Wall clock time and date at job start Tue Mar 31 2020 06:24:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 O 1.21260 * 119.99731 * 2 1 4 4 C 1.47050 * 120.00025 * 180.02562 * 2 1 3 5 5 C 1.40124 * 120.06420 * 0.02562 * 4 2 1 6 6 C 1.37835 * 120.17391 * 180.02562 * 5 4 2 7 7 C 1.38474 * 120.31482 * 359.97438 * 6 5 4 8 8 F 1.35097 * 119.93767 * 180.02562 * 7 6 5 9 9 C 1.40132 * 120.12641 * 0.02562 * 7 6 5 10 10 C 1.47743 * 120.08985 * 179.97438 * 9 7 6 11 11 N 1.32878 * 120.24904 * 308.51363 * 10 9 7 12 12 C 1.32011 * 120.07829 * 179.97438 * 11 10 9 13 13 C 1.39194 * 120.58666 * 359.97438 * 12 11 10 14 14 N 1.31607 * 120.51275 * 0.02562 * 13 12 11 15 15 C 1.33970 * 119.89901 * 359.97438 * 14 13 12 16 16 C 1.40785 * 120.28345 * 180.02562 * 15 14 13 17 17 H 1.08003 * 119.99785 * 170.76321 * 16 15 14 18 18 C 1.40163 * 119.99980 * 350.76688 * 16 15 14 19 19 N 1.30691 * 120.00405 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99688 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47144 * 60.00199 * 20 18 16 22 22 H 1.48505 * 109.47129 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.47135 * 299.99991 * 20 18 16 24 24 C 1.39321 * 119.82136 * 0.25013 * 9 7 6 25 25 H 1.08998 * 109.47087 * 239.99372 * 1 2 3 26 26 H 1.08994 * 109.47083 * 0.02562 * 1 2 3 27 27 H 1.09001 * 109.46985 * 120.00024 * 1 2 3 28 28 H 1.07999 * 119.91075 * 359.97019 * 5 4 2 29 29 H 1.07996 * 119.84181 * 179.97438 * 6 5 4 30 30 H 1.07995 * 119.70781 * 179.97438 * 12 11 10 31 31 H 1.08004 * 119.73939 * 179.72386 * 13 12 11 32 32 H 0.96993 * 119.99852 * 180.02562 * 19 18 16 33 33 H 1.08009 * 120.15546 * 179.72700 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1133 1.0502 0.0000 4 6 2.2423 -1.2735 -0.0006 5 6 1.5431 -2.4878 -0.0017 6 6 2.2300 -3.6828 -0.0017 7 6 3.6147 -3.6930 -0.0011 8 9 4.2802 -4.8687 -0.0017 9 6 4.3270 -2.4862 0.0000 10 6 5.8044 -2.4981 0.0011 11 7 6.4673 -3.2187 0.8995 12 6 7.7874 -3.2272 0.8971 13 6 8.4988 -2.4859 -0.0420 14 7 7.8658 -1.7641 -0.9422 15 6 6.5264 -1.7409 -0.9580 16 6 5.8410 -0.9720 -1.9178 17 1 4.7707 -1.0705 -2.0245 18 6 6.5475 -0.0788 -2.7348 19 7 7.8426 0.0400 -2.6061 20 14 5.6381 0.9409 -4.0087 21 1 4.6299 1.7951 -3.3311 22 1 6.6056 1.7997 -4.7379 23 1 4.9559 0.0379 -4.9702 24 6 3.6382 -1.2752 0.0058 25 1 -0.3633 -0.5139 0.8899 26 1 -0.3633 1.0276 -0.0005 27 1 -0.3633 -0.5138 -0.8900 28 1 0.4631 -2.4873 -0.0016 29 1 1.6856 -4.6155 -0.0021 30 1 8.3201 -3.8146 1.6302 31 1 9.5786 -2.4993 -0.0286 32 1 8.3314 0.6584 -3.1713 33 1 4.1818 -0.3419 0.0111 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241298407.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:38 Heat of formation + Delta-G solvation = -40.715818 kcal Electronic energy + Delta-G solvation = -21812.945477 eV Core-core repulsion = 18331.072165 eV Total energy + Delta-G solvation = -3481.873311 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 286.086 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -49.84081 -41.20541 -40.57845 -38.83362 -36.09204 -34.50558 -33.40659 -32.28451 -31.03790 -29.82072 -28.07556 -25.33786 -24.35330 -23.94298 -22.91354 -20.61601 -19.66111 -18.67947 -18.09371 -17.65441 -17.36946 -16.85883 -16.46146 -16.43202 -15.89254 -15.87519 -15.65511 -15.02285 -14.92765 -14.52773 -14.00917 -13.88592 -13.64596 -13.39944 -13.26632 -13.07074 -12.97962 -12.86766 -12.54519 -12.13768 -11.99760 -11.75252 -11.59151 -11.13948 -10.76914 -10.22883 -9.84227 -9.57550 -9.28170 -8.52506 -6.74573 -0.42936 0.08092 0.62676 1.02512 1.30217 1.41964 1.42634 1.47034 2.09194 2.64300 2.71539 3.10390 3.30235 3.57237 3.66284 3.84549 4.05895 4.11079 4.22768 4.26582 4.40407 4.51783 4.66876 4.79594 4.80955 4.90951 4.97690 4.99948 5.12191 5.14176 5.23305 5.30443 5.48992 5.68953 5.86665 5.99130 6.35728 6.60352 6.62143 7.20202 7.78198 8.16484 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.011745 B = 0.008505 C = 0.005570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2383.438049 B = 3291.565494 C = 5025.324984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.394 3.606 3 O -0.511 6.511 4 C -0.197 4.197 5 C -0.027 4.027 6 C -0.156 4.156 7 C 0.113 3.887 8 F -0.144 7.144 9 C -0.052 4.052 10 C -0.054 4.054 11 N -0.423 5.423 12 C -0.119 4.119 13 C 0.080 3.920 14 N -0.486 5.486 15 C 0.192 3.808 16 C -0.421 4.421 17 H 0.096 0.904 18 C 0.025 3.975 19 N -0.739 5.739 20 Si 0.978 3.022 21 H -0.261 1.261 22 H -0.257 1.257 23 H -0.250 1.250 24 C -0.034 4.034 25 H 0.127 0.873 26 H 0.083 0.917 27 H 0.125 0.875 28 H 0.200 0.800 29 H 0.179 0.821 30 H 0.164 0.836 31 H 0.165 0.835 32 H 0.289 0.711 33 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.284 -2.481 1.100 15.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C 0.275 3.725 3 O -0.390 6.390 4 C -0.198 4.198 5 C -0.045 4.045 6 C -0.174 4.174 7 C 0.093 3.907 8 F -0.123 7.123 9 C -0.054 4.054 10 C -0.200 4.200 11 N -0.136 5.136 12 C -0.281 4.281 13 C -0.090 4.090 14 N -0.203 5.203 15 C 0.068 3.932 16 C -0.451 4.451 17 H 0.114 0.886 18 C -0.200 4.200 19 N -0.359 5.359 20 Si 0.797 3.203 21 H -0.185 1.185 22 H -0.181 1.181 23 H -0.173 1.173 24 C -0.053 4.053 25 H 0.145 0.855 26 H 0.102 0.898 27 H 0.143 0.857 28 H 0.217 0.783 29 H 0.196 0.804 30 H 0.181 0.819 31 H 0.182 0.818 32 H 0.100 0.900 33 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -14.711 -1.855 1.000 14.861 hybrid contribution 1.185 0.116 -0.287 1.225 sum -13.526 -1.739 0.713 13.656 Atomic orbital electron populations 1.22294 0.88548 1.06183 1.07337 1.23256 0.94096 0.86065 0.69048 1.90562 1.73791 1.35773 1.38847 1.20769 0.92678 0.97286 1.09106 1.21738 1.02285 0.88028 0.92442 1.21388 0.89647 1.02086 1.04282 1.18590 0.91549 0.79794 1.00771 1.91445 1.81947 1.45467 1.93419 1.18400 0.90855 0.92809 1.03376 1.20315 0.93099 1.06697 0.99901 1.67779 1.10134 1.14923 1.20721 1.23147 0.90237 1.09069 1.05643 1.24106 1.01684 0.91848 0.91399 1.69479 1.08411 1.19660 1.22783 1.19622 0.89381 0.91709 0.92512 1.19957 0.96054 1.16224 1.12860 0.88558 1.27087 0.95634 0.97809 0.99477 1.70081 1.08917 1.25866 1.31013 0.85294 0.79110 0.78334 0.77555 1.18539 1.18111 1.17333 1.21312 0.94338 0.96282 0.93409 0.85528 0.89781 0.85681 0.78273 0.80379 0.81863 0.81827 0.89966 0.87329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.45 8.92 71.24 0.64 -1.81 16 2 C 0.39 10.80 7.22 28.00 0.20 11.00 16 3 O -0.51 -19.50 17.06 -2.97 -0.05 -19.55 16 4 C -0.20 -5.93 5.86 -20.18 -0.12 -6.05 16 5 C -0.03 -0.56 9.46 22.63 0.21 -0.35 16 6 C -0.16 -3.92 9.99 22.23 0.22 -3.70 16 7 C 0.11 4.33 7.27 22.79 0.17 4.50 16 8 F -0.14 -6.05 16.52 44.97 0.74 -5.31 16 9 C -0.05 -2.36 5.04 -20.04 -0.10 -2.46 16 10 C -0.05 -2.89 6.07 42.42 0.26 -2.63 16 11 N -0.42 -22.03 10.04 -182.32 -1.83 -23.86 16 12 C -0.12 -5.68 11.22 84.90 0.95 -4.72 16 13 C 0.08 3.92 11.22 84.96 0.95 4.88 16 14 N -0.49 -27.61 8.10 -187.84 -1.52 -29.13 16 15 C 0.19 10.97 6.52 40.36 0.26 11.23 16 16 C -0.42 -22.89 7.81 23.36 0.18 -22.71 16 17 H 0.10 4.98 5.75 -2.91 -0.02 4.96 16 18 C 0.02 1.25 5.49 85.33 0.47 1.72 16 19 N -0.74 -39.25 11.53 21.86 0.25 -39.00 16 20 Si 0.98 38.22 29.56 68.60 2.03 40.25 16 21 H -0.26 -10.32 7.11 99.48 0.71 -9.61 16 22 H -0.26 -9.31 7.11 99.48 0.71 -8.60 16 23 H -0.25 -9.24 7.11 99.48 0.71 -8.54 16 24 C -0.03 -1.41 7.23 22.86 0.17 -1.24 16 25 H 0.13 0.87 8.08 -2.39 -0.02 0.85 16 26 H 0.08 1.15 8.12 -2.39 -0.02 1.13 16 27 H 0.13 0.92 8.08 -2.39 -0.02 0.90 16 28 H 0.20 1.58 7.02 -2.91 -0.02 1.56 16 29 H 0.18 2.98 8.06 -2.91 -0.02 2.96 16 30 H 0.16 6.40 8.06 -2.91 -0.02 6.38 16 31 H 0.16 6.65 8.06 -2.91 -0.02 6.63 16 32 H 0.29 13.75 8.29 -92.71 -0.77 12.98 16 33 H 0.11 5.26 7.02 -2.91 -0.02 5.24 16 Total: -1.00 -77.39 300.02 5.25 -72.14 By element: Atomic # 1 Polarization: 15.67 SS G_CDS: 1.17 Total: 16.83 kcal Atomic # 6 Polarization: -16.83 SS G_CDS: 4.46 Total: -12.37 kcal Atomic # 7 Polarization: -88.90 SS G_CDS: -3.10 Total: -92.00 kcal Atomic # 8 Polarization: -19.50 SS G_CDS: -0.05 Total: -19.55 kcal Atomic # 9 Polarization: -6.05 SS G_CDS: 0.74 Total: -5.31 kcal Atomic # 14 Polarization: 38.22 SS G_CDS: 2.03 Total: 40.25 kcal Total: -77.39 5.25 -72.14 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241298407.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.422 kcal (2) G-P(sol) polarization free energy of solvation -77.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds