Wall clock time and date at job start Tue Mar 31 2020 06:24:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 O 1.21267 * 119.99714 * 2 1 4 4 C 1.47044 * 119.99843 * 179.97438 * 2 1 3 5 5 C 1.40109 * 120.07134 * 0.02562 * 4 2 1 6 6 C 1.37859 * 120.16096 * 180.02562 * 5 4 2 7 7 C 1.38458 * 120.30896 * 0.02562 * 6 5 4 8 8 F 1.35098 * 119.93005 * 179.97438 * 7 6 5 9 9 C 1.40084 * 120.13948 * 359.97438 * 7 6 5 10 10 C 1.47901 * 120.08577 * 180.02562 * 9 7 6 11 11 C 1.40451 * 120.79015 * 310.00016 * 10 9 7 12 12 N 1.31584 * 119.08838 * 179.97438 * 11 10 9 13 13 C 1.33641 * 120.83214 * 0.02562 * 12 11 10 14 14 C 1.41071 * 119.13079 * 180.02562 * 13 12 11 15 15 H 1.07996 * 119.99986 * 359.97438 * 14 13 12 16 16 C 1.40136 * 120.00262 * 180.02562 * 14 13 12 17 17 N 1.30660 * 120.00035 * 359.97438 * 16 14 13 18 18 Si 1.86797 * 120.00132 * 179.97438 * 16 14 13 19 19 H 1.48494 * 109.47395 * 59.99673 * 18 16 14 20 20 H 1.48507 * 109.47368 * 179.97438 * 18 16 14 21 21 H 1.48499 * 109.47058 * 299.99488 * 18 16 14 22 22 N 1.33653 * 121.74402 * 359.97438 * 13 12 11 23 23 C 1.31579 * 120.82576 * 0.02562 * 22 13 12 24 24 C 1.39276 * 119.83154 * 0.27922 * 9 7 6 25 25 H 1.08998 * 109.47298 * 270.00169 * 1 2 3 26 26 H 1.09004 * 109.46603 * 30.00010 * 1 2 3 27 27 H 1.08998 * 109.46720 * 149.99752 * 1 2 3 28 28 H 1.07996 * 119.91870 * 359.97182 * 5 4 2 29 29 H 1.08000 * 119.83892 * 179.97438 * 6 5 4 30 30 H 1.07998 * 120.45325 * 0.25696 * 11 10 9 31 31 H 0.97000 * 120.00324 * 180.02562 * 17 16 14 32 32 H 1.08000 * 120.45606 * 180.02562 * 23 22 13 33 33 H 1.08001 * 120.14820 * 179.72791 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1134 1.0502 0.0000 4 6 2.2423 -1.2735 0.0006 5 6 1.5432 -2.4877 0.0006 6 6 2.2306 -3.6827 0.0016 7 6 3.6151 -3.6923 0.0032 8 9 4.2810 -4.8678 0.0048 9 6 4.3270 -2.4858 0.0033 10 6 5.8059 -2.4975 0.0044 11 6 6.5180 -3.2784 0.9296 12 7 7.8334 -3.2641 0.9003 13 6 8.4906 -2.5193 0.0062 14 6 9.9013 -2.5313 0.0066 15 1 10.4359 -3.1367 0.7235 16 6 10.6089 -1.7568 -0.9225 17 7 9.9621 -1.0239 -1.7895 18 14 12.4768 -1.7722 -0.9215 19 1 12.9606 -3.1549 -1.1646 20 1 12.9798 -0.8766 -1.9940 21 1 12.9750 -1.2976 0.3944 22 7 7.8467 -1.7641 -0.8890 23 6 6.5318 -1.7282 -0.9196 24 6 3.6384 -1.2752 0.0075 25 1 -0.3634 0.0000 1.0276 26 1 -0.3633 0.8900 -0.5139 27 1 -0.3633 -0.8900 -0.5139 28 1 0.4632 -2.4875 0.0006 29 1 1.6865 -4.6156 0.0021 30 1 5.9930 -3.8857 1.6520 31 1 10.4518 -0.4881 -2.4329 32 1 6.0176 -1.1161 -1.6458 33 1 4.1821 -0.3420 0.0120 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241300186.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:45 Heat of formation + Delta-G solvation = -17.078337 kcal Electronic energy + Delta-G solvation = -20971.145219 eV Core-core repulsion = 17490.296906 eV Total energy + Delta-G solvation = -3480.848313 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 286.086 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -48.58136 -39.87655 -38.96927 -37.69980 -34.11811 -32.61118 -31.89044 -31.16890 -29.92207 -28.72482 -26.18600 -23.67129 -23.05504 -22.53831 -21.35413 -19.48019 -18.02623 -17.50004 -16.48510 -16.42988 -15.92397 -15.43367 -15.02409 -14.91286 -14.68762 -14.59908 -14.44551 -13.58800 -13.11476 -12.88334 -12.78395 -12.72068 -12.41471 -12.40109 -12.21811 -11.83083 -11.43701 -11.35204 -11.03566 -10.85068 -10.44039 -9.85101 -9.67297 -9.29881 -9.26238 -9.05828 -8.67651 -7.78750 -7.39469 -6.70078 -4.88389 0.64394 1.30896 2.24138 2.57381 2.89666 2.96995 2.99915 3.04091 3.76062 3.80775 4.01341 4.40397 4.50389 4.76698 4.93637 4.98078 5.20781 5.28022 5.33573 5.46329 5.68370 5.71093 5.79264 5.80559 6.01551 6.03419 6.20970 6.24017 6.35674 6.47379 6.77278 6.90290 7.00159 7.15501 7.48690 7.51211 7.98883 8.32345 8.39943 8.95491 9.94189 10.11916 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.025044 B = 0.004007 C = 0.003565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1117.746806 B = 6985.915667 C = 7853.225120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.396 3.604 3 O -0.459 6.459 4 C -0.183 4.183 5 C -0.074 4.074 6 C -0.163 4.163 7 C 0.116 3.884 8 F -0.131 7.131 9 C -0.012 4.012 10 C -0.344 4.344 11 C 0.198 3.802 12 N -0.592 5.592 13 C 0.382 3.618 14 C -0.377 4.377 15 H 0.097 0.903 16 C 0.060 3.940 17 N -0.696 5.696 18 Si 0.924 3.076 19 H -0.261 1.261 20 H -0.274 1.274 21 H -0.261 1.261 22 N -0.507 5.507 23 C 0.188 3.812 24 C -0.041 4.041 25 H 0.096 0.904 26 H 0.085 0.915 27 H 0.086 0.914 28 H 0.135 0.865 29 H 0.135 0.865 30 H 0.129 0.871 31 H 0.280 0.720 32 H 0.130 0.870 33 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.715 -1.065 0.873 14.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.256 4.256 2 C 0.274 3.726 3 O -0.335 6.335 4 C -0.184 4.184 5 C -0.093 4.093 6 C -0.182 4.182 7 C 0.096 3.904 8 F -0.109 7.109 9 C -0.015 4.015 10 C -0.355 4.355 11 C 0.023 3.977 12 N -0.310 5.310 13 C 0.149 3.851 14 C -0.410 4.410 15 H 0.115 0.885 16 C -0.168 4.168 17 N -0.316 5.316 18 Si 0.746 3.254 19 H -0.185 1.185 20 H -0.199 1.199 21 H -0.185 1.185 22 N -0.223 5.223 23 C 0.011 3.989 24 C -0.060 4.060 25 H 0.114 0.886 26 H 0.104 0.896 27 H 0.105 0.895 28 H 0.153 0.847 29 H 0.153 0.847 30 H 0.146 0.854 31 H 0.092 0.908 32 H 0.148 0.852 33 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -13.113 -0.396 0.666 13.136 hybrid contribution -0.312 -0.359 -0.073 0.482 sum -13.425 -0.755 0.592 13.459 Atomic orbital electron populations 1.22231 0.94027 1.04749 1.04615 1.22432 0.91487 0.87676 0.70960 1.90558 1.72138 1.34331 1.36507 1.20412 0.94421 0.94659 1.08953 1.21110 0.99645 0.90537 0.97965 1.20927 0.92098 0.99490 1.05671 1.18246 0.89765 0.81270 1.01139 1.91503 1.81056 1.45065 1.93294 1.18736 0.93698 0.90592 0.98458 1.19511 0.90411 1.15617 1.09951 1.22580 0.90579 0.91433 0.93092 1.68657 1.08048 1.26389 1.27941 1.19952 0.94607 0.85858 0.84657 1.19473 0.88693 1.20288 1.12579 0.88533 1.26232 1.01994 0.94183 0.94423 1.70106 1.37886 1.14130 1.09512 0.86110 0.80400 0.79579 0.79267 1.18524 1.19875 1.18505 1.69364 1.06270 1.22200 1.24437 1.23002 0.91317 0.91643 0.92916 1.21523 0.92322 0.97966 0.94154 0.88582 0.89587 0.89533 0.84731 0.84710 0.85401 0.90831 0.85220 0.84293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.50 9.75 36.01 0.35 -1.15 16 2 C 0.40 4.94 7.22 -30.74 -0.22 4.72 16 3 O -0.46 -7.53 17.08 5.57 0.10 -7.43 16 4 C -0.18 -2.45 5.87 -105.11 -0.62 -3.06 16 5 C -0.07 -0.80 9.36 -39.02 -0.37 -1.16 16 6 C -0.16 -2.00 9.99 -39.64 -0.40 -2.39 16 7 C 0.12 1.87 7.20 -38.81 -0.28 1.59 16 8 F -0.13 -2.32 15.95 2.25 0.04 -2.28 16 9 C -0.01 -0.22 5.52 -104.86 -0.58 -0.80 16 10 C -0.34 -7.60 5.35 -104.28 -0.56 -8.15 16 11 C 0.20 4.63 10.19 -16.82 -0.17 4.46 16 12 N -0.59 -15.72 10.34 -12.41 -0.13 -15.84 16 13 C 0.38 10.67 7.35 -158.17 -1.16 9.50 16 14 C -0.38 -10.11 9.35 -37.80 -0.35 -10.46 16 15 H 0.10 2.46 7.85 -52.49 -0.41 2.05 16 16 C 0.06 1.49 5.50 -17.34 -0.10 1.39 16 17 N -0.70 -17.81 11.40 55.56 0.63 -17.18 16 18 Si 0.92 17.89 29.56 -169.99 -5.02 12.87 16 19 H -0.26 -4.99 7.11 56.52 0.40 -4.59 16 20 H -0.27 -5.11 7.11 56.52 0.40 -4.71 16 21 H -0.26 -4.99 7.11 56.52 0.40 -4.59 16 22 N -0.51 -13.87 7.83 -12.41 -0.10 -13.97 16 23 C 0.19 4.50 10.85 -16.83 -0.18 4.32 16 24 C -0.04 -0.67 9.10 -38.68 -0.35 -1.03 16 25 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.09 0.46 6.46 -51.93 -0.34 0.13 16 28 H 0.13 0.92 6.34 -52.49 -0.33 0.58 16 29 H 0.14 1.28 8.06 -52.49 -0.42 0.86 16 30 H 0.13 2.63 7.85 -52.49 -0.41 2.22 16 31 H 0.28 6.42 8.29 -40.82 -0.34 6.08 16 32 H 0.13 2.77 8.06 -52.49 -0.42 2.34 16 33 H 0.14 2.44 7.64 -52.49 -0.40 2.03 16 LS Contribution 302.88 15.07 4.56 4.56 Total: -1.00 -31.10 302.88 -7.62 -38.72 By element: Atomic # 1 Polarization: 5.48 SS G_CDS: -2.72 Total: 2.76 kcal Atomic # 6 Polarization: 2.76 SS G_CDS: -4.98 Total: -2.22 kcal Atomic # 7 Polarization: -47.40 SS G_CDS: 0.41 Total: -46.99 kcal Atomic # 8 Polarization: -7.53 SS G_CDS: 0.10 Total: -7.43 kcal Atomic # 9 Polarization: -2.32 SS G_CDS: 0.04 Total: -2.28 kcal Atomic # 14 Polarization: 17.89 SS G_CDS: -5.02 Total: 12.87 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -31.10 -7.62 -38.72 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241300186.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.646 kcal (2) G-P(sol) polarization free energy of solvation -31.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds