Wall clock time and date at job start Tue Mar 31 2020 06:24:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 O 1.21260 * 119.99731 * 2 1 4 4 C 1.47050 * 120.00025 * 180.02562 * 2 1 3 5 5 C 1.40124 * 120.06420 * 0.02562 * 4 2 1 6 6 C 1.37835 * 120.17391 * 180.02562 * 5 4 2 7 7 C 1.38474 * 120.31482 * 359.97438 * 6 5 4 8 8 F 1.35097 * 119.93767 * 180.02562 * 7 6 5 9 9 C 1.40132 * 120.12641 * 0.02562 * 7 6 5 10 10 C 1.47743 * 120.08985 * 179.97438 * 9 7 6 11 11 N 1.32878 * 120.24904 * 308.51363 * 10 9 7 12 12 C 1.32011 * 120.07829 * 179.97438 * 11 10 9 13 13 C 1.39194 * 120.58666 * 359.97438 * 12 11 10 14 14 N 1.31607 * 120.51275 * 0.02562 * 13 12 11 15 15 C 1.33970 * 119.89901 * 359.97438 * 14 13 12 16 16 C 1.40785 * 120.28345 * 180.02562 * 15 14 13 17 17 H 1.08003 * 119.99785 * 170.76321 * 16 15 14 18 18 C 1.40163 * 119.99980 * 350.76688 * 16 15 14 19 19 N 1.30691 * 120.00405 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99688 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47144 * 60.00199 * 20 18 16 22 22 H 1.48505 * 109.47129 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.47135 * 299.99991 * 20 18 16 24 24 C 1.39321 * 119.82136 * 0.25013 * 9 7 6 25 25 H 1.08998 * 109.47087 * 239.99372 * 1 2 3 26 26 H 1.08994 * 109.47083 * 0.02562 * 1 2 3 27 27 H 1.09001 * 109.46985 * 120.00024 * 1 2 3 28 28 H 1.07999 * 119.91075 * 359.97019 * 5 4 2 29 29 H 1.07996 * 119.84181 * 179.97438 * 6 5 4 30 30 H 1.07995 * 119.70781 * 179.97438 * 12 11 10 31 31 H 1.08004 * 119.73939 * 179.72386 * 13 12 11 32 32 H 0.96993 * 119.99852 * 180.02562 * 19 18 16 33 33 H 1.08009 * 120.15546 * 179.72700 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1133 1.0502 0.0000 4 6 2.2423 -1.2735 -0.0006 5 6 1.5431 -2.4878 -0.0017 6 6 2.2300 -3.6828 -0.0017 7 6 3.6147 -3.6930 -0.0011 8 9 4.2802 -4.8687 -0.0017 9 6 4.3270 -2.4862 0.0000 10 6 5.8044 -2.4981 0.0011 11 7 6.4673 -3.2187 0.8995 12 6 7.7874 -3.2272 0.8971 13 6 8.4988 -2.4859 -0.0420 14 7 7.8658 -1.7641 -0.9422 15 6 6.5264 -1.7409 -0.9580 16 6 5.8410 -0.9720 -1.9178 17 1 4.7707 -1.0705 -2.0245 18 6 6.5475 -0.0788 -2.7348 19 7 7.8426 0.0400 -2.6061 20 14 5.6381 0.9409 -4.0087 21 1 4.6299 1.7951 -3.3311 22 1 6.6056 1.7997 -4.7379 23 1 4.9559 0.0379 -4.9702 24 6 3.6382 -1.2752 0.0058 25 1 -0.3633 -0.5139 0.8899 26 1 -0.3633 1.0276 -0.0005 27 1 -0.3633 -0.5138 -0.8900 28 1 0.4631 -2.4873 -0.0016 29 1 1.6856 -4.6155 -0.0021 30 1 8.3201 -3.8146 1.6302 31 1 9.5786 -2.4993 -0.0286 32 1 8.3314 0.6584 -3.1713 33 1 4.1818 -0.3419 0.0111 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241298407.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:39 Heat of formation + Delta-G solvation = -20.613650 kcal Electronic energy + Delta-G solvation = -21812.073781 eV Core-core repulsion = 18331.072165 eV Total energy + Delta-G solvation = -3481.001616 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 286.086 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -48.31733 -39.72384 -38.96936 -37.46568 -34.23549 -32.84155 -31.66604 -31.03322 -29.62472 -28.52416 -26.23687 -23.79399 -22.93444 -22.17397 -21.37875 -19.30438 -17.77758 -17.26755 -16.38981 -16.29494 -15.86978 -15.13721 -14.93235 -14.87777 -14.70842 -14.44756 -14.20531 -13.60695 -13.13811 -12.85377 -12.65824 -12.53097 -12.34287 -12.24372 -11.78044 -11.68786 -11.58638 -11.40054 -10.92958 -10.62646 -10.39488 -9.94410 -9.66327 -9.59380 -9.28273 -8.67346 -8.41821 -7.77140 -7.49537 -6.68469 -4.83567 0.88107 1.51894 2.33798 2.62477 2.91450 2.96363 2.99610 3.13273 3.76274 4.02719 4.21433 4.50610 4.63986 4.95305 5.12234 5.15392 5.36840 5.38105 5.40570 5.56815 5.71537 5.82205 5.90740 6.08933 6.19630 6.28173 6.29123 6.46803 6.56505 6.71888 6.79960 6.87997 7.01774 7.23802 7.52544 7.73037 7.88224 8.23125 8.49561 9.08623 9.67820 9.95637 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.011745 B = 0.008505 C = 0.005570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2383.438049 B = 3291.565494 C = 5025.324984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.395 3.605 3 O -0.456 6.456 4 C -0.194 4.194 5 C -0.065 4.065 6 C -0.174 4.174 7 C 0.135 3.865 8 F -0.128 7.128 9 C -0.012 4.012 10 C -0.045 4.045 11 N -0.402 5.402 12 C -0.115 4.115 13 C 0.093 3.907 14 N -0.451 5.451 15 C 0.225 3.775 16 C -0.398 4.398 17 H 0.094 0.906 18 C 0.067 3.933 19 N -0.702 5.702 20 Si 0.907 3.093 21 H -0.255 1.255 22 H -0.273 1.273 23 H -0.260 1.260 24 C -0.013 4.013 25 H 0.091 0.909 26 H 0.081 0.919 27 H 0.092 0.908 28 H 0.134 0.866 29 H 0.134 0.866 30 H 0.130 0.870 31 H 0.133 0.867 32 H 0.282 0.718 33 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.219 -1.719 1.411 11.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.255 4.255 2 C 0.273 3.727 3 O -0.332 6.332 4 C -0.196 4.196 5 C -0.083 4.083 6 C -0.192 4.192 7 C 0.115 3.885 8 F -0.106 7.106 9 C -0.015 4.015 10 C -0.191 4.191 11 N -0.114 5.114 12 C -0.277 4.277 13 C -0.079 4.079 14 N -0.167 5.167 15 C 0.101 3.899 16 C -0.428 4.428 17 H 0.112 0.888 18 C -0.162 4.162 19 N -0.321 5.321 20 Si 0.730 3.270 21 H -0.179 1.179 22 H -0.197 1.197 23 H -0.184 1.184 24 C -0.032 4.032 25 H 0.110 0.890 26 H 0.100 0.900 27 H 0.110 0.890 28 H 0.151 0.849 29 H 0.152 0.848 30 H 0.148 0.852 31 H 0.150 0.850 32 H 0.093 0.907 33 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -10.655 -1.058 1.290 10.785 hybrid contribution -0.012 -0.050 -0.513 0.516 sum -10.668 -1.108 0.776 10.753 Atomic orbital electron populations 1.22233 0.94145 1.04761 1.04330 1.22389 0.91376 0.87709 0.71218 1.90564 1.72137 1.34225 1.36263 1.20358 0.94312 0.94662 1.10235 1.21066 0.99499 0.90549 0.97215 1.20871 0.91984 0.99437 1.06948 1.18205 0.89643 0.81231 0.99462 1.91493 1.81167 1.44908 1.93061 1.18382 0.92310 0.90922 0.99836 1.19794 0.90904 1.07652 1.00733 1.67684 1.09296 1.14102 1.20364 1.22568 0.90357 1.09422 1.05400 1.23580 1.00129 0.92374 0.91805 1.69541 1.07865 1.18195 1.21101 1.19160 0.88845 0.90536 0.91367 1.19726 0.95747 1.15278 1.12048 0.88779 1.26191 0.94927 0.97178 0.97859 1.70014 1.07469 1.24812 1.29807 0.86333 0.80414 0.80014 0.80251 1.17948 1.19718 1.18418 1.21564 0.92208 0.98375 0.91045 0.89015 0.90015 0.88966 0.84866 0.84796 0.85211 0.84971 0.90686 0.83472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.85 8.92 36.01 0.32 -1.52 16 2 C 0.39 5.86 7.22 -30.73 -0.22 5.64 16 3 O -0.46 -8.61 17.06 5.57 0.10 -8.52 16 4 C -0.19 -3.12 5.86 -105.11 -0.62 -3.74 16 5 C -0.06 -0.84 9.46 -39.02 -0.37 -1.21 16 6 C -0.17 -2.56 9.99 -39.64 -0.40 -2.95 16 7 C 0.14 2.62 7.27 -38.78 -0.28 2.34 16 8 F -0.13 -2.67 16.52 2.25 0.04 -2.63 16 9 C -0.01 -0.26 5.04 -104.90 -0.53 -0.79 16 10 C -0.04 -1.13 6.07 -82.11 -0.50 -1.63 16 11 N -0.40 -10.05 10.04 -8.98 -0.09 -10.14 16 12 C -0.12 -2.66 11.22 -17.12 -0.19 -2.85 16 13 C 0.09 2.20 11.22 -17.29 -0.19 2.00 16 14 N -0.45 -12.12 8.10 -10.72 -0.09 -12.21 16 15 C 0.23 6.03 6.52 -84.55 -0.55 5.48 16 16 C -0.40 -10.20 7.81 -37.90 -0.30 -10.49 16 17 H 0.09 2.28 5.75 -52.48 -0.30 1.98 16 18 C 0.07 1.63 5.49 -17.31 -0.10 1.53 16 19 N -0.70 -17.82 11.53 55.56 0.64 -17.18 16 20 Si 0.91 18.12 29.56 -169.99 -5.03 13.09 16 21 H -0.26 -5.15 7.11 56.52 0.40 -4.75 16 22 H -0.27 -5.24 7.11 56.52 0.40 -4.84 16 23 H -0.26 -5.09 7.11 56.52 0.40 -4.69 16 24 C -0.01 -0.25 7.23 -38.67 -0.28 -0.53 16 25 H 0.09 0.66 8.08 -51.93 -0.42 0.24 16 26 H 0.08 0.74 8.12 -51.93 -0.42 0.32 16 27 H 0.09 0.68 8.08 -51.93 -0.42 0.26 16 28 H 0.13 1.15 7.02 -52.49 -0.37 0.78 16 29 H 0.13 1.56 8.06 -52.49 -0.42 1.13 16 30 H 0.13 2.55 8.06 -52.49 -0.42 2.13 16 31 H 0.13 2.64 8.06 -52.48 -0.42 2.21 16 32 H 0.28 6.45 8.29 -40.82 -0.34 6.11 16 33 H 0.15 3.23 7.02 -52.48 -0.37 2.86 16 LS Contribution 300.02 15.07 4.52 4.52 Total: -1.00 -31.23 300.02 -6.81 -38.04 By element: Atomic # 1 Polarization: 6.45 SS G_CDS: -2.70 Total: 3.75 kcal Atomic # 6 Polarization: -4.53 SS G_CDS: -4.20 Total: -8.73 kcal Atomic # 7 Polarization: -39.98 SS G_CDS: 0.46 Total: -39.52 kcal Atomic # 8 Polarization: -8.61 SS G_CDS: 0.10 Total: -8.52 kcal Atomic # 9 Polarization: -2.67 SS G_CDS: 0.04 Total: -2.63 kcal Atomic # 14 Polarization: 18.12 SS G_CDS: -5.03 Total: 13.09 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -31.23 -6.81 -38.04 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241298407.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.430 kcal (2) G-P(sol) polarization free energy of solvation -31.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.044 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds