Delta-G solvation = -3482.067275 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 286.086 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -50.00380 -41.45161 -40.61187 -39.09546 -36.13695 -34.80500 -33.78226 -32.37995 -31.23135 -30.03762 -28.15359 -26.04809 -24.12808 -23.41564 -23.07474 -21.04158 -19.85847 -18.85172 -18.21979 -17.63365 -17.38991 -17.06967 -16.82972 -16.56189 -15.82771 -15.75021 -15.64953 -15.27985 -15.11783 -14.76563 -14.49851 -14.08195 -13.63585 -13.50352 -13.30584 -13.04051 -12.96060 -12.92450 -12.81706 -12.34081 -12.24926 -11.73808 -11.45535 -11.17802 -10.77006 -10.41362 -9.87488 -9.68573 -9.36711 -9.04154 -6.83999 -0.66298 0.21266 0.38638 0.69439 1.38850 1.46104 1.53054 1.59918 2.33135 2.49259 2.65039 2.96575 3.14586 3.43757 3.47033 3.72007 3.92276 4.09324 4.12440 4.15097 4.28380 4.38426 4.54387 4.65890 4.70237 4.79166 4.88808 4.94506 5.01925 5.12759 5.16641 5.29288 5.52545 5.63446 5.79868 5.91897 6.28619 6.35389 6.50817 6.98385 7.43701 7.87315 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.019616 B = 0.005557 C = 0.004548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1427.086425 B = 5037.344913 C = 6154.714561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.396 3.604 3 O -0.503 6.503 4 C -0.232 4.232 5 C -0.027 4.027 6 C -0.126 4.126 7 C 0.066 3.934 8 C -0.041 4.041 9 N -0.414 5.414 10 C -0.102 4.102 11 C 0.111 3.889 12 N -0.558 5.558 13 C 0.193 3.807 14 C -0.400 4.400 15 H 0.105 0.895 16 C 0.061 3.939 17 N -0.790 5.790 18 Si 1.031 2.969 19 H -0.276 1.276 20 H -0.305 1.305 21 H -0.282 1.282 22 C -0.166 4.166 23 C 0.134 3.866 24 F -0.136 7.136 25 H 0.109 0.891 26 H 0.106 0.894 27 H 0.113 0.887 28 H 0.187 0.813 29 H 0.144 0.856 30 H 0.177 0.823 31 H 0.182 0.818 32 H 0.306 0.694 33 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.250 2.138 -4.927 6.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C 0.278 3.722 3 O -0.382 6.382 4 C -0.235 4.235 5 C -0.045 4.045 6 C -0.145 4.145 7 C 0.065 3.935 8 C -0.185 4.185 9 N -0.127 5.127 10 C -0.263 4.263 11 C -0.056 4.056 12 N -0.279 5.279 13 C 0.070 3.930 14 C -0.430 4.430 15 H 0.122 0.878 16 C -0.164 4.164 17 N -0.412 5.412 18 Si 0.862 3.138 19 H -0.202 1.202 20 H -0.236 1.236 21 H -0.208 1.208 22 C -0.186 4.186 23 C 0.114 3.886 24 F -0.115 7.115 25 H 0.128 0.872 26 H 0.124 0.876 27 H 0.131 0.869 28 H 0.204 0.796 29 H 0.161 0.839 30 H 0.194 0.806 31 H 0.199 0.801 32 H 0.117 0.883 33 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -4.123 2.743 -4.676 6.811 hybrid contribution 0.917 -0.602 0.065 1.099 sum -3.207 2.141 -4.611 6.010 Atomic orbital electron populations 1.22258 0.89123 1.07003 1.06219 1.22967 0.93958 0.85862 0.69449 1.90559 1.73386 1.35258 1.38984 1.20881 0.91634 0.97876 1.13069 1.21364 1.02004 0.88480 0.92616 1.21313 0.92665 1.00100 1.00435 1.18438 0.93244 0.89893 0.91964 1.20118 1.01426 0.96504 1.00501 1.67804 1.03297 1.22200 1.19367 1.23274 1.05758 0.91513 1.05747 1.23991 0.92109 1.00058 0.89491 1.67748 1.11221 1.23044 1.25893 1.19304 0.93224 0.88229 0.92204 1.19765 1.11347 0.97285 1.14626 0.87768 1.26889 0.91471 1.05994 0.92037 1.69541 1.20811 1.37612 1.13200 0.84144 0.75880 0.74805 0.78932 1.20240 1.23589 1.20831 1.21115 1.00759 0.90283 1.06477 1.18007 0.90158 0.80816 0.99608 1.91497 1.80230 1.46617 1.93115 0.87236 0.87586 0.86865 0.79632 0.83860 0.80590 0.80138 0.88285 0.85334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.06 10.18 71.23 0.73 -2.33 16 2 C 0.40 11.18 7.21 27.95 0.20 11.39 16 3 O -0.50 -18.23 16.08 -3.05 -0.05 -18.28 16 4 C -0.23 -7.29 5.88 -20.06 -0.12 -7.41 16 5 C -0.03 -0.75 9.38 22.30 0.21 -0.54 16 6 C -0.13 -4.38 7.52 22.26 0.17 -4.21 16 7 C 0.07 2.68 5.25 -20.00 -0.11 2.57 16 8 C -0.04 -1.82 6.40 42.41 0.27 -1.55 16 9 N -0.41 -17.77 10.31 -182.31 -1.88 -19.65 16 10 C -0.10 -3.78 11.22 84.93 0.95 -2.82 16 11 C 0.11 4.19 11.22 84.99 0.95 5.14 16 12 N -0.56 -25.26 5.56 -187.80 -1.04 -26.30 16 13 C 0.19 9.12 6.15 40.35 0.25 9.37 16 14 C -0.40 -19.15 7.81 23.38 0.18 -18.96 16 15 H 0.10 5.04 5.89 -2.91 -0.02 5.02 16 16 C 0.06 2.83 5.52 85.36 0.47 3.30 16 17 N -0.79 -36.52 13.92 21.88 0.30 -36.21 16 18 Si 1.03 43.13 25.40 68.60 1.74 44.87 16 19 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 20 H -0.31 -11.93 7.11 99.48 0.71 -11.23 16 21 H -0.28 -12.33 6.83 99.48 0.68 -11.65 16 22 C -0.17 -6.49 9.64 22.56 0.22 -6.27 16 23 C 0.13 4.97 7.28 22.70 0.17 5.13 16 24 F -0.14 -5.37 15.54 44.97 0.70 -4.67 16 25 H 0.11 1.24 5.60 -2.39 -0.01 1.23 16 26 H 0.11 1.50 8.14 -2.38 -0.02 1.48 16 27 H 0.11 1.46 8.14 -2.39 -0.02 1.44 16 28 H 0.19 3.26 5.91 -2.91 -0.02 3.24 16 29 H 0.14 5.08 6.78 -2.91 -0.02 5.06 16 30 H 0.18 5.10 8.06 -2.91 -0.02 5.07 16 31 H 0.18 5.15 8.06 -2.91 -0.02 5.13 16 32 H 0.31 12.69 8.29 -92.71 -0.77 11.92 16 33 H 0.13 5.05 8.06 -2.91 -0.02 5.03 16 Total: -1.00 -62.27 291.46 5.47 -56.81 By element: Atomic # 1 Polarization: 9.48 SS G_CDS: 1.15 Total: 10.63 kcal Atomic # 6 Polarization: -11.73 SS G_CDS: 4.54 Total: -7.19 kcal Atomic # 7 Polarization: -79.55 SS G_CDS: -2.62 Total: -82.17 kcal Atomic # 8 Polarization: -18.23 SS G_CDS: -0.05 Total: -18.28 kcal Atomic # 9 Polarization: -5.37 SS G_CDS: 0.70 Total: -4.67 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 1.74 Total: 44.87 kcal Total: -62.27 5.47 -56.81 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241254443.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.617 kcal (2) G-P(sol) polarization free energy of solvation -62.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds